Changeset 3586 for branches/2012/dev_MERCATOR_2012_rev3555/NEMOGCM/SETTE/prepare_job.sh

Timestamp:

2012-11-16T18:42:50+01:00 (11 years ago)

Author:

cbricaud

Message:

add modification from dev_r3342_MERCATOR7_SST in dev_MERCATOR_2012_rev3555

File:

• branches/2012/dev_MERCATOR_2012_rev3555/NEMOGCM/SETTE/prepare_job.sh (modified) (10 diffs)

branches/2012/dev_MERCATOR_2012_rev3555/NEMOGCM/SETTE/prepare_job.sh

@@ -11 +11 @@
 # prepare_job.sh   : creates the job script for running job 
 ######################################################
-#set -vx
+#set -x
 set -o posix
 #set -u
 #set -e
-#+
+#
 #
 # ================
@@ -30 +30 @@
 # ::
 #
-#  $ ./prepare_job.sh INPUT_FILE_CONFIG_NAME NUMBER_PROC TEST_NAME MPI_FLAG JOB_FILE
+#  $ ./prepare_job.sh INPUT_FILE_CONFIG_NAME NUMBER_PROC TEST_NAME MPI_INTERACT MPI_FLAG
 #
 #
@@ -36 +36 @@
 # ===========
 #
-# Part of the SETTE package to run tests for NEMO
+# Simple job for SET TESTS for NEMO (SETTE)
 # 
-# prepare the script $JOB_FILE to run the tests 
+#   get input files (if needed) : tar file  
+#  (note this job needs to have an input_CONFIG.cfg in which can be found input tar file name)
+#
+#   runs job in interactive or batch mode : all jobs using 1 process are run interactive, and all MPP jobs are
+#
+#   run in batch (MPI_INTERACT="no") or interactive (MPI_INTERACT="yes") see sette.sh and BATCH_TEMPLATE directory
+#
+#   and call post_test_tidyup function (that moves in NEMO_VALIDATION_DIR solver.stat, tracer.stat (for LOBSTER & PISCES) & ocean.output)
 #
 # EXAMPLES
@@ -45 +52 @@
 # ::
 #
-#  $ ./prepare_job.sh INPUT_FILE_CONFIG_NAME NUMBER_PROC TEST_NAME MPI_FLAG $JOB_FILE
-#
-# prepare the $JOB_FILE for execution 
+#  $ ./fcm_job.sh INPUT_FILE_CONFIG_NAME NUMBER_PROC TEST_NAME MPI_INTERACT MPI_FLAG
+#
+#  run a job of config GYRE with 1 processor SHORT test ( 5 days ) using an interactive run without mpirun
+#  $ ./fcm_job.sh input_GYRE.cfg 1 SHORT yes no
+#
+#  run a job of config ORCA2_LIM_PISCES   with 8 processors test RESTARTABILITY submitting the job to the batch queue system and using mpirun
+#  $ ./fcm_job.sh input_ORCA2_LIM_PISCES.cfg 8 LONG no yes
 #
 #
@@ -59 +70 @@
 # ==========
 #
-# $Id: prepare_job.sh 3050 2011-11-07 14:11:34Z acc $
+# $Id: fcm_job.sh 3050 2011-11-07 14:11:34Z acc $
 #
 #
@@ -68 +79 @@
 #
 
-usage=" Usage : ./prepare_job.sh INPUT_FILE_CONFIG_NAME NUMBER_PROC TEST_NAME MPI_FLAG JOB_FILE"
-usage=" example : ./prepare_job.sh input_ORCA2_LIM_PISCES.cfg 8 SHORT no/yes $JOB_FILE"
+usage=" Usage : ./fcm_job.sh input_CONFIG_NAME.cfg  NUMBER_OF_PROCS TEST_NAME INTERACT MPI_FLAG"
+usage=" example : ./fcm_job.sh input_ORCA2_LIM_PISCES.cfg 8 SHORT no/yes no/yes"
 
 
@@ -75 +86 @@
         if [ ${#} -lt ${minargcount} ]
         then
-                echo "not enough arguments for prepare_job.sh script"
-                echo "control number of argument of prepare_job.sh in sette.sh"
+                echo "not enought arguments for fcm_job.sh script"
+                echo "control number of argument of fcm_job.sh in sette.sh"
                 echo "${usage}"
         exit 1
@@ -159 +170 @@
     exit 1
 fi
-
+#if [ ${NB_PROC} == 1 ] ; then
+#    echo "running opa" >> ${SETTE_DIR}/output.sette
+#    echo "            " >> ${SETTE_DIR}/output.sette
+#    ./opa
+#
+# Tidy out output from this test and populate the NEMO_VALIDATION_DIR tree
+#
+#    post_test_tidyup
+#else
+#    echo "running opa in MPI" >> ${SETTE_DIR}/output.sette
+#    echo "            " >> ${SETTE_DIR}/output.sette
+
+#    if [ ${MPI_INTERACT} == "yes" ] ; then
+#  #
+#  # example for brodie (NEC SX8) machine
+#  #  mpirun -np ${NB_PROC} opa
+#  # example for dedale machine
+#  #  mpirun --mca btl self,tcp -np ${NB_PROC} opa
+#  # example for vargas (IBM Power6) machine
+#  mpiexec -n ${NB_PROC} opa
+#  #
+#  post_test_tidyup
+#    fi
+#
 # example for NOCS Altix system using PBS batch submission (requires ${SETTE_DIR}/sette_batch_template file)
 #
-  #  if [ ${MPI_FLAG} == "no" ] ; then
+  #  if [ ${MPI_INTERACT} == "no" ] ; then
       case ${COMPILER} in 
          ALTIX_NAUTILUS_MPT)
@@ -214 +248 @@
              -e"s/NPROCS/${NB_PROC}/" \
              -e"s/QUEUE/${QUEUE}/" -e"s/MEM/${mem}/" \
+             -e"s/QUEUE/${QUEUE}/" -e"s/MEM/${mem}/" \
              -e"s:DEF_SETTE_DIR:${SETTE_DIR}:" -e"s:DEF_INPUT_DIR:${INPUT_DIR}:" \
              -e"s:DEF_EXE_DIR:${EXE_DIR}:" \
@@ -237 +272 @@
    fi
    
-   chmod a+x $JOB_FILE ; echo "$JOB_FILE is ready"
+   chmod a+x $JOB_FILE
 
 #fi