Changeset 15428
- Timestamp:
- 2021-10-21T15:25:37+02:00 (2 years ago)
- Location:
- NEMO/branches/2021/dev_r14383_PISCES_NEWDEV_PISCO/cfgs
- Files:
-
- 4 edited
-
ORCA2_ICE_PISCES/EXPREF/namelist_pisces_cfg (modified) (1 diff)
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SHARED/field_def_nemo-pisces.xml (modified) (1 diff)
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SHARED/namelist_pisces_ref (modified) (8 diffs)
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SHARED/namelist_sediment_ref (modified) (5 diffs)
Legend:
- Unmodified
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- Removed
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NEMO/branches/2021/dev_r14383_PISCES_NEWDEV_PISCO/cfgs/ORCA2_ICE_PISCES/EXPREF/namelist_pisces_cfg
r12377 r15428 86 86 ln_ironice = .true. ! boolean for Fe input from sea ice 87 87 ln_hydrofe = .true. ! boolean for from hydrothermal vents 88 ln_dust_inp = .true. ! boolean for dust input 88 89 / 89 90 !----------------------------------------------------------------------- -
NEMO/branches/2021/dev_r14383_PISCES_NEWDEV_PISCO/cfgs/SHARED/field_def_nemo-pisces.xml
r15076 r15428 168 168 <field id="FlxPOS" long_name="POS burial rate" unit="g/cm2/s" /> 169 169 <field id="Flxtot" long_name="total burial flux" unit="g/cm2/s" /> 170 <field id="Rstepros" long_name="Number of iterations" unit="-" /> 170 171 </field_group> 171 172 -
NEMO/branches/2021/dev_r14383_PISCES_NEWDEV_PISCO/cfgs/SHARED/namelist_pisces_ref
r15284 r15428 67 67 concnnh4 = 1.E-6 ! NH4 half saturation for phyto 68 68 concdnh4 = 3.E-6 ! NH4 half saturation for diatoms 69 concnfer = 3.E-9! Iron half saturation for phyto70 concdfer = 9.E-9 ! Iron half saturation for diatoms69 concnfer = 1.7E-9 ! Iron half saturation for phyto 70 concdfer = 5.E-9 ! Iron half saturation for diatoms 71 71 concbfe = 3.E-11 ! Iron half-saturation for DOC remin. 72 72 concbnh4 = 3.E-7 ! NH4 half saturation for DOC remin. … … 79 79 xksi2 = 20E-6 ! half saturation constant for Si/C 80 80 xkdoc = 417.E-6 ! half-saturation constant of DOC remineralization 81 qnfelim = 9.E-6! Optimal quota of phyto82 qdfelim = 9.E-6! Optimal quota of diatoms81 qnfelim = 10.E-6 ! Optimal quota of phyto 82 qdfelim = 10.E-6 ! Optimal quota of diatoms 83 83 caco3r = 0.2 ! mean rain ratio 84 84 oxymin = 1.E-6 ! Half-saturation constant for anoxia … … 96 96 concppo4 = 7E-7 ! PO4 half saturation for picophytoplankton 97 97 concdpo4 = 3E-6 ! PO4 half saturation for diatoms 98 concnfer = 6E-9 ! Iron half saturation for phyto99 concpfer = 2E-9 ! Iron half saturation for picophytoplankton100 concdfer = 9E-9! Iron half saturation for diatoms98 concnfer = 3E-9 ! Iron half saturation for phyto 99 concpfer = 1E-9 ! Iron half saturation for picophytoplankton 100 concdfer = 4.5E-9 ! Iron half saturation for diatoms 101 101 concbfe = 3E-11 ! Half-saturation for Fe limitation of Bacteria 102 102 concbnh4 = 4.E-7 ! NH4 half saturation for phyto … … 112 112 xksi2 = 20E-6 ! half saturation constant for Si/C 113 113 xkdoc = 417.E-6 ! half-saturation constant of DOC remineralization 114 caco3r = 0. 5! mean rain ratio114 caco3r = 0.3 ! mean rain ratio 115 115 oxymin = 1.E-6 ! Half-saturation constant for anoxia 116 116 / … … 118 118 &namp5zquota ! parameters for nutrient limitations PISCES quota - ln_p5z 119 119 !----------------------------------------------------------------------- 120 qfnopt = 1 0.E-6 ! Optimal Fe quota of nanophyto121 qfpopt = 1 0.E-6 ! Optimal Fe quota of picophyto122 qfdopt = 1 0.E-6 ! Optimal quota of diatoms120 qfnopt = 12.E-6 ! Optimal Fe quota of nanophyto 121 qfpopt = 12.E-6 ! Optimal Fe quota of picophyto 122 qfdopt = 12.E-6 ! Optimal quota of diatoms 123 123 qnnmin = 0.61 ! Minimal N quota for nano 124 124 qnnmax = 1.25 ! Maximal N quota for nano … … 151 151 &namp4zprod ! parameters for phytoplankton growth for PISCES std - ln_p4z 152 152 !----------------------------------------------------------------------- 153 pislopen = 2. 5! P-I slope154 pisloped = 2. 5! P-I slope for diatoms153 pislopen = 2. ! P-I slope 154 pisloped = 2. ! P-I slope for diatoms 155 155 xadap = 0. ! Adaptation factor to low light 156 156 excretn = 0.05 ! excretion ratio of phytoplankton … … 292 292 xprefn = 1.0 ! Microzoo preference for Nanophyto 293 293 xprefp = 1.0 ! Microzoo preference for picophyto 294 xprefd = 0.8! Microzoo preference for Diatoms294 xprefd = 1.0 ! Microzoo preference for Diatoms 295 295 xprefz = 0. ! Microzoo preference for microzooplankton 296 296 xthreshdia = 1.E-8 ! Diatoms feeding threshold for microzooplankton … … 365 365 ln_ironice = .false. ! boolean for Fe input from sea ice 366 366 ln_hydrofe = .false. ! boolean for from hydrothermal vents 367 ln_dust_inp = .false. ! boolean for dust input 367 368 sedfeinput = 2.e-9 ! Coastal release of Iron 368 369 distcoast = 5.e3 ! Distance off the coast for Iron from sediments -
NEMO/branches/2021/dev_r14383_PISCES_NEWDEV_PISCO/cfgs/SHARED/namelist_sediment_ref
r15076 r15428 13 13 !----------------------------------------------------------------------- 14 14 ln_sed_2way = .false. ! 2 way coupling with pisces 15 nrosorder = 3 ! Order of the rosenbrock methode (3,4) 16 rosatol = 1.E-4 ! Tolerance for the absolute error 17 rosrtol = 1.E-4 ! Tolerance for the relative error 15 18 / 16 19 !----------------------------------------------------------------------- … … 80 83 seddiag2d(20) = 'Flxtot ' , 'Total burial flux ', 'mol/cm2/s' 81 84 seddiag2d(21) = 'dzdep ' , 'Sedimentation rate ', 'cm/s' 85 seddiag2d(22) = 'Rstepros ' , 'Number of iterations ', '-' 82 86 / 83 87 !----------------------------------------------------------------------- 84 88 &nam_inorg ! Inorganic chemistry in sediments (CacO3, Si) 85 89 !----------------------------------------------------------------------- 86 rcopal = 0.1 ! Reactivity for clay [l.mol-1.an-1] 87 dcoef = 8.0E-6 ! Diffusion coefficient in sediments (in cm**2/s) 88 rccal = 1.4 ! Dissolution rate of calcite [in yr-1] 90 rcopal = 1.25 ! Reactivity for clay [l.mol-1.an-1] 91 rccal = 0.1 ! Dissolution rate of calcite [in yr-1] 89 92 rcligc = 0.1 ! Degradation rate of ligands [in yr-1] 90 93 ratligc = 1.E-4 ! L/C ratio in POC … … 93 96 &nam_poc ! parameters for the redox reactions of the sediment module 94 97 !----------------------------------------------------------------------- 95 redO2 = 1 40. ! Redfield coef for Oxygen98 redO2 = 138. ! Redfield coef for Oxygen 96 99 redNo3 = 16. ! Redfield coef for Nitrate 97 100 redPo4 = 1. ! Redfield coef for Phosphate 98 redC = 1 22. ! Redfield coef for Carbon101 redC = 117. ! Redfield coef for Carbon 99 102 redfep = 0.05 ! Ration of Fe bound P 100 103 rcorgl = 10. ! Reactivity for labile POC [an-1] … … 102 105 rcorgr = 1.E-4 ! Reactivity for refractory POC [an-1] 103 106 rcnh4 = 1E7 ! Reactivity for O2/NH4 [l.mol-1.an-1] 104 rch2s = 1E 7! Reactivity for O2/H2S [l.mol-1.an-1]105 rcfe2 = 1E9! Reactivity for O2/Fe2+ [l.mol-1.an-1]107 rch2s = 1E8 ! Reactivity for O2/H2S [l.mol-1.an-1] 108 rcfe2 = 5E8 ! Reactivity for O2/Fe2+ [l.mol-1.an-1] 106 109 rcfeh2s = 1E4 ! Reactivity for FEOH/H2S [l.mol-1.an-1] 107 110 rcfeso = 2E6 ! Reactivity for FES/O2 [l.mol-1.an-1] 108 rcfesp = 5E-6! Precipitation of FeS [mol.l-1.an-1]111 rcfesp = 1E-4 ! Precipitation of FeS [mol.l-1.an-1] 109 112 rcfesd = 1.E-3 ! Dissolution of FeS [an-1] 110 113 xksedo2 = 1.E-6 ! Half-saturation constant for oxic remin [mol/l] 111 xksedno3 = 5.E-6 ! Half-saturation constant for denitrification [mol/l]112 xksedfeo = 0.00 7! Half-saturation constant for iron remin [%]113 xksedso4 = 2E-3! Half-saturation constant for SO4 remin [mol/l]114 xksedno3 = 5.E-6 ! Half-saturation constant for denitrification [mol/l] 115 xksedfeo = 0.006 ! Half-saturation constant for iron remin [%] 116 xksedso4 = 5E-4 ! Half-saturation constant for SO4 remin [mol/l] 114 117 / 115 118 !----------------------------------------------------------------------- … … 118 121 dbiot = 8. ! Bioturbation coefficient (in cm2/yr) 119 122 ln_btbz = .true. ! Depth varying bioturbation 120 dbtbzsc = 4.0 ! coefficient for btb attenuation. If no variation, depth of the mixed layer123 dbtbzsc = 5.0 ! coefficient for btb attenuation. If no variation, depth of the mixed layer 121 124 adsnh4 = 4.16 ! Adsorption coefficient of NH4 122 adsfe2 = 0.0! Adsorption coefficient of Fe2125 adsfe2 = 697.0 ! Adsorption coefficient of Fe2 123 126 ln_irrig = .true. ! Bioirrigation in sediment 124 xirrzsc = 1.5! Vertical scale of the attentuation of bioirrigation [cm]127 xirrzsc = 2.0 ! Vertical scale of the attentuation of bioirrigation [cm] 125 128 / 126 129 !-----------------------------------------------------------------------
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