Changeset 11558 for NEMO/trunk/doc/latex/NEMO/subfiles/chap_DIA.tex
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- 2019-09-17T17:04:06+02:00 (5 years ago)
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NEMO/trunk/doc/latex/NEMO/subfiles/chap_DIA.tex
r11543 r11558 174 174 \xmlline|<variable id="using_server" type="bool"></variable>| 175 175 176 The {\ttfamily using\_server} setting determines whether or not the server will be used in \textit{attached mode} 177 (as a library) [{\ttfamily> false <}] or in \textit{detached mode} 178 (as an external executable on N additional, dedicated cpus) [{\ttfamily > true <}]. 179 The \textit{attached mode} is simpler to use but much less efficient for massively parallel applications. 176 The \texttt{using\_server} setting determines whether or not the server will be used in 177 \textit{attached mode} 178 (as a library) [\texttt{> false <}] or in \textit{detached mode} 179 (as an external executable on N additional, dedicated cpus) [\texttt{ > true <}]. 180 The \textit{attached mode} is simpler to use but much less efficient for 181 massively parallel applications. 180 182 The type of each file can be either ''multiple\_file'' or ''one\_file''. 181 183 … … 218 220 219 221 \begin{table} 220 \scriptsize221 222 \begin{tabularx}{\textwidth}{|lXl|} 222 223 \hline … … 341 342 342 343 \begin{table} 343 \scriptsize344 344 \begin{tabular*}{\textwidth}{|p{0.15\textwidth}p{0.4\textwidth}p{0.35\textwidth}|} 345 345 \hline … … 373 373 374 374 \begin{table} 375 \scriptsize376 375 \begin{tabular}{|p{0.15\textwidth}p{0.4\textwidth}p{0.35\textwidth}|} 377 376 \hline … … 398 397 399 398 \begin{table} 400 \scriptsize401 399 \begin{tabular}{|p{0.15\textwidth}p{0.4\textwidth}p{0.35\textwidth}|} 402 400 \hline … … 418 416 419 417 \begin{table} 420 \scriptsize421 418 \begin{tabular}{|p{0.15\textwidth}p{0.4\textwidth}p{0.35\textwidth}|} 422 419 \hline … … 634 631 635 632 \begin{table} 636 \scriptsize637 633 \begin{tabularx}{\textwidth}{|lX|} 638 634 \hline … … 695 691 696 692 \begin{table} 697 \scriptsize698 693 \begin{tabular}{|l|c|c|} 699 694 \hline … … 894 889 895 890 \begin{table} 896 \scriptsize897 891 \begin{tabularx}{\textwidth}{|l|X|X|l|X|} 898 892 \hline … … 917 911 \hline 918 912 \end{tabularx} 919 \caption{ Context tags}913 \caption{XIOS: context tags} 920 914 \end{table} 921 915 922 916 \begin{table} 923 \scriptsize924 917 \begin{tabularx}{\textwidth}{|l|X|X|X|l|} 925 918 \hline … … 952 945 \hline 953 946 \end{tabularx} 954 \caption{ Field tags ("\ttfamily{field\_*}")}947 \caption{XIOS: field tags ("\texttt{field\_*}")} 955 948 \end{table} 956 949 957 950 \begin{table} 958 \scriptsize959 951 \begin{tabularx}{\textwidth}{|l|X|X|X|l|} 960 952 \hline … … 988 980 \hline 989 981 \end{tabularx} 990 \caption{ File tags ("\ttfamily{file\_*}")}982 \caption{XIOS: file tags ("\texttt{file\_*}")} 991 983 \end{table} 992 984 993 985 \begin{table} 994 \scriptsize995 986 \begin{tabularx}{\textwidth}{|l|X|X|X|X|} 996 987 \hline … … 1021 1012 \hline 1022 1013 \end{tabularx} 1023 \caption{ Axis tags ("\ttfamily{axis\_*}")}1014 \caption{XIOS: axis tags ("\texttt{axis\_*}")} 1024 1015 \end{table} 1025 1016 1026 1017 \begin{table} 1027 \scriptsize1028 1018 \begin{tabularx}{\textwidth}{|l|X|X|X|X|} 1029 1019 \hline … … 1054 1044 \hline 1055 1045 \end{tabularx} 1056 \caption{ Domain tags ("\ttfamily{domain\_*)}"}1046 \caption{XIOS: domain tags ("\texttt{domain\_*)}"} 1057 1047 \end{table} 1058 1048 1059 1049 \begin{table} 1060 \scriptsize1061 1050 \begin{tabularx}{\textwidth}{|l|X|X|X|X|} 1062 1051 \hline … … 1087 1076 \hline 1088 1077 \end{tabularx} 1089 \caption{ Grid tags ("\ttfamily{grid\_*}")}1078 \caption{XIOS: grid tags ("\texttt{grid\_*}")} 1090 1079 \end{table} 1091 1080 … … 1093 1082 1094 1083 \begin{table} 1095 \scriptsize1096 1084 \begin{tabularx}{\textwidth}{|l|X|l|l|} 1097 1085 \hline … … 1128 1116 \hline 1129 1117 \end{tabularx} 1130 \caption{ Reference attributes ("\ttfamily{*\_ref}")}1118 \caption{XIOS: reference attributes ("\texttt{*\_ref}")} 1131 1119 \end{table} 1132 1120 1133 1121 \begin{table} 1134 \scriptsize1135 1122 \begin{tabularx}{\textwidth}{|l|X|l|l|} 1136 1123 \hline … … 1164 1151 \hline 1165 1152 \end{tabularx} 1166 \caption{ Domain attributes ("\ttfamily{zoom\_*}")}1153 \caption{XIOS: domain attributes ("\texttt{zoom\_*}")} 1167 1154 \end{table} 1168 1155 1169 1156 \begin{table} 1170 \scriptsize1171 1157 \begin{tabularx}{\textwidth}{|l|X|l|l|} 1172 1158 \hline … … 1219 1205 \hline 1220 1206 \end{tabularx} 1221 \caption{ File attributes}1207 \caption{XIOS: file attributes} 1222 1208 \end{table} 1223 1209 1224 1210 \begin{table} 1225 \scriptsize1226 1211 \begin{tabularx}{\textwidth}{|l|X|l|l|} 1227 1212 \hline … … 1268 1253 \hline 1269 1254 \end{tabularx} 1270 \caption{ Field attributes}1255 \caption{XIOS: field attributes} 1271 1256 \end{table} 1272 1257 1273 1258 \begin{table} 1274 \scriptsize1275 1259 \begin{tabularx}{\textwidth}{|l|X|X|X|} 1276 1260 \hline … … 1327 1311 \hline 1328 1312 \end{tabularx} 1329 \caption{ Miscellaneous attributes}1313 \caption{XIOS: miscellaneous attributes} 1330 1314 \end{table} 1331 1315 … … 1366 1350 %------------------------------------------namnc4---------------------------------------------------- 1367 1351 1368 \nlst{namnc4} 1352 \begin{listing} 1353 \nlst{namnc4} 1354 \caption{\texttt{namnc4}} 1355 \label{lst:namnc4} 1356 \end{listing} 1369 1357 %------------------------------------------------------------------------------------------------------------- 1370 1358 … … 1404 1392 \end{forlines} 1405 1393 1406 \noindent for a standard ORCA2\_LIM configuration gives chunksizes of {\small\t tfamily46x38x1} respectively in1407 the mono-processor case (\ie\ global domain of {\small\t tfamily182x149x31}).1394 \noindent for a standard ORCA2\_LIM configuration gives chunksizes of {\small\texttt 46x38x1} respectively in 1395 the mono-processor case (\ie\ global domain of {\small\texttt 182x149x31}). 1408 1396 An illustration of the potential space savings that NetCDF4 chunking and compression provides is given in 1409 1397 table \autoref{tab:DIA_NC4} which compares the results of two short runs of the ORCA2\_LIM reference configuration with … … 1414 1402 %------------------------------------------TABLE---------------------------------------------------- 1415 1403 \begin{table} 1416 \scriptsize1417 1404 \centering 1418 1405 \begin{tabular}{lrrr} … … 1446 1433 ORCA2\_2d\_grid\_W\_0007.nc & 4416 & 1368 & 70\% \\ 1447 1434 \end{tabular} 1448 \caption{ 1449 \protect\label{tab:DIA_NC4} 1450 Filesize comparison between NetCDF3 and NetCDF4 with chunking and compression 1451 } 1435 \caption{Filesize comparison between NetCDF3 and NetCDF4 with chunking and compression} 1436 \label{tab:DIA_NC4} 1452 1437 \end{table} 1453 1438 %---------------------------------------------------------------------------------------------------- … … 1471 1456 %------------------------------------------namtrd---------------------------------------------------- 1472 1457 1473 \nlst{namtrd} 1458 \begin{listing} 1459 \nlst{namtrd} 1460 \caption{\texttt{namtrd}} 1461 \label{lst:namtrd} 1462 \end{listing} 1474 1463 %------------------------------------------------------------------------------------------------------------- 1475 1464 … … 1518 1507 %--------------------------------------------namflo------------------------------------------------------- 1519 1508 1520 \nlst{namflo} 1509 \begin{listing} 1510 \nlst{namflo} 1511 \caption{\texttt{namflo}} 1512 \label{lst:namflo} 1513 \end{listing} 1521 1514 %-------------------------------------------------------------------------------------------------------------- 1522 1515 … … 1536 1529 In case of Ariane convention, input filename is \textit{init\_float\_ariane}. 1537 1530 Its format is: \\ 1538 { \scriptsize\texttt{I J K nisobfl itrash}}1531 { \texttt{I J K nisobfl itrash}} 1539 1532 1540 1533 \noindent with: … … 1548 1541 \noindent Example: \\ 1549 1542 \noindent 1550 { \scriptsize1543 { 1551 1544 \texttt{ 1552 1545 100.00000 90.00000 -1.50000 1.00000 0.00000 \\ … … 1559 1552 In the other case (longitude and latitude), input filename is init\_float. 1560 1553 Its format is: \\ 1561 { \scriptsize\texttt{Long Lat depth nisobfl ngrpfl itrash}}1554 { \texttt{Long Lat depth nisobfl ngrpfl itrash}} 1562 1555 1563 1556 \noindent with: … … 1573 1566 \noindent Example: \\ 1574 1567 \noindent 1575 { \scriptsize1568 { 1576 1569 \texttt{ 1577 1570 20.0 0.0 0.0 0 1 1 \\ … … 1622 1615 %------------------------------------------nam_diaharm---------------------------------------------------- 1623 1616 % 1624 \nlst{nam_diaharm} 1617 \begin{listing} 1618 \nlst{nam_diaharm} 1619 \caption{\texttt{nam\_diaharm}} 1620 \label{lst:nam_diaharm} 1621 \end{listing} 1625 1622 %---------------------------------------------------------------------------------------------------------- 1626 1623 … … 1670 1667 %------------------------------------------nam_diadct---------------------------------------------------- 1671 1668 1672 \nlst{nam_diadct} 1669 \begin{listing} 1670 \nlst{nam_diadct} 1671 \caption{\texttt{nam\_diadct}} 1672 \label{lst:nam_diadct} 1673 \end{listing} 1673 1674 %------------------------------------------------------------------------------------------------------------- 1674 1675 … … 1704 1705 1705 1706 Each section is defined by: \\ 1706 \noindent { \scriptsize\texttt{long1 lat1 long2 lat2 nclass (ok/no)strpond (no)ice section\_name}} \\1707 \noindent { \texttt{long1 lat1 long2 lat2 nclass (ok/no)strpond (no)ice section\_name}} \\ 1707 1708 with: 1708 1709 … … 1721 1722 1722 1723 \noindent If nclass $\neq$ 0, the next lines contain the class type and the nclass bounds: \\ 1723 { \scriptsize1724 { 1724 1725 \texttt{ 1725 1726 long1 lat1 long2 lat2 nclass (ok/no)strpond (no)ice section\_name \\ … … 1754 1755 and the ATL\_Cuba\_Florida with 4 temperature clases (5 class bounds), are shown: \\ 1755 1756 \noindent 1756 { \scriptsize1757 { 1757 1758 \texttt{ 1758 1759 -68. -54.5 -60. -64.7 00 okstrpond noice ACC\_Drake\_Passage \\ … … 1769 1770 1770 1771 The output format is: \\ 1771 { \scriptsize1772 { 1772 1773 \texttt{ 1773 1774 date, time-step number, section number, \\ … … 1791 1792 1792 1793 \begin{table} 1793 \scriptsize1794 1794 \begin{tabular}{|l|l|l|l|l|} 1795 1795 \hline … … 2011 2011 %>>>>>>>>>>>>>>>>>>>>>>>>>>>> 2012 2012 \begin{figure}[!t] 2013 \begin{center} 2014 \includegraphics[width=\textwidth]{Fig_mask_subasins} 2015 \caption{ 2016 \protect\label{fig:DIA_mask_subasins} 2017 Decomposition of the World Ocean (here ORCA2) into sub-basin used in to 2018 compute the heat and salt transports as well as the meridional stream-function: 2019 Atlantic basin (red), Pacific basin (green), Indian basin (bleue), Indo-Pacific basin (bleue+green). 2020 Note that semi-enclosed seas (Red, Med and Baltic seas) as well as Hudson Bay are removed from the sub-basins. 2021 Note also that the Arctic Ocean has been split into Atlantic and Pacific basins along the North fold line. 2022 } 2023 \end{center} 2013 \centering 2014 \includegraphics[width=\textwidth]{Fig_mask_subasins} 2015 \caption[Decomposition of the World Ocean to compute transports as well as 2016 the meridional stream-function]{ 2017 Decomposition of the World Ocean (here ORCA2) into sub-basin used in to 2018 compute the heat and salt transports as well as the meridional stream-function: 2019 Atlantic basin (red), Pacific basin (green), 2020 Indian basin (blue), Indo-Pacific basin (blue+green). 2021 Note that semi-enclosed seas (Red, Med and Baltic seas) as well as 2022 Hudson Bay are removed from the sub-basins. 2023 Note also that the Arctic Ocean has been split into Atlantic and 2024 Pacific basins along the North fold line. 2025 } 2026 \label{fig:DIA_mask_subasins} 2024 2027 \end{figure} 2025 2028 %>>>>>>>>>>>>>>>>>>>>>>>>>>>> … … 2049 2052 %------------------------------------------namptr----------------------------------------- 2050 2053 2051 \nlst{namptr} 2054 \begin{listing} 2055 \nlst{namptr} 2056 \caption{\texttt{namptr}} 2057 \label{lst:namptr} 2058 \end{listing} 2052 2059 %----------------------------------------------------------------------------------------- 2053 2060 … … 2059 2066 %------------------------------------------nam_dia25h------------------------------------- 2060 2067 2061 \nlst{nam_dia25h} 2068 \begin{listing} 2069 \nlst{nam_dia25h} 2070 \caption{\texttt{nam\_dia25h}} 2071 \label{lst:nam_dia25h} 2072 \end{listing} 2062 2073 %----------------------------------------------------------------------------------------- 2063 2074 … … 2074 2085 %------------------------------------------nam_diatmb----------------------------------------------------- 2075 2086 2076 \nlst{nam_diatmb} 2087 \begin{listing} 2088 \nlst{nam_diatmb} 2089 \caption{\texttt{nam\_diatmb}} 2090 \label{lst:nam_diatmb} 2091 \end{listing} 2077 2092 %---------------------------------------------------------------------------------------------------------- 2078 2093
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