Changeset 2528 for trunk/NEMOGCM/CONFIG/GYRE_LOBSTER
- Timestamp:
- 2010-12-27T18:33:53+01:00 (13 years ago)
- Location:
- trunk/NEMOGCM/CONFIG/GYRE_LOBSTER
- Files:
-
- 3 deleted
- 5 edited
- 2 copied
Legend:
- Unmodified
- Added
- Removed
-
trunk/NEMOGCM/CONFIG/GYRE_LOBSTER/EXP00/AA_job
- Property svn:keywords set to Id
r2521 r2528 97 97 cp ${R_EXPER}/namelist_top namelist_top 98 98 cp ${R_EXPER}/namelist_lobster namelist_lobster 99 cp ${R_EXPER}/iodef.xml .100 cp ${R_EXPER}/xmlio_server.def .101 102 99 ls -alF 103 100 -
trunk/NEMOGCM/CONFIG/GYRE_LOBSTER/EXP00/iodef.xml
r1802 r2528 54 54 <group id="SBC" axis_ref="none" grid_ref="grid_T" > <!-- time step automaticaly defined based on nn_fsbc --> 55 55 56 <field id="emp "description="Net Upward Water Flux" unit="kg/m2/s" />57 <field id="emps "description="concentration/dilution water flux" unit="kg/m2/s" />56 <field id="emp-rnf" description="Net Upward Water Flux" unit="kg/m2/s" /> 57 <field id="emps-rnf" description="concentration/dilution water flux" unit="kg/m2/s" /> 58 58 <field id="snowpre" description="Snow precipitation" unit="kg/m2/s" /> 59 59 <field id="runoffs" description="River Runoffs" unit="Kg/m2/s" /> … … 133 133 <field id="utau" description="Wind Stress along i-axis" unit="N/m2" axis_ref="none" /> 134 134 <field id="uoce" description="ocean current along i-axis" unit="m/s" /> 135 <field id="uoce_eff" description="Effective ocean current along i-axis" unit="m/s" />135 <field id="uoce_eff" description="Effective ocean transport along i-axis" unit="m3/s" /> 136 136 <!-- uoce_eiv: available with key_traldf_eiv and key_diaeiv --> 137 137 <field id="uoce_eiv" description="EIV ocean current along i-axis" unit="m/s" /> 138 138 <!-- uoce_eiv: available with key_trabbl_adv --> 139 139 <field id="uoce_bbl" description="BBL ocean current along i-axis" unit="m/s" /> 140 <field id="ahu_bbl" description="BBL diffusive flux along i-axis" unit="m3/s" axis_ref="none" /> 140 141 <!-- variables available with key_diaar5 --> 141 142 <field id="u_masstr" description="ocean eulerian mass transport along i-axis" unit="kg/s" /> … … 150 151 <field id="vtau" description="Wind Stress along j-axis" unit="N/m2" axis_ref="none" /> 151 152 <field id="voce" description="ocean current along j-axis" unit="m/s" /> 152 <field id="voce_eff" description="Effective ocean current along j-axis" unit="m/s" />153 <field id="voce_eff" description="Effective ocean transport along j-axis" unit="m3/s" /> 153 154 <!-- voce_eiv: available with key_traldf_eiv and key_diaeiv --> 154 155 <field id="voce_eiv" description="EIV ocean current along j-axis" unit="m/s" /> 155 156 <!-- voce_eiv: available with key_trabbl_adv --> 156 157 <field id="voce_bbl" description="BBL ocean current along j-axis" unit="m/s" /> 158 <field id="ahv_bbl" description="BBL diffusive flux along j-axis" unit="m3/s" axis_ref="none" /> 157 159 <!-- variables available with key_diaar5 --> 158 160 <field id="v_masstr" description="ocean eulerian mass transport along j-axis" unit="kg/s" /> … … 166 168 <group id="grid_W" axis_ref="depthw" grid_ref="grid_W"> 167 169 <field id="woce" description="ocean vertical velocity" unit="m/s" /> 168 <field id="woce_eff" description="effective ocean vertical velocity" unit="m/s"/>170 <field id="woce_eff" description="effective ocean vertical transport" unit="m3/s" /> 169 171 <!-- woce_eiv: available with key_traldf_eiv and key_diaeiv --> 170 172 <field id="woce_eiv" description="EIV ocean vertical velocity" unit="m/s" /> 171 173 <!-- woce_eiv: available with key_trabbl_adv --> 172 <field id="woce_bbl" description="BBL ocean vertical velocity" unit="m/s" />173 174 <field id="avt" description="vertical eddy diffusivity" unit="m2/s" /> 174 175 <field id="avm" description="vertical eddy viscosity" unit="m2/s" /> … … 272 273 273 274 <group id="2d" output_freq="172800" output_level="10" enabled=".TRUE."> <!-- 2d files --> 274 275 <file id="2d_grid_T" name="auto" description="ocean T grid variables" >276 <field ref="sst" name="sosstsst" />277 <field ref="sss" name="sosaline" />278 <field ref="ssh" name="sossheig" />279 </file>280 281 <file id="2d_ptrc_T" name="auto" description="lobster sms variables" >282 <field ref="ZOO" />283 <field ref="PHY" />284 <field ref="NO3" />285 </file>286 287 288 275 </group> 289 276 … … 296 283 <field ref="sss" name="sosaline" /> 297 284 <field ref="ssh" name="sossheig" /> 298 <field ref="emp "name="sowaflup" />285 <field ref="emp-rnf" name="sowaflup" /> 299 286 <field ref="qsr" name="soshfldo" /> 300 <field ref="emps "name="sowaflcd" />287 <field ref="emps-rnf" name="sowaflcd" /> 301 288 <field ref="qns+qsr" name="sohefldo" /> 302 289 <field ref="mldr10_1" name="somxl010" /> -
trunk/NEMOGCM/CONFIG/GYRE_LOBSTER/EXP00/namelist_lobster
- Property svn:keywords set to Id
-
trunk/NEMOGCM/CONFIG/GYRE_LOBSTER/EXP00/namelist_top
- Property svn:keywords set to Id
r1578 r2528 1 1 !!>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> 2 !! NEMO/TOP1 : 1 - tracer definition (namtoptrc) 3 !! namelists 2 - dynamical tracer trends (namtoptrd) 4 !! 6 - tracer advection (namtopadv) 5 !! 7 - tracer bottom boundary (namtopbbl) 6 !! 8 - tracer lateral diffusion (namtopldf) 7 !! 3 - tracer vertical physics (namtopzdf) 8 !! 9 - tracer newtonian damping (namtopdmp) 2 !! NEMO/TOP1 : 1 - tracer definition (namtrc ) 3 !! namelists 2 - dynamical tracer trends (namtrc_trd) 4 !! 3 - tracer advection (namtrc_adv) 5 !! 4 - tracer lateral diffusion (namtrc_ldf) 6 !! 5 - tracer vertical physics (namtrc_zdf) 7 !! 6 - tracer newtonian damping (namtrc_dmp) 9 8 !>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> 10 9 !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' 11 &namt optrc ! tracers definition10 &namtrc ! tracers definition 12 11 !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 13 n dttrc = 1 ! time step frequency for passive tracers14 n writetrc = 360 ! time step frequency fortracer outputs15 ln_rsttr = .false. ! start from a restart file (T) or not (F)16 n rsttr = 0 ! restart control = 0 initial time step is not compared to the restart file value12 nn_dttrc = 1 ! time step frequency for passive sn_tracers 13 nn_writetrc = 360 ! time step frequency for sn_tracer outputs 14 ln_rsttr = .false. ! start from a restart file (T) or not (F) 15 nn_rsttr = 0 ! restart control = 0 initial time step is not compared to the restart file value 17 16 ! = 1 do not use the value in the restart file 18 17 ! = 2 calendar parameters read in the restart file 19 cn_trcrst_in = "restart_trc" ! suffix of pass. tracer restart name (input)20 cn_trcrst_out = "restart_trc" ! suffix of pass. tracer restart name (output)18 cn_trcrst_in = "restart_trc" ! suffix of pass. sn_tracer restart name (input) 19 cn_trcrst_out = "restart_trc" ! suffix of pass. sn_tracer restart name (output) 21 20 ! 22 21 ! ! name ! title of the field ! units ! initial data ! save ! 23 22 ! ! ! ! ! from file ! or not ! 24 23 ! ! ! ! ! or not ! ! 25 tracer(1) = 'DET' , 'Detritus ', 'mmole-N/m3' , .false. , .true.26 tracer(2) = 'ZOO' , 'Zooplankton concentration ', 'mmole-N/m3' , .false. , .true.27 tracer(3) = 'PHY' , 'Phytoplankton concentration', 'mmole-N/m3' , .false. , .true.28 tracer(4) = 'NO3' , 'Nitrate concentration ', 'mmole-N/m3' , .false. , .true.29 tracer(5) = 'NH4' , 'Ammonium concentration ', 'mmole-N/m3' , .false. , .true.30 tracer(6) = 'DOM' , 'Dissolved organic matter ', 'mmole-N/m3' , .false. , .true.24 sn_tracer(1) = 'DET' , 'Detritus ', 'mmole-N/m3' , .false. , .true. 25 sn_tracer(2) = 'ZOO' , 'Zooplankton concentration ', 'mmole-N/m3' , .false. , .true. 26 sn_tracer(3) = 'PHY' , 'Phytoplankton concentration', 'mmole-N/m3' , .false. , .true. 27 sn_tracer(4) = 'NO3' , 'Nitrate concentration ', 'mmole-N/m3' , .false. , .true. 28 sn_tracer(5) = 'NH4' , 'Ammonium concentration ', 'mmole-N/m3' , .false. , .true. 29 sn_tracer(6) = 'DOM' , 'Dissolved organic matter ', 'mmole-N/m3' , .false. , .true. 31 30 / 32 31 !----------------------------------------------------------------------- 33 &namt opadv ! advection scheme for passive tracer32 &namtrc_adv ! advection scheme for passive tracer 34 33 !----------------------------------------------------------------------- 35 ln_trcadv_cen2 = .false. ! 2nd order centered scheme 36 ln_trcadv_tvd = .true. ! TVD scheme37 ln_trcadv_muscl = .false. 34 ln_trcadv_cen2 = .false. ! 2nd order centered scheme 35 ln_trcadv_tvd = .true. ! TVD scheme 36 ln_trcadv_muscl = .false. ! MUSCL scheme 38 37 ln_trcadv_muscl2 = .false. ! MUSCL2 scheme + cen2 at boundaries 39 ln_trcadv_smolar = .false. ! SMOLAR scheme 40 rsc = 1. ! tuning coefficient for Smolar. scheme 41 ncortrc = 1 ! number of corrective phases for Smolar. scheme 42 crosster = .false. ! computes Smolar crossterms (T) or not (F) 38 ln_trcadv_ubs = .false. ! UBS scheme 39 ln_trcadv_qck = .false. ! QUICKEST scheme 43 40 / 44 41 !----------------------------------------------------------------------- 45 &namtopbbl ! bottom boundary layer scheme for passive tracer 46 !----------------------------------------------------------------------- 47 atrcbbl = 1000. ! lateral mixing coefficient in the bbl [m2/s] 48 / 49 !----------------------------------------------------------------------- 50 &namtopldf ! lateral diffusion scheme for passive tracer 42 &namtrc_ldf ! lateral diffusion scheme for passive tracer 51 43 !----------------------------------------------------------------------- 52 44 ln_trcldf_diff = .true. ! performs lateral diffusion (T) or not (F) … … 59 51 ln_trcldf_iso = .true. ! iso-neutral (require "key_ldfslp") 60 52 ! ! Coefficient 61 ahtrc0 = 300. ! horizontal eddy diffusivity for tracers [m2/s] 62 ahtrb0 = 0. ! background eddy diffusivity for ldf_iso [m2/s] 63 aeivtr0 = 1000. ! eddy induced velocity coefficient [m2/s] (require "key_trcldf_eiv") 64 trcrat = 1. ! ratio betweeen passive and active tracer diffusion coeff 53 rn_ahtrb_0 = 0. ! background eddy diffusivity for ldf_iso [m2/s] 65 54 / 66 55 !----------------------------------------------------------------------- 67 &namt opzdf ! vertical physics56 &namtrc_zdf ! vertical physics 68 57 !----------------------------------------------------------------------- 69 58 ln_trczdf_exp = .false. ! split explicit (T) or implicit (F) time stepping 70 n _trczdf_exp= 3 ! number of sub-timestep for ln_trczdfexp=T59 nn_trczdf_exp = 3 ! number of sub-timestep for ln_trczdfexp=T 71 60 / 72 61 !----------------------------------------------------------------------- 73 &namt oprad ! treatment of negative concentrations62 &namtrc_rad ! treatment of negative concentrations 74 63 !----------------------------------------------------------------------- 75 ln_trcrad = . true. ! artificially correct negative concentrations (T) or not (F)64 ln_trcrad = .false. ! artificially correct negative concentrations (T) or not (F) 76 65 / 77 66 !----------------------------------------------------------------------- 78 &namt opdmp ! passive tracer newtonian damping ('key_trcdmp')67 &namtrc_dmp ! passive tracer newtonian damping ('key_tradmp && key_trcdmp') 79 68 !----------------------------------------------------------------------- 80 ndmptr = 20 ! type of damping in passive tracers 81 ! ='latitude', damping poleward of 'ndmp' degrees and function 82 ! of the distance-to-coast. Red and Med Seas as ndmptr=-1 83 ! =-1 damping only in Med and Red Seas 84 ndmpftr = 0 ! create a damping.coeff NetCDF file (=1) or not (=0) 85 nmldmptr = 1 ! type of damping: =0 damping throughout the water column 86 ! =1 no damping in the mixed layer defined by avt >5cm2/s ) 87 ! =2 no damping in the mixed layer defined rho<rho(surf)+.01 ) 88 sdmptr = 50. ! surface time scale for internal damping (days) 89 bdmptr = 360. ! bottom time scale for internal damping (days) 90 hdmptr = 800. ! depth of transition between sdmptr and bdmptr (meters) 69 nn_hdmp_tr = -1 ! horizontal shape =-1, damping in Med and Red Seas only 70 ! =XX, damping poleward of XX degrees (XX>0) 71 ! + F(distance-to-coast) + Red and Med Seas 72 nn_zdmp_tr = 1 ! vertical shape =0 damping throughout the water column 73 ! =1 no damping in the mixing layer (kz criteria) 74 ! =2 no damping in the mixed layer (rho crieria) 75 rn_surf_tr = 50. ! surface time scale of damping [days] 76 rn_bot_tr = 360. ! bottom time scale of damping [days] 77 rn_dep_tr = 800. ! depth of transition between rn_surf and rn_bot [meters] 78 nn_file_tr = 0 ! create a damping.coeff NetCDF file (=1) or not (=0) 91 79 / 92 80 !----------------------------------------------------------------------- 93 &namt optrd ! diagnostics on tracer trends81 &namtrc_trd ! diagnostics on tracer trends ('key_trdtrc') 94 82 ! or mixed-layer trends ('key_trdmld_trc') 95 83 !---------------------------------------------------------------------- 96 n trd_trc = 360 ! time step frequency and tracers trends97 n ctls_trc = 0 ! control surface type in mixed-layer trends (0,1 or n<jpk)98 ucf_trc= 86400 ! unit conversion factor (=1 -> /seconds ; =86400. -> /day)84 nn_trd_trc = 360 ! time step frequency and tracers trends 85 nn_ctls_trc = 0 ! control surface type in mixed-layer trends (0,1 or n<jpk) 86 rn_ucf_trc = 86400 ! unit conversion factor (=1 -> /seconds ; =86400. -> /day) 99 87 ln_trdmld_trc_restart = .false. ! restart for ML diagnostics 100 88 ln_trdmld_trc_instant = .false. ! flag to diagnose trends of instantantaneous or mean ML T/S 101 l uttrd(1) = .true.102 l uttrd(2) = .true.103 l uttrd(3) = .true.104 l uttrd(4) = .true.105 l uttrd(5) = .true.106 l uttrd(6) = .true.89 ln_trdtrc(1) = .true. 90 ln_trdtrc(2) = .true. 91 ln_trdtrc(3) = .true. 92 ln_trdtrc(4) = .true. 93 ln_trdtrc(5) = .true. 94 ln_trdtrc(6) = .true. 107 95 / -
trunk/NEMOGCM/CONFIG/GYRE_LOBSTER/EXP00/xmlio_server.def
- Property svn:keywords set to Id
r1552 r2528 17 17 global_mpi_buffer_size = 512 18 18 / 19 20 !!====================================================================== 21 !! namnc4 netcdf4 chunking and compression settings 22 !!====================================================================== 23 !----------------------------------------------------------------------- 24 &namnc4 ! netcdf4 chunking and compression settings 25 ! (benign if "key_netcdf4" is not used) 26 !----------------------------------------------------------------------- 27 nn_nchunks_i = 4 ! number of chunks in i-dimension 28 nn_nchunks_j = 4 ! number of chunks in j-dimension 29 nn_nchunks_k = 31 ! number of chunks in k-dimension 30 ! setting nn_nchunks_k = jpk will give a chunk size of 1 in the vertical which 31 ! is optimal for postprocessing which works exclusively with horizontal slabs 32 ln_nc4zip = .TRUE. ! (T) use netcdf4 chunking and compression 33 ! (F) ignore chunking information and produce netcdf3-compatible files 34 / 19 35 20
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