Changeset 14177

Timestamp:

2020-12-15T22:18:46+01:00 (3 years ago)

Author:

nicolasmartin

Message:

Fix undefined refs for namelists and bibliography

Location:

NEMO/trunk/doc/latex/NEMO/subfiles

Files:

• chap_DYN.tex (modified) (1 diff)
• chap_OBS.tex (modified) (5 diffs)
• chap_SBC.tex (modified) (3 diffs)
• chap_ZDF.tex (modified) (2 diffs)

NEMO/trunk/doc/latex/NEMO/subfiles/chap_DYN.tex

@@ -763 +763 @@
 which imposes a very small time step when an explicit time stepping is used.
 Two methods are proposed to allow a longer time step for the three-dimensional equations:
-the filtered free surface, which is a modification of the continuous equations (see \autoref{eq:MB_flt?}),
+the filtered free surface, which is a modification of the continuous equations \iffalse (see \autoref{eq:MB_flt?}) \fi
 and the split-explicit free surface described below.
 The extra term introduced in the filtered method is calculated implicitly,

NEMO/trunk/doc/latex/NEMO/subfiles/chap_OBS.tex

@@ -892 +892 @@
 \subsubsection{Running}
 
-The simplest way to use the executable is to edit and append the \textbf{sao.nml} namelist to
+The simplest way to use the executable is to edit and append the \nam{sao}{sao} namelist to
 a full \NEMO\ namelist and then to run the executable as if it were nemo.exe.
 
@@ -914 +914 @@
 For example, to read the second time counter from a single file the namelist would be.
 
-\begin{forlines}
+\begin{listing}
+%  \nlst{namsao}
+  \begin{forlines}
 !----------------------------------------------------------------------
 !       namsao Standalone obs_oper namelist
@@ -924 +926 @@
    nn_sao_idx = 2
 /
-\end{forlines}
+  \end{forlines}
+  \caption{\forcode{&namsao}}
+  \label{lst:namsao}
+\end{listing}
 
 %% =================================================================================================
@@ -1119 +1124 @@
 To plot some data run IDL and then:
 
-\begin{minted}{idl}
+\begin{verbatim}
 IDL> dataplot, "filename"
-\end{minted}
+\end{verbatim}
 
 To read multiple files into dataplot,
@@ -1127 +1132 @@
 the easiest method is to use the spawn command to generate a list of files which can then be passed to dataplot.
 
-\begin{minted}{idl}
+\begin{verbatim}
 IDL> spawn, 'ls profb*.nc', files
 IDL> dataplot, files
-\end{minted}
+\end{verbatim}
 
 \autoref{fig:OBS_dataplotmain} shows the main window which is launched when dataplot starts.

NEMO/trunk/doc/latex/NEMO/subfiles/chap_SBC.tex

@@ -664 +664 @@
 For the cool-skin scheme parametrization COARE and ECMWF algorithms share the same
 basis: \citet{fairall.bradley.ea_JGRO96}. With some minor updates based
-on \citet{zeng.beljaars_GRL05} for ECMWF, and \citet{fairall.ea_19} for COARE
+on \citet{zeng.beljaars_GRL05} for ECMWF \iffalse, and \citet{fairall.ea_19?} for COARE \fi
 3.6.
 
@@ -671 +671 @@
 turbulence input from Langmuir circulation).
 
-Importantly, COARE warm-layer scheme \citep{fairall.ea_19} includes a prognostic
+Importantly, COARE warm-layer scheme \iffalse \citep{fairall.ea_19?} \fi includes a prognostic
 equation for the thickness of the warm-layer, while it is considered as constant
 in the ECWMF algorithm.
@@ -971 +971 @@
 and tidal analysis in the model framework. This includes the computation of the gravitational
 surface forcing, as well as support for lateral forcing at open boundaries (see
-\autoref{subsec:LBC_bdy_tides}) and tidal harmonic analysis (see
-\autoref{subsec:DIA_diamlr} and \autoref{subsec:DIA_diadetide}). The module is
+\autoref{subsec:LBC_bdy_tides}) and tidal harmonic analysis \iffalse (see
+\autoref{subsec:DIA_diamlr?} and \autoref{subsec:DIA_diadetide?}) \fi . The module is
 activated with \np[=.true.]{ln_tide}{ln\_tide} in namelist
 \nam{_tide}{\_tide}. It provides the same 34 tidal constituents that are

NEMO/trunk/doc/latex/NEMO/subfiles/chap_ZDF.tex

@@ -731 +731 @@
 \subsubsection{Evolution of the boundary layer depth}
 
-The prognostic equation for the depth of the neutral/unstable boundary layer is given by \citep{grant+etal18},
+The prognostic equation for the depth of the neutral/unstable boundary layer is given by \iffalse \citep{grant+etal18?}, \fi
 
 \begin{equation}
@@ -747 +747 @@
 equation for the case when the pycnocline has a finite thickness,
 based on the potential energy budget of the OSBL, is the leading term
-\citep{grant+etal18} of a generalization of that used in mixed-layer
+\iffalse \citep{grant+etal18?} \fi of a generalization of that used in mixed-layer
 models e.g.\ \citet{kraus.turner_T67}, in which the thickness of the pycnocline is taken to be zero.