Changeset 2545 for trunk/NEMOGCM/SETTE/fcm_job.sh

Timestamp:

2011-01-10T17:48:53+01:00 (13 years ago)

Author:

flavoni

Message:

improved READE and SETTE.pdf for SETTE, add small debug, see ticket #752

File:

• trunk/NEMOGCM/SETTE/fcm_job.sh (modified) (6 diffs)

trunk/NEMOGCM/SETTE/fcm_job.sh

@@ -1 @@
-#!/bin/bash
 ######################################################
 # Author : Simona Flavoni for NEMO
@@ -67 +66 @@
 #-
 #
+
+usage=" Usage : ./fcm_job.sh input_CONFIG_NAME.cfg  NUMBER_OF_PROCS"
+usage=" example : ./fcm_job.sh input_ORCA2_LIM_PISCES.cfg 8"
+
+
+minargcount=2
+        if [ ${#} -lt ${minargcount} ]
+        then
+                echo "not enought arguments for fcm_job.sh script"
+                echo "control number of argument of fcm_job.sh in sette.sh"
+                echo "${usage}"
+        exit 1
+        fi
+        unset minargcount
+   if [  -f ${SETTE_DIR}/output.sette ] ; then
+           echo "file output already present. Append comments"
+           echo "`ls ${SETTE_DIR}/output.sette`"
+   else
+           echo "file output not present"
+           touch ${SETTE_DIR}/output.sette
+           echo "`ls ${SETTE_DIR}/output.sette`"
+   fi
+   echo "executing script : fcm_job $@" >> ${SETTE_DIR}/output.sette
+   echo "            " >> ${SETTE_DIR}/output.sette
+
 # SET INPUT
 # get the input tarfile if needed
 tar_file=$(sed -ne "1,1p" $1)
 if [ "$(cat $1 | grep -c ".tar" )" -ne 0 ] ; then
+   echo "looking for tar file" >> ${SETTE_DIR}/output.sette
+   echo "            " >> ${SETTE_DIR}/output.sette
    cp ${FORCING_DIR}/${tar_file} ${INPUT_DIR}/.
    cd ${INPUT_DIR} ; tar xvf ${INPUT_DIR}/*.tar ; gunzip *gz
@@ -76 +102 @@
 
 if [ -f ${INPUT_DIR}/namelist_ice_lim2 ] ; then 
+   echo "choosing for namelist ice " >> ${SETTE_DIR}/output.sette
+   echo "            " >> ${SETTE_DIR}/output.sette
    cp ${INPUT_DIR}/namelist_ice_lim2 ${INPUT_DIR}/namelist_ice
 elif  [ -f ${INPUT_DIR}/namelist_ice_lim3 ] ; then 
@@ -84 +112 @@
 if [ "$(cat ${CONFIG_DIR}/${NEW_CONF}/cpp_${NEW_CONF}.fcm | grep -c "agrif" )" -ne 0 ] ; then
    #- Namelist for ocean and ice (agrif fine grid)
+      echo "choosing for namelist for AGRIF" >> ${SETTE_DIR}/output.sette
+      echo "            " >> ${SETTE_DIR}/output.sette
    cp ${INPUT_DIR}/1_namelist_ice_lim2 ${INPUT_DIR}/1_namelist_ice 
 fi
@@ -93 +123 @@
 NB_PROC=$2
  if [ ${NB_PROC} == 1 ] ; then
+ opa_command='./opa'  # !! to test if executable is created
+          type ${opa_command}
+          status_type=${?}
+          if [ ${status_type} -ne 0 ]
+          then
+              echo "opa not found"
+              exit 1
+          fi
+   echo "running opa" >> ${SETTE_DIR}/output.sette
+   echo "            " >> ${SETTE_DIR}/output.sette
    ./opa
 else
+opa_command='mpirun'  # !! to test if executable is created
+          type ${opa_command}
+          status_type=${?}
+          if [ ${status_type} -ne 0 ]
+          then
+              echo "mpi opa not found"
+              exit 1
+          fi
 # example for brodie (NEC SX8) machine
+   echo "running opa in MPI" >> ${SETTE_DIR}/output.sette
+   echo "            " >> ${SETTE_DIR}/output.sette
    mpirun -np ${NB_PROC} opa
 # example for dedale machine
@@ -108 +158 @@
 
 #- Save ocean output files
+echo "saving ocean & ice output, debug & restarts files" >> ${SETTE_DIR}/output.sette
+echo "            " >> ${SETTE_DIR}/output.sette
 [ ! -d ${OUTPUT_DIR} ] && mkdir ${OUTPUT_DIR}
 [ -f *ocean.output ] && mv *ocean.output ${OUTPUT_DIR}/.