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Changeset 11558 for NEMO/trunk/doc/latex/NEMO/subfiles/chap_DIA.tex – NEMO

Ignore:
Timestamp:
2019-09-17T17:04:06+02:00 (5 years ago)
Author:
nicolasmartin
Message:

Review all figure envs + activation of listoflistings

  1. Figure env:
    • Replace center sub-env with only \centering cmd
    • Add alternate caption for \listoffigures (shorter one between square brackets, i.e. \caption[]{})
    • Place \label outside of \caption and remove useless \protect
  1. Namelist listings
    • Put \nlst with the namelist inlcusion in a listing float env with caption and label
    • Remove namelist duplicates

-- This line, and those below, will be ignored--
M subfiles/apdx_triads.tex
M subfiles/chap_model_basics_zstar.tex
M subfiles/chap_SBC.tex
M subfiles/apdx_DOMAINcfg.tex
M subfiles/apdx_s_coord.tex
M subfiles/chap_DOM.tex
M subfiles/chap_ASM.tex
M subfiles/chap_DIU.tex
M subfiles/chap_cfgs.tex
M subfiles/chap_ZDF.tex
M subfiles/chap_OBS.tex
M subfiles/chap_model_basics.tex
M subfiles/chap_time_domain.tex
M subfiles/apdx_algos.tex
M subfiles/chap_TRA.tex
M subfiles/chap_DYN.tex
M subfiles/chap_misc.tex
M subfiles/chap_DIA.tex
M subfiles/apdx_invariants.tex
M subfiles/chap_LBC.tex
M subfiles/apdx_diff_opers.tex
M subfiles/chap_STO.tex
M subfiles/chap_LDF.tex

File:
1 edited

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  • NEMO/trunk/doc/latex/NEMO/subfiles/chap_DIA.tex

    r11543 r11558  
    174174\xmlline|<variable id="using_server" type="bool"></variable>| 
    175175 
    176 The {\ttfamily using\_server} setting determines whether or not the server will be used in \textit{attached mode} 
    177 (as a library) [{\ttfamily> false <}] or in \textit{detached mode} 
    178 (as an external executable on N additional, dedicated cpus) [{\ttfamily > true <}]. 
    179 The \textit{attached mode} is simpler to use but much less efficient for massively parallel applications. 
     176The \texttt{using\_server} setting determines whether or not the server will be used in 
     177\textit{attached mode} 
     178(as a library) [\texttt{> false <}] or in \textit{detached mode} 
     179(as an external executable on N additional, dedicated cpus) [\texttt{ > true <}]. 
     180The \textit{attached mode} is simpler to use but much less efficient for 
     181massively parallel applications. 
    180182The type of each file can be either ''multiple\_file'' or ''one\_file''. 
    181183 
    … …  
    218220 
    219221\begin{table} 
    220   \scriptsize 
    221222  \begin{tabularx}{\textwidth}{|lXl|} 
    222223    \hline 
    … …  
    341342 
    342343\begin{table} 
    343   \scriptsize 
    344344  \begin{tabular*}{\textwidth}{|p{0.15\textwidth}p{0.4\textwidth}p{0.35\textwidth}|} 
    345345    \hline 
    … …  
    373373 
    374374\begin{table} 
    375   \scriptsize 
    376375  \begin{tabular}{|p{0.15\textwidth}p{0.4\textwidth}p{0.35\textwidth}|} 
    377376    \hline 
    … …  
    398397 
    399398\begin{table} 
    400   \scriptsize 
    401399  \begin{tabular}{|p{0.15\textwidth}p{0.4\textwidth}p{0.35\textwidth}|} 
    402400    \hline 
    … …  
    418416 
    419417\begin{table} 
    420   \scriptsize 
    421418  \begin{tabular}{|p{0.15\textwidth}p{0.4\textwidth}p{0.35\textwidth}|} 
    422419    \hline 
    … …  
    634631 
    635632\begin{table} 
    636   \scriptsize 
    637633  \begin{tabularx}{\textwidth}{|lX|} 
    638634    \hline 
    … …  
    695691 
    696692\begin{table} 
    697   \scriptsize 
    698693  \begin{tabular}{|l|c|c|} 
    699694    \hline 
    … …  
    894889 
    895890\begin{table} 
    896   \scriptsize 
    897891  \begin{tabularx}{\textwidth}{|l|X|X|l|X|} 
    898892    \hline 
    … …  
    917911    \hline 
    918912  \end{tabularx} 
    919   \caption{Context tags} 
     913  \caption{XIOS: context tags} 
    920914\end{table} 
    921915 
    922916\begin{table} 
    923   \scriptsize 
    924917  \begin{tabularx}{\textwidth}{|l|X|X|X|l|} 
    925918    \hline 
    … …  
    952945    \hline 
    953946  \end{tabularx} 
    954   \caption{Field tags ("\ttfamily{field\_*}")} 
     947  \caption{XIOS: field tags ("\texttt{field\_*}")} 
    955948\end{table} 
    956949 
    957950\begin{table} 
    958   \scriptsize 
    959951  \begin{tabularx}{\textwidth}{|l|X|X|X|l|} 
    960952    \hline 
    … …  
    988980    \hline 
    989981  \end{tabularx} 
    990   \caption{File tags ("\ttfamily{file\_*}")} 
     982  \caption{XIOS: file tags ("\texttt{file\_*}")} 
    991983\end{table} 
    992984 
    993985\begin{table} 
    994   \scriptsize 
    995986  \begin{tabularx}{\textwidth}{|l|X|X|X|X|} 
    996987    \hline 
    … …  
    10211012    \hline 
    10221013  \end{tabularx} 
    1023   \caption{Axis tags ("\ttfamily{axis\_*}")} 
     1014  \caption{XIOS: axis tags ("\texttt{axis\_*}")} 
    10241015\end{table} 
    10251016 
    10261017\begin{table} 
    1027   \scriptsize 
    10281018  \begin{tabularx}{\textwidth}{|l|X|X|X|X|} 
    10291019    \hline 
    … …  
    10541044    \hline 
    10551045  \end{tabularx} 
    1056   \caption{Domain tags ("\ttfamily{domain\_*)}"} 
     1046  \caption{XIOS: domain tags ("\texttt{domain\_*)}"} 
    10571047\end{table} 
    10581048 
    10591049\begin{table} 
    1060   \scriptsize 
    10611050  \begin{tabularx}{\textwidth}{|l|X|X|X|X|} 
    10621051    \hline 
    … …  
    10871076    \hline 
    10881077  \end{tabularx} 
    1089   \caption{Grid tags ("\ttfamily{grid\_*}")} 
     1078  \caption{XIOS: grid tags ("\texttt{grid\_*}")} 
    10901079\end{table} 
    10911080 
    … …  
    10931082 
    10941083\begin{table} 
    1095   \scriptsize 
    10961084  \begin{tabularx}{\textwidth}{|l|X|l|l|} 
    10971085    \hline 
    … …  
    11281116    \hline 
    11291117  \end{tabularx} 
    1130   \caption{Reference attributes ("\ttfamily{*\_ref}")} 
     1118  \caption{XIOS: reference attributes ("\texttt{*\_ref}")} 
    11311119\end{table} 
    11321120 
    11331121\begin{table} 
    1134   \scriptsize 
    11351122  \begin{tabularx}{\textwidth}{|l|X|l|l|} 
    11361123    \hline 
    … …  
    11641151    \hline 
    11651152  \end{tabularx} 
    1166   \caption{Domain attributes ("\ttfamily{zoom\_*}")} 
     1153  \caption{XIOS: domain attributes ("\texttt{zoom\_*}")} 
    11671154\end{table} 
    11681155 
    11691156\begin{table} 
    1170   \scriptsize 
    11711157  \begin{tabularx}{\textwidth}{|l|X|l|l|} 
    11721158    \hline 
    … …  
    12191205    \hline 
    12201206  \end{tabularx} 
    1221   \caption{File attributes} 
     1207  \caption{XIOS: file attributes} 
    12221208\end{table} 
    12231209 
    12241210\begin{table} 
    1225   \scriptsize 
    12261211  \begin{tabularx}{\textwidth}{|l|X|l|l|} 
    12271212    \hline 
    … …  
    12681253    \hline 
    12691254  \end{tabularx} 
    1270   \caption{Field attributes} 
     1255  \caption{XIOS: field attributes} 
    12711256\end{table} 
    12721257 
    12731258\begin{table} 
    1274   \scriptsize 
    12751259  \begin{tabularx}{\textwidth}{|l|X|X|X|} 
    12761260    \hline 
    … …  
    13271311    \hline 
    13281312  \end{tabularx} 
    1329   \caption{Miscellaneous attributes} 
     1313  \caption{XIOS: miscellaneous attributes} 
    13301314\end{table} 
    13311315 
    … …  
    13661350%------------------------------------------namnc4---------------------------------------------------- 
    13671351 
    1368 \nlst{namnc4} 
     1352\begin{listing} 
     1353  \nlst{namnc4} 
     1354  \caption{\texttt{namnc4}} 
     1355  \label{lst:namnc4} 
     1356\end{listing} 
    13691357%------------------------------------------------------------------------------------------------------------- 
    13701358 
    … …  
    14041392\end{forlines} 
    14051393 
    1406 \noindent for a standard ORCA2\_LIM configuration gives chunksizes of {\small\ttfamily 46x38x1} respectively in 
    1407 the mono-processor case (\ie\ global domain of {\small\ttfamily 182x149x31}). 
     1394\noindent for a standard ORCA2\_LIM configuration gives chunksizes of {\small\texttt 46x38x1} respectively in 
     1395the mono-processor case (\ie\ global domain of {\small\texttt 182x149x31}). 
    14081396An illustration of the potential space savings that NetCDF4 chunking and compression provides is given in 
    14091397table \autoref{tab:DIA_NC4} which compares the results of two short runs of the ORCA2\_LIM reference configuration with 
    … …  
    14141402%------------------------------------------TABLE---------------------------------------------------- 
    14151403\begin{table} 
    1416   \scriptsize 
    14171404  \centering 
    14181405  \begin{tabular}{lrrr} 
    … …  
    14461433    ORCA2\_2d\_grid\_W\_0007.nc & 4416    & 1368     & 70\%      \\ 
    14471434  \end{tabular} 
    1448   \caption{ 
    1449     \protect\label{tab:DIA_NC4} 
    1450     Filesize comparison between NetCDF3 and NetCDF4 with chunking and compression 
    1451   } 
     1435  \caption{Filesize comparison between NetCDF3 and NetCDF4 with chunking and compression} 
     1436  \label{tab:DIA_NC4} 
    14521437\end{table} 
    14531438%---------------------------------------------------------------------------------------------------- 
    … …  
    14711456%------------------------------------------namtrd---------------------------------------------------- 
    14721457 
    1473 \nlst{namtrd} 
     1458\begin{listing} 
     1459  \nlst{namtrd} 
     1460  \caption{\texttt{namtrd}} 
     1461  \label{lst:namtrd} 
     1462\end{listing} 
    14741463%------------------------------------------------------------------------------------------------------------- 
    14751464 
    … …  
    15181507%--------------------------------------------namflo------------------------------------------------------- 
    15191508 
    1520 \nlst{namflo} 
     1509\begin{listing} 
     1510  \nlst{namflo} 
     1511  \caption{\texttt{namflo}} 
     1512  \label{lst:namflo} 
     1513\end{listing} 
    15211514%-------------------------------------------------------------------------------------------------------------- 
    15221515 
    … …  
    15361529In case of Ariane convention, input filename is \textit{init\_float\_ariane}. 
    15371530Its format is: \\ 
    1538 {\scriptsize \texttt{I J K nisobfl itrash}} 
     1531{ \texttt{I J K nisobfl itrash}} 
    15391532 
    15401533\noindent with: 
    … …  
    15481541\noindent Example: \\ 
    15491542\noindent 
    1550 {\scriptsize 
     1543{ 
    15511544  \texttt{ 
    15521545    100.00000  90.00000  -1.50000 1.00000   0.00000   \\ 
    … …  
    15591552In the other case (longitude and latitude), input filename is init\_float. 
    15601553Its format is: \\ 
    1561 {\scriptsize \texttt{Long Lat depth nisobfl ngrpfl itrash}} 
     1554{ \texttt{Long Lat depth nisobfl ngrpfl itrash}} 
    15621555 
    15631556\noindent with: 
    … …  
    15731566\noindent Example: \\ 
    15741567\noindent 
    1575 {\scriptsize 
     1568{ 
    15761569  \texttt{ 
    15771570    20.0 0.0 0.0 0 1 1    \\ 
    … …  
    16221615%------------------------------------------nam_diaharm---------------------------------------------------- 
    16231616% 
    1624 \nlst{nam_diaharm} 
     1617\begin{listing} 
     1618  \nlst{nam_diaharm} 
     1619  \caption{\texttt{nam\_diaharm}} 
     1620  \label{lst:nam_diaharm} 
     1621\end{listing} 
    16251622%---------------------------------------------------------------------------------------------------------- 
    16261623 
    … …  
    16701667%------------------------------------------nam_diadct---------------------------------------------------- 
    16711668 
    1672 \nlst{nam_diadct} 
     1669\begin{listing} 
     1670  \nlst{nam_diadct} 
     1671  \caption{\texttt{nam\_diadct}} 
     1672  \label{lst:nam_diadct} 
     1673\end{listing} 
    16731674%------------------------------------------------------------------------------------------------------------- 
    16741675 
    … …  
    17041705 
    17051706Each section is defined by: \\ 
    1706 \noindent {\scriptsize \texttt{long1 lat1 long2 lat2 nclass (ok/no)strpond (no)ice section\_name}} \\ 
     1707\noindent { \texttt{long1 lat1 long2 lat2 nclass (ok/no)strpond (no)ice section\_name}} \\ 
    17071708with: 
    17081709 
    … …  
    17211722 
    17221723\noindent If nclass $\neq$ 0, the next lines contain the class type and the nclass bounds: \\ 
    1723 {\scriptsize 
     1724{ 
    17241725  \texttt{ 
    17251726    long1 lat1 long2 lat2 nclass (ok/no)strpond (no)ice section\_name \\ 
    … …  
    17541755 and the ATL\_Cuba\_Florida with 4 temperature clases (5 class bounds), are shown: \\ 
    17551756 \noindent 
    1756  {\scriptsize 
     1757 { 
    17571758   \texttt{ 
    17581759     -68.    -54.5   -60.    -64.7  00 okstrpond noice ACC\_Drake\_Passage \\ 
    … …  
    17691770 
    17701771The output format is: \\ 
    1771 {\scriptsize 
     1772{ 
    17721773  \texttt{ 
    17731774    date, time-step number, section number,                \\ 
    … …  
    17911792 
    17921793\begin{table} 
    1793   \scriptsize 
    17941794  \begin{tabular}{|l|l|l|l|l|} 
    17951795    \hline 
    … …  
    20112011%>>>>>>>>>>>>>>>>>>>>>>>>>>>> 
    20122012\begin{figure}[!t] 
    2013   \begin{center} 
    2014     \includegraphics[width=\textwidth]{Fig_mask_subasins} 
    2015     \caption{ 
    2016       \protect\label{fig:DIA_mask_subasins} 
    2017       Decomposition of the World Ocean (here ORCA2) into sub-basin used in to 
    2018       compute the heat and salt transports as well as the meridional stream-function: 
    2019       Atlantic basin (red), Pacific basin (green), Indian basin (bleue), Indo-Pacific basin (bleue+green). 
    2020       Note that semi-enclosed seas (Red, Med and Baltic seas) as well as Hudson Bay are removed from the sub-basins. 
    2021       Note also that the Arctic Ocean has been split into Atlantic and Pacific basins along the North fold line. 
    2022     } 
    2023   \end{center} 
     2013  \centering 
     2014  \includegraphics[width=\textwidth]{Fig_mask_subasins} 
     2015  \caption[Decomposition of the World Ocean to compute transports as well as 
     2016  the meridional stream-function]{ 
     2017    Decomposition of the World Ocean (here ORCA2) into sub-basin used in to 
     2018    compute the heat and salt transports as well as the meridional stream-function: 
     2019    Atlantic basin (red), Pacific basin (green), 
     2020    Indian basin (blue), Indo-Pacific basin (blue+green). 
     2021    Note that semi-enclosed seas (Red, Med and Baltic seas) as well as 
     2022    Hudson Bay are removed from the sub-basins. 
     2023    Note also that the Arctic Ocean has been split into Atlantic and 
     2024    Pacific basins along the North fold line. 
     2025  } 
     2026  \label{fig:DIA_mask_subasins} 
    20242027\end{figure} 
    20252028%>>>>>>>>>>>>>>>>>>>>>>>>>>>> 
    … …  
    20492052%------------------------------------------namptr----------------------------------------- 
    20502053 
    2051 \nlst{namptr} 
     2054\begin{listing} 
     2055  \nlst{namptr} 
     2056  \caption{\texttt{namptr}} 
     2057  \label{lst:namptr} 
     2058\end{listing} 
    20522059%----------------------------------------------------------------------------------------- 
    20532060 
    … …  
    20592066%------------------------------------------nam_dia25h------------------------------------- 
    20602067 
    2061 \nlst{nam_dia25h} 
     2068\begin{listing} 
     2069  \nlst{nam_dia25h} 
     2070  \caption{\texttt{nam\_dia25h}} 
     2071  \label{lst:nam_dia25h} 
     2072\end{listing} 
    20622073%----------------------------------------------------------------------------------------- 
    20632074 
    … …  
    20742085%------------------------------------------nam_diatmb----------------------------------------------------- 
    20752086 
    2076 \nlst{nam_diatmb} 
     2087\begin{listing} 
     2088  \nlst{nam_diatmb} 
     2089  \caption{\texttt{nam\_diatmb}} 
     2090  \label{lst:nam_diatmb} 
     2091\end{listing} 
    20772092%---------------------------------------------------------------------------------------------------------- 
    20782093 
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