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Changeset 12928 for NEMO/branches/2019/dev_r11078_OSMOSIS_IMMERSE_Nurser/src/TOP/PISCES/P4Z/p4zmort.F90 – NEMO

Ignore:
Timestamp:
2020-05-14T21:46:00+02:00 (4 years ago)
Author:
smueller
Message:

Synchronizing with /NEMO/trunk@12925 (ticket #2170)

Location:
NEMO/branches/2019/dev_r11078_OSMOSIS_IMMERSE_Nurser
Files:
2 edited

Legend:

Unmodified
Added
Removed

  • NEMO/branches/2019/dev_r11078_OSMOSIS_IMMERSE_Nurser

    • Property svn:externals

      •  

        old new  
        66^/vendors/FCM@HEAD            ext/FCM 
        77^/vendors/IOIPSL@HEAD         ext/IOIPSL 
         8 
         9# SETTE 
         10^/utils/CI/sette@HEAD         sette 

  • NEMO/branches/2019/dev_r11078_OSMOSIS_IMMERSE_Nurser/src/TOP/PISCES/P4Z/p4zmort.F90

    r12178 r12928  
    2929   REAL(wp), PUBLIC ::   mprat2   !: 
    3030 
     31   !! * Substitutions 
     32#  include "do_loop_substitute.h90" 
    3133   !!---------------------------------------------------------------------- 
    3234   !! NEMO/TOP 4.0 , NEMO Consortium (2018) 
    … …  
    3638CONTAINS 
    3739 
    38    SUBROUTINE p4z_mort( kt ) 
     40   SUBROUTINE p4z_mort( kt, Kbb, Krhs ) 
    3941      !!--------------------------------------------------------------------- 
    4042      !!                     ***  ROUTINE p4z_mort  *** 
    … …  
    4648      !!--------------------------------------------------------------------- 
    4749      INTEGER, INTENT(in) ::   kt ! ocean time step 
    48       !!--------------------------------------------------------------------- 
    49       ! 
    50       CALL p4z_nano            ! nanophytoplankton 
    51       ! 
    52       CALL p4z_diat            ! diatoms 
     50      INTEGER, INTENT(in) ::   Kbb, Krhs  ! time level indices 
     51      !!--------------------------------------------------------------------- 
     52      ! 
     53      CALL p4z_nano( Kbb, Krhs )            ! nanophytoplankton 
     54      ! 
     55      CALL p4z_diat( Kbb, Krhs )            ! diatoms 
    5356      ! 
    5457   END SUBROUTINE p4z_mort 
    5558 
    5659 
    57    SUBROUTINE p4z_nano 
     60   SUBROUTINE p4z_nano( Kbb, Krhs ) 
    5861      !!--------------------------------------------------------------------- 
    5962      !!                     ***  ROUTINE p4z_nano  *** 
    … …  
    6366      !! ** Method  : - ??? 
    6467      !!--------------------------------------------------------------------- 
     68      INTEGER, INTENT(in) ::   Kbb, Krhs  ! time level indices 
    6569      INTEGER  ::   ji, jj, jk 
    6670      REAL(wp) ::   zsizerat, zcompaph 
    … …  
    7377      ! 
    7478      prodcal(:,:,:) = 0._wp   ! calcite production variable set to zero 
    75       DO jk = 1, jpkm1 
    76          DO jj = 1, jpj 
    77             DO ji = 1, jpi 
    78                zcompaph = MAX( ( trb(ji,jj,jk,jpphy) - 1e-8 ), 0.e0 ) 
    79                !     When highly limited by macronutrients, very small cells  
    80                !     dominate the community. As a consequence, aggregation 
    81                !     due to turbulence is negligible. Mortality is also set 
    82                !     to 0 
    83                zsizerat = MIN(1., MAX( 0., (quotan(ji,jj,jk) - 0.2) / 0.3) ) * trb(ji,jj,jk,jpphy) 
    84                !     Squared mortality of Phyto similar to a sedimentation term during 
    85                !     blooms (Doney et al. 1996) 
    86                zrespp = wchl * 1.e6 * xstep * xdiss(ji,jj,jk) * zcompaph * zsizerat  
    87  
    88                !     Phytoplankton mortality. This mortality loss is slightly 
    89                !     increased when nutrients are limiting phytoplankton growth 
    90                !     as observed for instance in case of iron limitation. 
    91                ztortp = mprat * xstep * zcompaph / ( xkmort + trb(ji,jj,jk,jpphy) ) * zsizerat 
    92  
    93                zmortp = zrespp + ztortp 
    94  
    95                !   Update the arrays TRA which contains the biological sources and sinks 
    96  
    97                zfactfe = trb(ji,jj,jk,jpnfe)/(trb(ji,jj,jk,jpphy)+rtrn) 
    98                zfactch = trb(ji,jj,jk,jpnch)/(trb(ji,jj,jk,jpphy)+rtrn) 
    99                tra(ji,jj,jk,jpphy) = tra(ji,jj,jk,jpphy) - zmortp 
    100                tra(ji,jj,jk,jpnch) = tra(ji,jj,jk,jpnch) - zmortp * zfactch 
    101                tra(ji,jj,jk,jpnfe) = tra(ji,jj,jk,jpnfe) - zmortp * zfactfe 
    102                zprcaca = xfracal(ji,jj,jk) * zmortp 
    103                ! 
    104                prodcal(ji,jj,jk) = prodcal(ji,jj,jk) + zprcaca  ! prodcal=prodcal(nanophy)+prodcal(microzoo)+prodcal(mesozoo) 
    105                ! 
    106                zfracal = 0.5 * xfracal(ji,jj,jk) 
    107                tra(ji,jj,jk,jpdic) = tra(ji,jj,jk,jpdic) - zprcaca 
    108                tra(ji,jj,jk,jptal) = tra(ji,jj,jk,jptal) - 2. * zprcaca 
    109                tra(ji,jj,jk,jpcal) = tra(ji,jj,jk,jpcal) + zprcaca 
    110                tra(ji,jj,jk,jpgoc) = tra(ji,jj,jk,jpgoc) + zfracal * zmortp 
    111                tra(ji,jj,jk,jppoc) = tra(ji,jj,jk,jppoc) + ( 1. - zfracal ) * zmortp 
    112                prodpoc(ji,jj,jk) = prodpoc(ji,jj,jk) + ( 1. - zfracal ) * zmortp 
    113                prodgoc(ji,jj,jk) = prodgoc(ji,jj,jk) + zfracal * zmortp 
    114                tra(ji,jj,jk,jpsfe) = tra(ji,jj,jk,jpsfe) + ( 1. - zfracal ) * zmortp * zfactfe 
    115                tra(ji,jj,jk,jpbfe) = tra(ji,jj,jk,jpbfe) + zfracal * zmortp * zfactfe 
    116             END DO 
    117          END DO 
    118       END DO 
    119       ! 
    120        IF(ln_ctl)   THEN  ! print mean trends (used for debugging) 
     79      DO_3D_11_11( 1, jpkm1 ) 
     80         zcompaph = MAX( ( tr(ji,jj,jk,jpphy,Kbb) - 1e-8 ), 0.e0 ) 
     81         !     When highly limited by macronutrients, very small cells  
     82         !     dominate the community. As a consequence, aggregation 
     83         !     due to turbulence is negligible. Mortality is also set 
     84         !     to 0 
     85         zsizerat = MIN(1., MAX( 0., (quotan(ji,jj,jk) - 0.2) / 0.3) ) * tr(ji,jj,jk,jpphy,Kbb) 
     86         !     Squared mortality of Phyto similar to a sedimentation term during 
     87         !     blooms (Doney et al. 1996) 
     88         zrespp = wchl * 1.e6 * xstep * xdiss(ji,jj,jk) * zcompaph * zsizerat  
     89 
     90         !     Phytoplankton mortality. This mortality loss is slightly 
     91         !     increased when nutrients are limiting phytoplankton growth 
     92         !     as observed for instance in case of iron limitation. 
     93         ztortp = mprat * xstep * zcompaph / ( xkmort + tr(ji,jj,jk,jpphy,Kbb) ) * zsizerat 
     94 
     95         zmortp = zrespp + ztortp 
     96 
     97         !   Update the arrays TRA which contains the biological sources and sinks 
     98 
     99         zfactfe = tr(ji,jj,jk,jpnfe,Kbb)/(tr(ji,jj,jk,jpphy,Kbb)+rtrn) 
     100         zfactch = tr(ji,jj,jk,jpnch,Kbb)/(tr(ji,jj,jk,jpphy,Kbb)+rtrn) 
     101         tr(ji,jj,jk,jpphy,Krhs) = tr(ji,jj,jk,jpphy,Krhs) - zmortp 
     102         tr(ji,jj,jk,jpnch,Krhs) = tr(ji,jj,jk,jpnch,Krhs) - zmortp * zfactch 
     103         tr(ji,jj,jk,jpnfe,Krhs) = tr(ji,jj,jk,jpnfe,Krhs) - zmortp * zfactfe 
     104         zprcaca = xfracal(ji,jj,jk) * zmortp 
     105         ! 
     106         prodcal(ji,jj,jk) = prodcal(ji,jj,jk) + zprcaca  ! prodcal=prodcal(nanophy)+prodcal(microzoo)+prodcal(mesozoo) 
     107         ! 
     108         zfracal = 0.5 * xfracal(ji,jj,jk) 
     109         tr(ji,jj,jk,jpdic,Krhs) = tr(ji,jj,jk,jpdic,Krhs) - zprcaca 
     110         tr(ji,jj,jk,jptal,Krhs) = tr(ji,jj,jk,jptal,Krhs) - 2. * zprcaca 
     111         tr(ji,jj,jk,jpcal,Krhs) = tr(ji,jj,jk,jpcal,Krhs) + zprcaca 
     112         tr(ji,jj,jk,jpgoc,Krhs) = tr(ji,jj,jk,jpgoc,Krhs) + zfracal * zmortp 
     113         tr(ji,jj,jk,jppoc,Krhs) = tr(ji,jj,jk,jppoc,Krhs) + ( 1. - zfracal ) * zmortp 
     114         prodpoc(ji,jj,jk) = prodpoc(ji,jj,jk) + ( 1. - zfracal ) * zmortp 
     115         prodgoc(ji,jj,jk) = prodgoc(ji,jj,jk) + zfracal * zmortp 
     116         tr(ji,jj,jk,jpsfe,Krhs) = tr(ji,jj,jk,jpsfe,Krhs) + ( 1. - zfracal ) * zmortp * zfactfe 
     117         tr(ji,jj,jk,jpbfe,Krhs) = tr(ji,jj,jk,jpbfe,Krhs) + zfracal * zmortp * zfactfe 
     118      END_3D 
     119      ! 
     120       IF(sn_cfctl%l_prttrc)   THEN  ! print mean trends (used for debugging) 
    121121         WRITE(charout, FMT="('nano')") 
    122122         CALL prt_ctl_trc_info(charout) 
    123          CALL prt_ctl_trc(tab4d=tra, mask=tmask, clinfo=ctrcnm) 
     123         CALL prt_ctl_trc(tab4d=tr(:,:,:,:,Krhs), mask=tmask, clinfo=ctrcnm) 
    124124       ENDIF 
    125125      ! 
    … …  
    129129 
    130130 
    131    SUBROUTINE p4z_diat 
     131   SUBROUTINE p4z_diat( Kbb, Krhs ) 
    132132      !!--------------------------------------------------------------------- 
    133133      !!                     ***  ROUTINE p4z_diat  *** 
    … …  
    137137      !! ** Method  : - ??? 
    138138      !!--------------------------------------------------------------------- 
     139      INTEGER, INTENT(in) ::   Kbb, Krhs  ! time level indices 
    139140      INTEGER  ::   ji, jj, jk 
    140141      REAL(wp) ::   zfactfe,zfactsi,zfactch, zcompadi 
    … …  
    151152      !     ------------------------------------------------------------ 
    152153 
    153       DO jk = 1, jpkm1 
    154          DO jj = 1, jpj 
    155             DO ji = 1, jpi 
    156  
    157                zcompadi = MAX( ( trb(ji,jj,jk,jpdia) - 1e-9), 0. ) 
    158  
    159                !    Aggregation term for diatoms is increased in case of nutrient 
    160                !    stress as observed in reality. The stressed cells become more 
    161                !    sticky and coagulate to sink quickly out of the euphotic zone 
    162                !     ------------------------------------------------------------ 
    163                !  Phytoplankton respiration  
    164                !     ------------------------ 
    165                zlim2   = xlimdia(ji,jj,jk) * xlimdia(ji,jj,jk) 
    166                zlim1   = 0.25 * ( 1. - zlim2 ) / ( 0.25 + zlim2 )  
    167                zrespp2 = 1.e6 * xstep * (  wchld + wchldm * zlim1 ) * xdiss(ji,jj,jk) * zcompadi * trb(ji,jj,jk,jpdia) 
    168  
    169                !     Phytoplankton mortality.  
    170                !     ------------------------ 
    171                ztortp2 = mprat2 * xstep * trb(ji,jj,jk,jpdia)  / ( xkmort + trb(ji,jj,jk,jpdia) ) * zcompadi  
    172  
    173                zmortp2 = zrespp2 + ztortp2 
    174  
    175                !   Update the arrays tra which contains the biological sources and sinks 
    176                !   --------------------------------------------------------------------- 
    177                zfactch = trb(ji,jj,jk,jpdch) / ( trb(ji,jj,jk,jpdia) + rtrn ) 
    178                zfactfe = trb(ji,jj,jk,jpdfe) / ( trb(ji,jj,jk,jpdia) + rtrn ) 
    179                zfactsi = trb(ji,jj,jk,jpdsi) / ( trb(ji,jj,jk,jpdia) + rtrn ) 
    180                tra(ji,jj,jk,jpdia) = tra(ji,jj,jk,jpdia) - zmortp2  
    181                tra(ji,jj,jk,jpdch) = tra(ji,jj,jk,jpdch) - zmortp2 * zfactch 
    182                tra(ji,jj,jk,jpdfe) = tra(ji,jj,jk,jpdfe) - zmortp2 * zfactfe 
    183                tra(ji,jj,jk,jpdsi) = tra(ji,jj,jk,jpdsi) - zmortp2 * zfactsi 
    184                tra(ji,jj,jk,jpgsi) = tra(ji,jj,jk,jpgsi) + zmortp2 * zfactsi 
    185                tra(ji,jj,jk,jpgoc) = tra(ji,jj,jk,jpgoc) + zrespp2 + 0.5 * ztortp2 
    186                tra(ji,jj,jk,jppoc) = tra(ji,jj,jk,jppoc) + 0.5 * ztortp2 
    187                prodpoc(ji,jj,jk) = prodpoc(ji,jj,jk) + 0.5 * ztortp2 
    188                prodgoc(ji,jj,jk) = prodgoc(ji,jj,jk) + zrespp2 + 0.5 * ztortp2 
    189                tra(ji,jj,jk,jpsfe) = tra(ji,jj,jk,jpsfe) + 0.5 * ztortp2 * zfactfe 
    190                tra(ji,jj,jk,jpbfe) = tra(ji,jj,jk,jpbfe) + ( zrespp2 + 0.5 * ztortp2 ) * zfactfe 
    191             END DO 
    192          END DO 
    193       END DO 
    194       ! 
    195       IF(ln_ctl) THEN      ! print mean trends (used for debugging) 
     154      DO_3D_11_11( 1, jpkm1 ) 
     155 
     156         zcompadi = MAX( ( tr(ji,jj,jk,jpdia,Kbb) - 1e-9), 0. ) 
     157 
     158         !    Aggregation term for diatoms is increased in case of nutrient 
     159         !    stress as observed in reality. The stressed cells become more 
     160         !    sticky and coagulate to sink quickly out of the euphotic zone 
     161         !     ------------------------------------------------------------ 
     162         !  Phytoplankton respiration  
     163         !     ------------------------ 
     164         zlim2   = xlimdia(ji,jj,jk) * xlimdia(ji,jj,jk) 
     165         zlim1   = 0.25 * ( 1. - zlim2 ) / ( 0.25 + zlim2 )  
     166         zrespp2 = 1.e6 * xstep * (  wchld + wchldm * zlim1 ) * xdiss(ji,jj,jk) * zcompadi * tr(ji,jj,jk,jpdia,Kbb) 
     167 
     168         !     Phytoplankton mortality.  
     169         !     ------------------------ 
     170         ztortp2 = mprat2 * xstep * tr(ji,jj,jk,jpdia,Kbb)  / ( xkmort + tr(ji,jj,jk,jpdia,Kbb) ) * zcompadi  
     171 
     172         zmortp2 = zrespp2 + ztortp2 
     173 
     174         !   Update the arrays tr(:,:,:,:,Krhs) which contains the biological sources and sinks 
     175         !   --------------------------------------------------------------------- 
     176         zfactch = tr(ji,jj,jk,jpdch,Kbb) / ( tr(ji,jj,jk,jpdia,Kbb) + rtrn ) 
     177         zfactfe = tr(ji,jj,jk,jpdfe,Kbb) / ( tr(ji,jj,jk,jpdia,Kbb) + rtrn ) 
     178         zfactsi = tr(ji,jj,jk,jpdsi,Kbb) / ( tr(ji,jj,jk,jpdia,Kbb) + rtrn ) 
     179         tr(ji,jj,jk,jpdia,Krhs) = tr(ji,jj,jk,jpdia,Krhs) - zmortp2  
     180         tr(ji,jj,jk,jpdch,Krhs) = tr(ji,jj,jk,jpdch,Krhs) - zmortp2 * zfactch 
     181         tr(ji,jj,jk,jpdfe,Krhs) = tr(ji,jj,jk,jpdfe,Krhs) - zmortp2 * zfactfe 
     182         tr(ji,jj,jk,jpdsi,Krhs) = tr(ji,jj,jk,jpdsi,Krhs) - zmortp2 * zfactsi 
     183         tr(ji,jj,jk,jpgsi,Krhs) = tr(ji,jj,jk,jpgsi,Krhs) + zmortp2 * zfactsi 
     184         tr(ji,jj,jk,jpgoc,Krhs) = tr(ji,jj,jk,jpgoc,Krhs) + zrespp2 + 0.5 * ztortp2 
     185         tr(ji,jj,jk,jppoc,Krhs) = tr(ji,jj,jk,jppoc,Krhs) + 0.5 * ztortp2 
     186         prodpoc(ji,jj,jk) = prodpoc(ji,jj,jk) + 0.5 * ztortp2 
     187         prodgoc(ji,jj,jk) = prodgoc(ji,jj,jk) + zrespp2 + 0.5 * ztortp2 
     188         tr(ji,jj,jk,jpsfe,Krhs) = tr(ji,jj,jk,jpsfe,Krhs) + 0.5 * ztortp2 * zfactfe 
     189         tr(ji,jj,jk,jpbfe,Krhs) = tr(ji,jj,jk,jpbfe,Krhs) + ( zrespp2 + 0.5 * ztortp2 ) * zfactfe 
     190      END_3D 
     191      ! 
     192      IF(sn_cfctl%l_prttrc) THEN      ! print mean trends (used for debugging) 
    196193         WRITE(charout, FMT="('diat')") 
    197194         CALL prt_ctl_trc_info(charout) 
    198          CALL prt_ctl_trc(tab4d=tra, mask=tmask, clinfo=ctrcnm) 
     195         CALL prt_ctl_trc(tab4d=tr(:,:,:,:,Krhs), mask=tmask, clinfo=ctrcnm) 
    199196      ENDIF 
    200197      ! 
    … …  
    227224      ENDIF 
    228225      ! 
    229       REWIND( numnatp_ref )              ! Namelist nampismort in reference namelist : Pisces phytoplankton 
    230226      READ  ( numnatp_ref, namp4zmort, IOSTAT = ios, ERR = 901) 
    231227901   IF( ios /= 0 )   CALL ctl_nam ( ios , 'namp4zmort in reference namelist' ) 
    232       REWIND( numnatp_cfg )              ! Namelist nampismort in configuration namelist : Pisces phytoplankton 
    233228      READ  ( numnatp_cfg, namp4zmort, IOSTAT = ios, ERR = 902 ) 
    234229902   IF( ios >  0 )   CALL ctl_nam ( ios , 'namp4zmort in configuration namelist' ) 
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