Index: branches/2013/dev_r3853_CNRS9_ConfSetting/NEMOGCM/CONFIG/ORCA2_LIM_PISCES/EXP00/namelist
===================================================================
--- branches/2013/dev_r3853_CNRS9_ConfSetting/NEMOGCM/CONFIG/ORCA2_LIM_PISCES/EXP00/namelist	(revision 3854)
+++ 	(revision )
@@ -1,1 +1,0 @@
-link ../../ORCA2_LIM/EXP00/namelist
Index: branches/2013/dev_r3853_CNRS9_ConfSetting/NEMOGCM/CONFIG/ORCA2_LIM_PISCES/EXP00/namelist_cfg
===================================================================
--- branches/2013/dev_r3853_CNRS9_ConfSetting/NEMOGCM/CONFIG/ORCA2_LIM_PISCES/EXP00/namelist_cfg	(revision 3875)
+++ branches/2013/dev_r3853_CNRS9_ConfSetting/NEMOGCM/CONFIG/ORCA2_LIM_PISCES/EXP00/namelist_cfg	(revision 3875)
@@ -0,0 +1,246 @@
+!!>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
+!! NEMO/OPA  Configuration namelist : used to overwrite defaults values defined in SHARED/namelist_ref
+!!>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
+!!======================================================================
+!!   namrun        parameters of the run
+!!======================================================================
+!
+!-----------------------------------------------------------------------
+&namrun        !   parameters of the run
+!-----------------------------------------------------------------------
+   nn_itend    =    100   !  last  time step (std 5475)
+   nn_write    =    10     !  frequency of write in the output file   (modulo referenced to nn_it000)
+/
+!-----------------------------------------------------------------------
+&namzgr        !   vertical coordinate
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&namzgr_sco    !   s-coordinate or hybrid z-s-coordinate
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&namdom        !   space and time domain (bathymetry, mesh, timestep)
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&namtsd    !   data : Temperature  & Salinity
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&namsbc        !   Surface Boundary Condition (surface module)
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&namsbc_ana    !   analytical surface boundary condition
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&namsbc_flx    !   surface boundary condition : flux formulation
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&namsbc_clio   !   namsbc_clio  CLIO bulk formulae
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&namsbc_core   !   namsbc_core  CORE bulk formulae
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&namsbc_mfs   !   namsbc_mfs  MFS bulk formulae
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&namsbc_cpl    !   coupled ocean/atmosphere model                       ("key_coupled")
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&namtra_qsr    !   penetrative solar radiation
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&namsbc_rnf    !   runoffs namelist surface boundary condition
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&namsbc_apr    !   Atmospheric pressure used as ocean forcing or in bulk
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&namsbc_ssr    !   surface boundary condition : sea surface restoring
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&namsbc_alb    !   albedo parameters
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&namberg       !   iceberg parameters
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&namlbc        !   lateral momentum boundary condition
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&namcla        !   cross land advection
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&namobc        !   open boundaries parameters                           ("key_obc")
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&namagrif      !  AGRIF zoom                                            ("key_agrif")
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&nam_tide      !   tide parameters (#ifdef key_tide)
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&nambdy        !  unstructured open boundaries                          ("key_bdy")
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&nambdy_dta      !  open boundaries - external data           ("key_bdy")
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&nambdy_tide     ! tidal forcing at open boundaries
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&nambfr        !   bottom friction
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&nambbc        !   bottom temperature boundary condition
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&nambbl        !   bottom boundary layer scheme
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&nameos        !   ocean physical parameters
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&namtra_adv    !   advection scheme for tracer
+!-----------------------------------------------------------------------
+/
+!----------------------------------------------------------------------------------
+&namtra_ldf    !   lateral diffusion scheme for tracers
+!----------------------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&namtra_dmp    !   tracer: T & S newtonian damping
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&namdyn_adv    !   formulation of the momentum advection
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&namdyn_vor    !   option of physics/algorithm (not control by CPP keys)
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&namdyn_hpg    !   Hydrostatic pressure gradient option
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+!namdyn_spg    !   surface pressure gradient   (CPP key only)
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&namdyn_ldf    !   lateral diffusion on momentum
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&namzdf        !   vertical physics
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&namzdf_ric    !   richardson number dependent vertical diffusion       ("key_zdfric" )
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&namzdf_tke    !   turbulent eddy kinetic dependent vertical diffusion  ("key_zdftke")
+!-----------------------------------------------------------------------
+/
+!------------------------------------------------------------------------
+&namzdf_kpp    !   K-Profile Parameterization dependent vertical mixing  ("key_zdfkpp", and optionally:
+!------------------------------------------------------------------------ "key_kppcustom" or "key_kpplktb")
+/
+!-----------------------------------------------------------------------
+&namzdf_gls                !   GLS vertical diffusion                   ("key_zdfgls")
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&namzdf_ddm    !   double diffusive mixing parameterization             ("key_zdfddm")
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&namzdf_tmx    !   tidal mixing parameterization                        ("key_zdftmx")
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&namsol        !   elliptic solver / island / free surface
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&nammpp        !   Massively Parallel Processing                        ("key_mpp_mpi)
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&namctl        !   Control prints & Benchmark
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&namnc4        !   netcdf4 chunking and compression settings            ("key_netcdf4")
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&namtrd        !   diagnostics on dynamics and/or tracer trends         ("key_trddyn" and/or "key_trdtra")
+!              !       or mixed-layer trends or barotropic vorticity    ("key_trdmld" or     "key_trdvor")
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&namflo       !   float parameters                                      ("key_float")
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&namptr       !   Poleward Transport Diagnostic
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&namhsb       !  Heat and salt budgets
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&nam_diaharm   !   Harmonic analysis of tidal constituents ('key_diaharm')
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&namdct        ! transports through sections
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&namobs       !  observation usage switch                               ('key_diaobs')
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&nam_asminc   !   assimilation increments                               ('key_asminc')
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&namsbc_wave   ! External fields from wave model
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&namdyn_nept  !   Neptune effect (simplified: lateral and vertical diffusions removed)
+!-----------------------------------------------------------------------
+/
Index: branches/2013/dev_r3853_CNRS9_ConfSetting/NEMOGCM/CONFIG/ORCA2_LIM_PISCES/EXP00/namelist_ice
===================================================================
--- branches/2013/dev_r3853_CNRS9_ConfSetting/NEMOGCM/CONFIG/ORCA2_LIM_PISCES/EXP00/namelist_ice	(revision 3854)
+++ 	(revision )
@@ -1,1 +1,0 @@
-link ../../ORCA2_LIM/EXP00/namelist_ice_lim2
Index: branches/2013/dev_r3853_CNRS9_ConfSetting/NEMOGCM/CONFIG/ORCA2_LIM_PISCES/EXP00/namelist_ice_cfg
===================================================================
--- branches/2013/dev_r3853_CNRS9_ConfSetting/NEMOGCM/CONFIG/ORCA2_LIM_PISCES/EXP00/namelist_ice_cfg	(revision 3875)
+++ branches/2013/dev_r3853_CNRS9_ConfSetting/NEMOGCM/CONFIG/ORCA2_LIM_PISCES/EXP00/namelist_ice_cfg	(revision 3875)
@@ -0,0 +1,37 @@
+!!>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
+!! NEMO/LIM-2 : Ice configuration namelist. Overwrites SHARED/namelist_ice_lim2_ref
+!>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
+
+!-----------------------------------------------------------------------
+&namicerun     !   Share parameters for dynamics/advection/thermo
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&namiceini     !   ice initialisation
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&namicedyn     !   ice dynamic
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&namicetrp     !   ice transport
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&namicethd     !   ice thermodynamic
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&namice_dmp    !   damping of sea ice alone open boundaries
+!              !   (hard coded damping area: check if it fit your config)
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&namicedia     !   ice diagnostics
+!-----------------------------------------------------------------------
+/
+!'''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''
+&namiceout     !   parameters for outputs
+!,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
+/      
Index: branches/2013/dev_r3853_CNRS9_ConfSetting/NEMOGCM/CONFIG/ORCA2_LIM_PISCES/EXP00/namelist_ice_lim2
===================================================================
--- branches/2013/dev_r3853_CNRS9_ConfSetting/NEMOGCM/CONFIG/ORCA2_LIM_PISCES/EXP00/namelist_ice_lim2	(revision 3854)
+++ 	(revision )
@@ -1,1 +1,0 @@
-link ../../ORCA2_LIM/EXP00/namelist_ice_lim2
Index: branches/2013/dev_r3853_CNRS9_ConfSetting/NEMOGCM/CONFIG/ORCA2_LIM_PISCES/EXP00/namelist_ice_lim3
===================================================================
--- branches/2013/dev_r3853_CNRS9_ConfSetting/NEMOGCM/CONFIG/ORCA2_LIM_PISCES/EXP00/namelist_ice_lim3	(revision 3854)
+++ 	(revision )
@@ -1,1 +1,0 @@
-link ../../ORCA2_LIM/EXP00/namelist_ice_lim3
Index: branches/2013/dev_r3853_CNRS9_ConfSetting/NEMOGCM/CONFIG/ORCA2_LIM_PISCES/EXP00/namelist_ice_ref
===================================================================
--- branches/2013/dev_r3853_CNRS9_ConfSetting/NEMOGCM/CONFIG/ORCA2_LIM_PISCES/EXP00/namelist_ice_ref	(revision 3875)
+++ branches/2013/dev_r3853_CNRS9_ConfSetting/NEMOGCM/CONFIG/ORCA2_LIM_PISCES/EXP00/namelist_ice_ref	(revision 3875)
@@ -0,0 +1,1 @@
+link ../../SHARED/namelist_ice_lim2_ref
Index: branches/2013/dev_r3853_CNRS9_ConfSetting/NEMOGCM/CONFIG/ORCA2_LIM_PISCES/EXP00/namelist_pisces
===================================================================
--- branches/2013/dev_r3853_CNRS9_ConfSetting/NEMOGCM/CONFIG/ORCA2_LIM_PISCES/EXP00/namelist_pisces	(revision 3854)
+++ 	(revision )
@@ -1,264 +1,0 @@
-!!>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
-!! PISCES  :    1  - air-sea exchange                         (nampisext)
-!! namelists    2  - biological parameters                    (nampisbio)
-!!              3  - parameters for nutrient limitations      (nampislim)    
-!!              4  - parameters for phytoplankton             (nampisprod,nampismort)
-!!              5  - parameters for zooplankton               (nampismes,nampiszoo)
-!!              6  - parameters for remineralization          (nampisrem)
-!!              7  - parameters for calcite chemistry         (nampiscal)
-!!              8  - parameters for inputs deposition         (nampissed)
-!!              9  - parameters for Kriest parameterization   (nampiskrp, nampiskrs)
-!!              10 - additional 2D/3D  diagnostics            (nampisdia)
-!!              11 - Damping                                  (nampisdmp)
-!>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
-!'''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''
-&nampisext     !   air-sea exchange
-!,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
-   ln_co2int  =  .false. ! read atm pco2 from a file (T) or constant (F)
-   atcco2     =  280.    ! Constant value atmospheric pCO2 - ln_co2int = F
-   clname     =  'atcco2.txt'  ! Name of atm pCO2 file - ln_co2int = T
-   nn_offset  =  0       ! Offset model-data start year - ln_co2int = T
-!                        ! If your model year is iyy, nn_offset=(years(1)-iyy) 
-!                        ! then the first atmospheric CO2 record read is at years(1)
-/
-!'''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''
-&nampisatm     !  Atmospheric prrssure 
-!,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
-!              !  file name   ! frequency (hours) ! variable   ! time interp. !  clim  ! 'yearly'/ ! weights  ! rotation !
-!              !              !  (if <0  months)  !   name     !   (logical)  !  (T/F) ! 'monthly' ! filename ! pairing  !
-   sn_patm     = 'presatm'    ,     -1            , 'patm'     ,  .true.      , .true. ,   'yearly'  , ''       , ''
-   cn_dir      = './'     !  root directory for the location of the dynamical files
-!
-   ln_presatm  = .true.   ! constant atmopsheric pressure (F) or from a file (T)
-/
-!'''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''
-&nampisbio     !   biological parameters
-!,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
-   nrdttrc    =  1        ! time step frequency for biology
-   wsbio      =  2.       ! POC sinking speed
-   xkmort     =  2.E-7    ! half saturation constant for mortality
-   ferat3     =  10.E-6   ! Fe/C in zooplankton 
-   wsbio2     =  30.      ! Big particles sinking speed
-   niter1max  =  1        ! Maximum number of iterations for POC
-   niter2max  =  1        ! Maximum number of iterations for GOC
-/
-!'''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''
-&nampislim     !   parameters for nutrient limitations
-!,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
-   concnno3   =  1.e-6    ! Nitrate half saturation of nanophytoplankton
-   concdno3   =  3.E-6   ! Phosphate half saturation for diatoms
-   concnnh4   =  1.E-7    ! NH4 half saturation for phyto
-   concdnh4   =  3.E-7   ! NH4 half saturation for diatoms
-   concnfer   =  1.E-9     ! Iron half saturation for phyto
-   concdfer   =  3.E-9   ! Iron half saturation for diatoms
-   concbfe    =  1.E-11   ! Half-saturation for Fe limitation of Bacteria
-   concbnh4   =  2.5E-8   ! NH4 half saturation for phyto
-   concbno3   =  2.5E-7   ! Phosphate half saturation for diatoms
-   xsizedia   =  1.E-6    ! Minimum size criteria for diatoms
-   xsizephy   =  1.E-6    ! Minimum size criteria for phyto
-   xsizern    =  3.0      ! Size ratio for nanophytoplankton
-   xsizerd    =  3.0      ! Size ratio for diatoms
-   xksi1      =  2.E-6    ! half saturation constant for Si uptake
-   xksi2      =  20E-6  ! half saturation constant for Si/C
-   xkdoc      =  417.E-6  ! half-saturation constant of DOC remineralization
-   qnfelim    =  7.E-6    ! Optimal quota of phyto
-   qdfelim    =  7.E-6    ! Optimal quota of diatoms
-   caco3r     =  0.3      ! mean rain ratio
-/
-!'''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''
-&nampisopt     !   parameters for optics
-!,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
-!              !  file name        ! frequency (hours) ! variable   ! time interp. !  clim  ! 'yearly'/ ! weights  ! rotation !
-!              !                   !  (if <0  months)  !   name     !   (logical)  !  (T/F) ! 'monthly' ! filename ! pairing  !
-   sn_par     = 'par.orca'       ,     24            , 'fr_par'     ,  .true.      , .true. ,   'yearly'  , ''       , ''
-   cn_dir      = './'      !  root directory for the location of the dynamical files
-   ln_varpar   =  .true.   ! boolean for PAR variable
-   parlux      =  0.43      ! Fraction of shortwave as PAR
-/ 
-!'''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''
-&nampisprod     !   parameters for phytoplankton growth
-!,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
-   pislope    =  2.       ! P-I slope
-   pislope2   =  2.       ! P-I slope  for diatoms
-   excret     =  0.05     ! excretion ratio of phytoplankton
-   excret2    =  0.05     ! excretion ratio of diatoms
-   ln_newprod =  .true.   ! Enable new parame. of production (T/F) 
-   bresp      =  0.00333  ! Basal respiration rate
-   chlcnm     =  0.033    ! Minimum Chl/C in nanophytoplankton
-   chlcdm     =  0.05     ! Minimum Chl/C in diatoms
-   chlcmin    =  0.004    ! Maximum Chl/c in phytoplankton
-   fecnm      =  40E-6    ! Maximum Fe/C in nanophytoplankton
-   fecdm      =  40E-6    ! Minimum Fe/C in diatoms
-   grosip     =  0.159    ! mean Si/C ratio
-/
-!'''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''
-&nampismort     !   parameters for phytoplankton sinks
-!,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
-   wchl       =  0.01    ! quadratic mortality of phytoplankton
-   wchld      =  0.01     ! maximum quadratic mortality of diatoms
-   wchldm     =  0.03     ! maximum quadratic mortality of diatoms
-   mprat      =  0.01     ! phytoplankton mortality rate
-   mprat2     =  0.01     ! Diatoms mortality rate
-/
-!'''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''
-&nampismes     !   parameters for mesozooplankton
-!,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
-   part2      =  0.75     ! part of calcite not dissolved in mesozoo guts
-   grazrat2   =  0.75     ! maximal mesozoo grazing rate
-   resrat2    =  0.005    ! exsudation rate of mesozooplankton
-   mzrat2     =  0.03     ! mesozooplankton mortality rate
-   xprefc     =  1.       ! zoo preference for phyto
-   xprefp     =  0.3      ! zoo preference for POC
-   xprefz     =  1.       ! zoo preference for zoo
-   xprefpoc   =  0.3      ! zoo preference for poc
-   xthresh2zoo = 1E-8     ! zoo feeding threshold for mesozooplankton 
-   xthresh2dia = 1E-8     ! diatoms feeding threshold for mesozooplankton 
-   xthresh2phy = 1E-8     ! nanophyto feeding threshold for mesozooplankton 
-   xthresh2poc = 1E-8     ! poc feeding threshold for mesozooplankton 
-   xthresh2   =  3E-7     ! Food threshold for grazing
-   xkgraz2    =  20.E-6   ! half sturation constant for meso grazing
-   epsher2    =  0.3      ! Efficicency of Mesozoo growth
-   sigma2     =  0.6      ! Fraction of mesozoo excretion as DOM
-   unass2     =  0.3      ! non assimilated fraction of P by mesozoo
-   grazflux   =  2.e3     ! flux-feeding rate
-/
-!'''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''
-&nampiszoo     !   parameters for microzooplankton
-!,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
-   part       =  0.5      ! part of calcite not dissolved in microzoo gutsa
-   grazrat    =  3.0      ! maximal zoo grazing rate
-   resrat     =  0.03     ! exsudation rate of zooplankton
-   mzrat      =  0.004    ! zooplankton mortality rate
-   xpref2c    =  0.1      ! Microzoo preference for POM
-   xpref2p    =  1.       ! Microzoo preference for Nanophyto
-   xpref2d    =  0.5      ! Microzoo preference for Diatoms
-   xthreshdia =  1.E-8    ! Diatoms feeding threshold for microzooplankton 
-   xthreshphy =  1.E-8    ! Nanophyto feeding threshold for microzooplankton 
-   xthreshpoc =  1.E-8    ! POC feeding threshold for microzooplankton 
-   xthresh    =  3.E-7    ! Food threshold for feeding
-   xkgraz     =  20.E-6   ! half sturation constant for grazing
-   epsher     =  0.3      ! Efficiency of microzoo growth
-   sigma1     =  0.6      ! Fraction of microzoo excretion as DOM
-   unass      =  0.3      ! non assimilated fraction of phyto by zoo
-/
-!'''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''
-&nampisfer     !   parameters for iron chemistry
-!,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
-   ln_fechem =  .false.   ! complex iron chemistry ( T/F )
-   ln_ligvar =  .true.   ! variable ligand concentration
-   xlam1     =  0.005     ! scavenging rate of Iron
-   xlamdust  =  150.0     ! Scavenging rate of dust
-   ligand    =  0.6E-9    ! Ligands concentration 
-/  
-!'''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''
-&nampisrem     !   parameters for remineralization
-!,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
-   xremik    =  0.35      ! remineralization rate of DOC
-   xremip    =  0.025     ! remineralisation rate of POC
-   nitrif    =  0.05      ! NH4 nitrification rate
-   xsirem    =  0.003     ! remineralization rate of Si
-   xsiremlab =  0.03      ! fast remineralization rate of Si
-   xsilab    =  0.5       ! Fraction of labile biogenic silica
-   oxymin    =  1.E-6     ! Half-saturation constant for anoxia
-/
-!'''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''
-&nampiscal     !   parameters for Calcite chemistry
-!,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
-   kdca       =  6.       ! calcite dissolution rate constant (1/time)
-   nca        =  1.       ! order of dissolution reaction (dimensionless)
-/
-!'''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''
-&nampissbc     !   parameters for inputs deposition
-!,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
-!              !  file name        ! frequency (hours) ! variable   ! time interp. !  clim  ! 'yearly'/ ! weights  ! rotation !
-!              !                   !  (if <0  months)  !   name     !   (logical)  !  (T/F) ! 'monthly' ! filename ! pairing  !
-   sn_dust     = 'dust.orca'       ,     -1            , 'dust'     ,  .true.      , .true. ,   'yearly'  , ''       , ''
-   sn_solub    = 'solubility.orca' ,    -12            , 'solubility1' ,  .false.      , .true. ,   'yearly'  , ''       , ''
-   sn_riverdic = 'river.orca'      ,    120            , 'riverdic' ,  .true.     , .true. ,   'yearly'  , ''       , ''
-   sn_riverdoc = 'river.orca'      ,    120            , 'riverdoc' ,  .true.     , .true. ,   'yearly'  , ''       , ''
-   sn_riverdin = 'river.orca'      ,    120            , 'riverdin' ,  .true.     , .true. ,   'yearly'  , ''       , ''
-   sn_riverdon = 'river.orca'      ,    120            , 'riverdon' ,  .true.     , .true. ,   'yearly'  , ''       , ''
-   sn_riverdip = 'river.orca'      ,    120            , 'riverdip' ,  .true.     , .true. ,   'yearly'  , ''       , ''
-   sn_riverdop = 'river.orca'      ,    120            , 'riverdop' ,  .true.     , .true. ,   'yearly'  , ''       , ''
-   sn_riverdsi = 'river.orca'      ,    120            , 'riverdsi' ,  .true.     , .true. ,   'yearly'  , ''       , ''
-   sn_ndepo    = 'ndeposition.orca',    -12            , 'ndep'     ,  .false.     , .true. ,   'yearly'  , ''       , ''
-   sn_ironsed  = 'bathy.orca'      ,    -12            , 'bathy'    ,  .false.     , .true. ,   'yearly'  , ''       , ''
-   sn_hydrofe  = 'hydrofe'         ,    -12            , 'epsdb'    ,  .false.     , .true. ,   'yearly'  , ''       , ''
-!
-   cn_dir      = './'      !  root directory for the location of the dynamical files
-   ln_dust     =  .true.   ! boolean for dust input from the atmosphere
-   ln_solub    =  .true.   ! boolean for variable solubility of atm. Iron
-   ln_river    =  .true.   ! boolean for river input of nutrients
-   ln_ndepo    =  .true.   ! boolean for atmospheric deposition of N
-   ln_ironsed  =  .true.   ! boolean for Fe input from sediments
-   ln_ironice  =  .true.   ! boolean for Fe input from sea ice
-   ln_hydrofe  =  .false.  ! boolean for from hydrothermal vents
-   sedfeinput  =  1.e-9    ! Coastal release of Iron
-   dustsolub   =  0.02     ! Solubility of the dust
-   wdust       =  2.0      ! Dust sinking speed 
-   icefeinput  =  15.e-9   ! Iron concentration in sea ice
-   nitrfix     =  1.e-7    ! Nitrogen fixation rate
-   diazolight  =  50.      ! Diazotrophs sensitivity to light (W/m2)
-   concfediaz  =  1.e-10   ! Diazotrophs half-saturation Cste for Iron
-   hratio      =  9.e+5    ! Fe to 3He ratio assumed for vent iron supply 
-/
-!'''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''
-&nampiskrp     !   Kriest parameterization : parameters     "key_kriest"
-!,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
-   xkr_eta      = 1.17    ! Sinking  exponent
-   xkr_zeta     = 2.28    ! N content exponent
-   xkr_ncontent = 5.7E-6  ! N content factor
-   xkr_mass_min = 0.0002  ! Minimum mass for Aggregates
-   xkr_mass_max = 1.      ! Maximum mass for Aggregates
-/
-!'''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''
-&nampiskrs     !   Kriest parameterization : size classes  "key_kriest"
-!,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
-   xkr_sfact    = 942.    ! Sinking factor
-   xkr_stick    = 0.5     ! Stickiness
-   xkr_nnano    = 2.337   ! Nbr of cell in nano size class
-   xkr_ndiat    = 3.718   ! Nbr of cell in diatoms size class
-   xkr_nmeso    = 7.147   ! Nbr of cell in mesozoo size class
-   xkr_naggr    = 9.877   ! Nbr of cell in aggregates  size class
-/
-!'''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''
-&nampisdia     !   additional 2D/3D tracers diagnostics 
-!,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
-!              !    name   !           title of the field          !     units      !
-!              !           !                                       !                !  
-   pisdia2d(1)  = 'Cflx     ' , 'DIC flux                          ',  'molC/m2/s    '
-   pisdia2d(2)  = 'Oflx     ' , 'Oxygen flux                       ',  'molC/m2/s    '
-   pisdia2d(3)  = 'Kg       ' , 'Gas transfer                      ',  'mol/m2/s/uatm'
-   pisdia2d(4)  = 'Delc     ' , 'Delta CO2                         ',  'uatm         '
-   pisdia2d(5)  = 'PMO      ' , 'POC export                        ',  'molC/m2/s    '
-   pisdia2d(6)  = 'PMO2     ' , 'GOC export                        ',  'molC/m2/s    '
-   pisdia2d(7)  = 'ExpFe1   ' , 'Nano iron export                  ',  'molFe/m2/s   '
-   pisdia2d(8)  = 'ExpFe2   ' , 'Diatoms iron export               ',  'molFe/m2/s   '
-   pisdia2d(9)  = 'ExpSi    ' , 'Silicate export                   ',  'molSi/m2/s   '
-   pisdia2d(10) = 'ExpCaCO3 ' , 'Calcite export                    ',  'molC/m2/s    '
-   pisdia2d(11) = 'heup     ' , 'euphotic layer depth              ',  'm            '
-   pisdia2d(12) = 'Fedep    ' , 'Iron dep                          ',  'molFe/m2/s   '
-   pisdia2d(13) = 'Nfix     ' , 'Nitrogen Fixation                 ',  'molN/m2/s    '
-   pisdia3d(1)  = 'PH       ' , 'PH                                ',  '-            '
-   pisdia3d(2)  = 'CO3      ' , 'Bicarbonates                      ',  'mol/l        '
-   pisdia3d(3)  = 'CO3sat   ' , 'CO3 saturation                    ',  'mol/l        '
-   pisdia3d(4)  = 'PAR      ' , 'light penetration                 ',  'W/m2         '
-   pisdia3d(5)  = 'PPPHY    ' , 'Primary production of nanophyto   ',  'molC/m3/s    '
-   pisdia3d(6)  = 'PPPHY2   ' , 'Primary production of diatoms     ',  'molC/m3/s    '
-   pisdia3d(7)  = 'PPNEWN   ' , 'New Primary production of nano    ',  'molC/m3/s    '
-   pisdia3d(8)  = 'PPNEWD   ' , 'New Primary production of diat    ',  'molC/m3/s    '
-   pisdia3d(9)  = 'PBSi     ' , 'Primary production of Si diatoms  ',  'molSi/m3/s   '
-   pisdia3d(10) = 'PFeN     ' , 'Primary production of nano iron   ',  'molFe/m3/s   '
-   pisdia3d(11) = 'PFeD     ' , 'Primary production of diatoms iron',  'molFe/m3/s   '
-/
-!'''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''
-&nampisdmp     !  Damping 
-!,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
-   ln_pisdmp    =  .true.     !  Relaxation fo some tracers to a mean value
-   nn_pisdmp    =  5475       !  Frequency of Relaxation 
-/
-!'''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''
-&nampismass     !  Mass conservation
-!,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
-   ln_check_mass =  .false.    !  Check mass conservation
-/
Index: branches/2013/dev_r3853_CNRS9_ConfSetting/NEMOGCM/CONFIG/ORCA2_LIM_PISCES/EXP00/namelist_pisces_cfg
===================================================================
--- branches/2013/dev_r3853_CNRS9_ConfSetting/NEMOGCM/CONFIG/ORCA2_LIM_PISCES/EXP00/namelist_pisces_cfg	(revision 3875)
+++ branches/2013/dev_r3853_CNRS9_ConfSetting/NEMOGCM/CONFIG/ORCA2_LIM_PISCES/EXP00/namelist_pisces_cfg	(revision 3875)
@@ -0,0 +1,75 @@
+!!>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
+!! PISCES  :   Configuration namelist : used to overwrite defaults values defined in SHARED/namelist_pis_ref
+!>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
+!'''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''
+&nampisext     !   air-sea exchange
+!,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
+/
+!'''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''
+&nampisatm     !  Atmospheric prrssure 
+!,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
+/
+!'''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''
+&nampisbio     !   biological parameters
+!,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
+/
+!'''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''
+&nampislim     !   parameters for nutrient limitations
+!,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
+/
+!'''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''
+&nampisopt     !   parameters for optics
+!,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
+/ 
+!'''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''
+&nampisprod     !   parameters for phytoplankton growth
+!,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
+/
+!'''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''
+&nampismort     !   parameters for phytoplankton sinks
+!,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
+/
+!'''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''
+&nampismes     !   parameters for mesozooplankton
+!,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
+/
+!'''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''
+&nampiszoo     !   parameters for microzooplankton
+!,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
+/
+!'''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''
+&nampisfer     !   parameters for iron chemistry
+!,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
+/  
+!'''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''
+&nampisrem     !   parameters for remineralization
+!,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
+/
+!'''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''
+&nampiscal     !   parameters for Calcite chemistry
+!,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
+/
+!'''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''
+&nampissbc     !   parameters for inputs deposition
+!,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
+/
+!'''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''
+&nampiskrp     !   Kriest parameterization : parameters     "key_kriest"
+!,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
+/
+!'''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''
+&nampiskrs     !   Kriest parameterization : size classes  "key_kriest"
+!,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
+/
+!'''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''
+&nampisdia     !   additional 2D/3D tracers diagnostics 
+!,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
+/
+!'''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''
+&nampisdmp     !  Damping 
+!,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
+/
+!'''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''
+&nampismass     !  Mass conservation
+!,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
+/
Index: branches/2013/dev_r3853_CNRS9_ConfSetting/NEMOGCM/CONFIG/ORCA2_LIM_PISCES/EXP00/namelist_pisces_ref
===================================================================
--- branches/2013/dev_r3853_CNRS9_ConfSetting/NEMOGCM/CONFIG/ORCA2_LIM_PISCES/EXP00/namelist_pisces_ref	(revision 3875)
+++ branches/2013/dev_r3853_CNRS9_ConfSetting/NEMOGCM/CONFIG/ORCA2_LIM_PISCES/EXP00/namelist_pisces_ref	(revision 3875)
@@ -0,0 +1,1 @@
+link ../../SHARED/namelist_pisces_ref
Index: branches/2013/dev_r3853_CNRS9_ConfSetting/NEMOGCM/CONFIG/ORCA2_LIM_PISCES/EXP00/namelist_ref
===================================================================
--- branches/2013/dev_r3853_CNRS9_ConfSetting/NEMOGCM/CONFIG/ORCA2_LIM_PISCES/EXP00/namelist_ref	(revision 3875)
+++ branches/2013/dev_r3853_CNRS9_ConfSetting/NEMOGCM/CONFIG/ORCA2_LIM_PISCES/EXP00/namelist_ref	(revision 3875)
@@ -0,0 +1,1 @@
+link ../../SHARED/namelist_ref
Index: branches/2013/dev_r3853_CNRS9_ConfSetting/NEMOGCM/CONFIG/ORCA2_LIM_PISCES/EXP00/namelist_top
===================================================================
--- branches/2013/dev_r3853_CNRS9_ConfSetting/NEMOGCM/CONFIG/ORCA2_LIM_PISCES/EXP00/namelist_top	(revision 3854)
+++ 	(revision )
@@ -1,147 +1,0 @@
-!!>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
-!! NEMO/TOP1 :  1 - tracer definition                     (namtrc    )
-!!              2 - tracer data initialisation            (namtrc_dta)
-!!              3 - tracer advection                      (namtrc_adv)
-!!              4 - tracer lateral diffusion              (namtrc_ldf)
-!!              5 - tracer vertical physics               (namtrc_zdf)
-!!              6 - tracer newtonian damping              (namtrc_dmp)
-!!              7 - dynamical tracer trends               (namtrc_trd)
-!!              8 - tracer output diagonstics             (namtrc_dia)
-!>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
-!'''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''
-&namtrc     !   tracers definition
-!,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
-   nn_dttrc      =  1        !  time step frequency for passive sn_tracers      
-   nn_writetrc   =  5475     !  time step frequency for sn_tracer outputs
-   ln_rsttr      = .false.   !  start from a restart file (T) or not (F)
-   nn_rsttr      =   0       !  restart control = 0 initial time step is not compared to the restart file value
-                             !                  = 1 do not use the value in the restart file
-                             !                  = 2 calendar parameters read in the restart file
-   cn_trcrst_in  = "restart_trc"   !  suffix of pass. sn_tracer restart name (input)
-   cn_trcrst_out = "restart_trc"   !  suffix of pass. sn_tracer restart name (output)
-   ln_trcdta     =   .true.  !  Initialisation from data input file (T) or not (F)
-   ln_trcdmp     =  .false.  !  add a damping termn (T) or not (F)
-!
-!                !    name   !           title of the field              ! initial data ! initial data ! save   !
-!                !           !                                           !  units       ! from file    ! or not ! 
-!                !           !                                           !              ! or not       !        !
-   sn_tracer(1)   = 'DIC     ' , 'Dissolved inorganic Concentration      ',  'mol-C/L' ,  .true.     ,  .true.
-   sn_tracer(2)   = 'Alkalini' , 'Total Alkalinity Concentration         ',  'eq/L '   ,  .true.     ,  .true.
-   sn_tracer(3)   = 'O2      ' , 'Dissolved Oxygen Concentration         ',  'mol-C/L' ,  .true.     ,  .true.
-   sn_tracer(4)   = 'CaCO3   ' , 'Calcite Concentration                  ',  'mol-C/L' ,  .false.    ,  .true.
-   sn_tracer(5)   = 'PO4     ' , 'Phosphate Concentration                ',  'mol-C/L' ,  .true.     ,  .true.
-   sn_tracer(6)   = 'POC     ' , 'Small organic carbon Concentration     ',  'mol-C/L' ,  .false.    ,  .true.
-   sn_tracer(7)   = 'Si      ' , 'Silicate Concentration                 ',  'mol-C/L' ,  .true.     ,  .true.
-   sn_tracer(8)   = 'PHY     ' , 'Nanophytoplankton Concentration        ',  'mol-C/L' ,  .false.    ,  .true.
-   sn_tracer(9)   = 'ZOO     ' , 'Microzooplankton Concentration         ',  'mol-C/L' ,  .false.    ,  .true.
-   sn_tracer(10)  = 'DOC     ' , 'Dissolved organic Concentration        ',  'mol-C/L' ,  .true.     ,  .true.
-   sn_tracer(11)  = 'PHY2    ' , 'Diatoms Concentration                  ',  'mol-C/L' ,  .false.    ,  .true.
-   sn_tracer(12)  = 'ZOO2    ' , 'Mesozooplankton Concentration          ',  'mol-C/L' ,  .false.    ,  .true.
-   sn_tracer(13)  = 'DSi     ' , 'Diatoms Silicate Concentration         ',  'mol-C/L' ,  .false.    ,  .true.
-   sn_tracer(14)  = 'Fer     ' , 'Dissolved Iron Concentration           ',  'mol-C/L' ,  .true.     ,  .true.
-   sn_tracer(15)  = 'BFe     ' , 'Big iron particles Concentration       ',  'mol-C/L' ,  .false.    ,  .true.
-   sn_tracer(16)  = 'GOC     ' , 'Big organic carbon Concentration       ',  'mol-C/L' ,  .false.    ,  .true.
-   sn_tracer(17)  = 'SFe     ' , 'Small iron particles Concentration     ',  'mol-C/L' ,  .false.    ,  .true.
-   sn_tracer(18)  = 'DFe     ' , 'Diatoms iron  Concentration            ',  'mol-C/L' ,  .false.    ,  .true.
-   sn_tracer(19)  = 'GSi     ' , 'Sinking biogenic Silicate Concentration',  'mol-C/L' ,  .false.    ,  .true.
-   sn_tracer(20)  = 'NFe     ' , 'Nano iron Concentration                ',  'mol-C/L' ,  .false.    ,  .true.
-   sn_tracer(21)  = 'NCHL    ' , 'Nano chlorophyl Concentration          ',  'mol-C/L' ,  .false.    ,  .true.
-   sn_tracer(22)  = 'DCHL    ' , 'Diatoms chlorophyl Concentration       ',  'mol-C/L' ,  .false.    ,  .true.
-   sn_tracer(23)  = 'NO3     ' , 'Nitrates Concentration                 ',  'mol-C/L' ,  .true.     ,  .true.
-   sn_tracer(24)  = 'NH4     ' , 'Ammonium Concentration                 ',  'mol-C/L' ,  .false.    ,  .true.
-/
-!-----------------------------------------------------------------------
-&namtrc_dta      !    Initialisation from data input file
-!-----------------------------------------------------------------------
-!
-!                !  file name               ! frequency (hours) ! variable   ! time interp. !  clim  ! 'yearly'/ ! weights  ! rotation !
-!                !                          !  (if <0  months)  !   name     !   (logical)  !  (T/F) ! 'monthly' ! filename ! pairing  !
-   sn_trcdta(1)  = 'data_DIC_nomask'        ,        -12        ,  'DIC'     ,    .false.   , .true. , 'yearly'  , ''       , ''
-   sn_trcdta(2)  = 'data_Alkalini_nomask'   ,        -12        ,  'Alkalini',    .false.   , .true. , 'yearly'  , ''       , ''
-   sn_trcdta(3)  = 'data_O2_nomask'         ,        -1         ,  'O2'      ,    .true.    , .true. , 'yearly'  , ''       , ''
-   sn_trcdta(5)  = 'data_PO4_nomask'        ,        -1         ,  'PO4'     ,    .true.    , .true. , 'yearly'  , ''       , ''
-   sn_trcdta(7)  = 'data_Si_nomask'         ,        -1         ,  'Si'      ,    .true.    , .true. , 'yearly'  , ''       , ''
-   sn_trcdta(10) = 'data_DOC_nomask'        ,        -12        ,  'DOC'     ,    .false.   , .true. , 'yearly'  , ''       , ''
-   sn_trcdta(14) = 'data_Fer_nomask'        ,        -12        ,  'Fer'     ,    .false.   , .true. , 'yearly'  , ''       , ''
-   sn_trcdta(23) = 'data_NO3_nomask'        ,        -1         ,  'NO3'     ,    .true.    , .true. , 'yearly'  , ''       , ''
-!
-   cn_dir        =  './'      !  root directory for the location of the data files
-   rn_trfac(1)   =   1.0e-06  !  multiplicative factor
-   rn_trfac(2)   =   1.0e-06  !  -      -      -     -
-   rn_trfac(3)   =  44.6e-06  !  -      -      -     -
-   rn_trfac(5)   = 122.0e-06  !  -      -      -     -
-   rn_trfac(7)   =   1.0e-06  !  -      -      -     -
-   rn_trfac(10)  =   1.0      !  -      -      -     -
-   rn_trfac(14)  =   1.0      !  -      -      -     -
-   rn_trfac(23)  =   7.6e-06  !  -      -      -     -
-/
-!-----------------------------------------------------------------------
-&namtrc_adv    !   advection scheme for passive tracer 
-!-----------------------------------------------------------------------
-   ln_trcadv_cen2    =  .false.  !  2nd order centered scheme   
-   ln_trcadv_tvd     =  .false.  !  TVD scheme
-   ln_trcadv_muscl   =  .true.   !  MUSCL scheme
-   ln_trcadv_muscl2  =  .false.  !  MUSCL2 scheme + cen2 at boundaries
-   ln_trcadv_ubs     =  .false.  !  UBS scheme
-   ln_trcadv_qck     =  .false.  !  QUICKEST scheme
-   ln_trcadv_msc_ups =  .false.  !  use upstream scheme within muscl
-/
-!-----------------------------------------------------------------------
-&namtrc_ldf    !   lateral diffusion scheme for passive tracer 
-!-----------------------------------------------------------------------
-   ln_trcldf_diff   =  .true.   !  performs lateral diffusion (T) or not (F)
-!                               !  Type of the operator : 
-   ln_trcldf_lap    =  .true.   !     laplacian operator       
-   ln_trcldf_bilap  =  .false.  !     bilaplacian operator     
-                                !  Direction of action  :
-   ln_trcldf_level  =  .false.  !     iso-level                
-   ln_trcldf_hor    =  .false.  !     horizontal (geopotential)         (require "key_ldfslp" when ln_sco=T)
-   ln_trcldf_iso    =  .true.   !     iso-neutral                       (require "key_ldfslp")
-!                               !  Coefficient
-   rn_ahtrc_0       =  2000.    !  horizontal eddy diffusivity for tracers [m2/s]
-   rn_ahtrb_0       =     0.    !     background eddy diffusivity for ldf_iso [m2/s]
-/
-!-----------------------------------------------------------------------
-&namtrc_zdf        !   vertical physics
-!-----------------------------------------------------------------------
-   ln_trczdf_exp   =  .false.  !  split explicit (T) or implicit (F) time stepping
-   nn_trczdf_exp   =   3       !  number of sub-timestep for ln_trczdfexp=T
-/
-!-----------------------------------------------------------------------
-&namtrc_rad        !  treatment of negative concentrations 
-!-----------------------------------------------------------------------
-   ln_trcrad   =  .true.  !  artificially correct negative concentrations (T) or not (F)
-/
-!-----------------------------------------------------------------------
-&namtrc_dmp    !   passive tracer newtonian damping   
-!-----------------------------------------------------------------------
-   nn_hdmp_tr  =   -1      !  horizontal shape =-1, damping in Med and Red Seas only
-                           !                   =XX, damping poleward of XX degrees (XX>0)
-                           !                      + F(distance-to-coast) + Red and Med Seas
-   nn_zdmp_tr  =    1      !  vertical   shape =0    damping throughout the water column
-                           !                   =1 no damping in the mixing layer (kz  criteria)
-                           !                   =2 no damping in the mixed  layer (rho crieria)
-   rn_surf_tr  =   50.     !  surface time scale of damping   [days]
-   rn_bot_tr   =  360.     !  bottom  time scale of damping   [days]
-   rn_dep_tr   =  800.     !  depth of transition between rn_surf and rn_bot [meters]
-   nn_file_tr  =    0      !  create a damping.coeff NetCDF file (=1) or not (=0)
-/
-!-----------------------------------------------------------------------
-&namtrc_trd       !   diagnostics on tracer trends        ('key_trdtrc')
-!                          or mixed-layer trends          ('key_trdmld_trc')
-!----------------------------------------------------------------------
-   nn_trd_trc  =  5475      !  time step frequency and tracers trends
-   nn_ctls_trc =   0        !  control surface type in mixed-layer trends (0,1 or n<jpk)
-   rn_ucf_trc  =   1        !  unit conversion factor (=1 -> /seconds ; =86400. -> /day)
-   ln_trdmld_trc_restart = .false.  !  restart for ML diagnostics
-   ln_trdmld_trc_instant = .true.  !  flag to diagnose trends of instantantaneous or mean ML T/S
-   ln_trdtrc(1)  =   .true.
-   ln_trdtrc(2)  =   .true.
-   ln_trdtrc(23) =   .true.
-/
-!-----------------------------------------------------------------------
-&namtrc_dia       !   parameters for passive tracer additional diagnostics
-!----------------------------------------------------------------------
-   ln_diatrc     =  .true.   !  save additional diag. (T) or not (F)
-   nn_writedia   =  5475     !  time step frequency for diagnostics
-/
Index: branches/2013/dev_r3853_CNRS9_ConfSetting/NEMOGCM/CONFIG/ORCA2_LIM_PISCES/EXP00/namelist_top_cfg
===================================================================
--- branches/2013/dev_r3853_CNRS9_ConfSetting/NEMOGCM/CONFIG/ORCA2_LIM_PISCES/EXP00/namelist_top_cfg	(revision 3875)
+++ branches/2013/dev_r3853_CNRS9_ConfSetting/NEMOGCM/CONFIG/ORCA2_LIM_PISCES/EXP00/namelist_top_cfg	(revision 3875)
@@ -0,0 +1,85 @@
+!!>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
+!! NEMO/TOP1 :  Configuration namelist : used to overwrite defaults values defined in SHARED/namelist_top_ref
+!>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
+!'''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''
+&namtrc     !   tracers definition
+!,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
+!                !    name   !           title of the field              ! initial data ! initial data ! save   !
+!                !           !                                           !  units       ! from file    ! or not ! 
+!                !           !                                           !              ! or not       !        !
+   sn_tracer(1)   = 'DIC     ' , 'Dissolved inorganic Concentration      ',  'mol-C/L' ,  .true.     ,  .true.
+   sn_tracer(2)   = 'Alkalini' , 'Total Alkalinity Concentration         ',  'eq/L '   ,  .true.     ,  .true.
+   sn_tracer(3)   = 'O2      ' , 'Dissolved Oxygen Concentration         ',  'mol-C/L' ,  .true.     ,  .true.
+   sn_tracer(4)   = 'CaCO3   ' , 'Calcite Concentration                  ',  'mol-C/L' ,  .false.    ,  .true.
+   sn_tracer(5)   = 'PO4     ' , 'Phosphate Concentration                ',  'mol-C/L' ,  .true.     ,  .true.
+   sn_tracer(6)   = 'POC     ' , 'Small organic carbon Concentration     ',  'mol-C/L' ,  .false.    ,  .true.
+   sn_tracer(7)   = 'Si      ' , 'Silicate Concentration                 ',  'mol-C/L' ,  .true.     ,  .true.
+   sn_tracer(8)   = 'PHY     ' , 'Nanophytoplankton Concentration        ',  'mol-C/L' ,  .false.    ,  .true.
+   sn_tracer(9)   = 'ZOO     ' , 'Microzooplankton Concentration         ',  'mol-C/L' ,  .false.    ,  .true.
+   sn_tracer(10)  = 'DOC     ' , 'Dissolved organic Concentration        ',  'mol-C/L' ,  .true.     ,  .true.
+   sn_tracer(11)  = 'PHY2    ' , 'Diatoms Concentration                  ',  'mol-C/L' ,  .false.    ,  .true.
+   sn_tracer(12)  = 'ZOO2    ' , 'Mesozooplankton Concentration          ',  'mol-C/L' ,  .false.    ,  .true.
+   sn_tracer(13)  = 'DSi     ' , 'Diatoms Silicate Concentration         ',  'mol-C/L' ,  .false.    ,  .true.
+   sn_tracer(14)  = 'Fer     ' , 'Dissolved Iron Concentration           ',  'mol-C/L' ,  .true.     ,  .true.
+   sn_tracer(15)  = 'BFe     ' , 'Big iron particles Concentration       ',  'mol-C/L' ,  .false.    ,  .true.
+   sn_tracer(16)  = 'GOC     ' , 'Big organic carbon Concentration       ',  'mol-C/L' ,  .false.    ,  .true.
+   sn_tracer(17)  = 'SFe     ' , 'Small iron particles Concentration     ',  'mol-C/L' ,  .false.    ,  .true.
+   sn_tracer(18)  = 'DFe     ' , 'Diatoms iron  Concentration            ',  'mol-C/L' ,  .false.    ,  .true.
+   sn_tracer(19)  = 'GSi     ' , 'Sinking biogenic Silicate Concentration',  'mol-C/L' ,  .false.    ,  .true.
+   sn_tracer(20)  = 'NFe     ' , 'Nano iron Concentration                ',  'mol-C/L' ,  .false.    ,  .true.
+   sn_tracer(21)  = 'NCHL    ' , 'Nano chlorophyl Concentration          ',  'mol-C/L' ,  .false.    ,  .true.
+   sn_tracer(22)  = 'DCHL    ' , 'Diatoms chlorophyl Concentration       ',  'mol-C/L' ,  .false.    ,  .true.
+   sn_tracer(23)  = 'NO3     ' , 'Nitrates Concentration                 ',  'mol-C/L' ,  .true.     ,  .true.
+   sn_tracer(24)  = 'NH4     ' , 'Ammonium Concentration                 ',  'mol-C/L' ,  .false.    ,  .true.
+/
+!-----------------------------------------------------------------------
+&namtrc_dta      !    Initialisation from data input file
+!-----------------------------------------------------------------------
+!                !  file name               ! frequency (hours) ! variable   ! time interp. !  clim  ! 'yearly'/ ! weights  ! rotation !
+!                !                          !  (if <0  months)  !   name     !   (logical)  !  (T/F) ! 'monthly' ! filename ! pairing  !
+   sn_trcdta(1)  = 'data_DIC_nomask'        ,        -12        ,  'DIC'     ,    .false.   , .true. , 'yearly'  , ''       , ''
+   sn_trcdta(2)  = 'data_Alkalini_nomask'   ,        -12        ,  'Alkalini',    .false.   , .true. , 'yearly'  , ''       , ''
+   sn_trcdta(3)  = 'data_O2_nomask'         ,        -1         ,  'O2'      ,    .true.    , .true. , 'yearly'  , ''       , ''
+   sn_trcdta(5)  = 'data_PO4_nomask'        ,        -1         ,  'PO4'     ,    .true.    , .true. , 'yearly'  , ''       , ''
+   sn_trcdta(7)  = 'data_Si_nomask'         ,        -1         ,  'Si'      ,    .true.    , .true. , 'yearly'  , ''       , ''
+   sn_trcdta(10) = 'data_DOC_nomask'        ,        -12        ,  'DOC'     ,    .false.   , .true. , 'yearly'  , ''       , ''
+   sn_trcdta(14) = 'data_Fer_nomask'        ,        -12        ,  'Fer'     ,    .false.   , .true. , 'yearly'  , ''       , ''
+   sn_trcdta(23) = 'data_NO3_nomask'        ,        -1         ,  'NO3'     ,    .true.    , .true. , 'yearly'  , ''       , ''
+   rn_trfac(1)   =   1.0e-06  !  multiplicative factor
+   rn_trfac(2)   =   1.0e-06  !  -      -      -     -
+   rn_trfac(3)   =  44.6e-06  !  -      -      -     -
+   rn_trfac(5)   = 122.0e-06  !  -      -      -     -
+   rn_trfac(7)   =   1.0e-06  !  -      -      -     -
+   rn_trfac(10)  =   1.0      !  -      -      -     -
+   rn_trfac(14)  =   1.0      !  -      -      -     -
+   rn_trfac(23)  =   7.6e-06  !  -      -      -     -
+/
+!-----------------------------------------------------------------------
+&namtrc_adv    !   advection scheme for passive tracer 
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&namtrc_ldf    !   lateral diffusion scheme for passive tracer 
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&namtrc_zdf        !   vertical physics
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&namtrc_rad        !  treatment of negative concentrations 
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&namtrc_dmp    !   passive tracer newtonian damping   
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&namtrc_trd       !   diagnostics on tracer trends        ('key_trdtrc')
+!                          or mixed-layer trends          ('key_trdmld_trc')
+!----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&namtrc_dia       !   parameters for passive tracer additional diagnostics
+!----------------------------------------------------------------------
+/
Index: branches/2013/dev_r3853_CNRS9_ConfSetting/NEMOGCM/CONFIG/ORCA2_LIM_PISCES/EXP00/namelist_top_ref
===================================================================
--- branches/2013/dev_r3853_CNRS9_ConfSetting/NEMOGCM/CONFIG/ORCA2_LIM_PISCES/EXP00/namelist_top_ref	(revision 3875)
+++ branches/2013/dev_r3853_CNRS9_ConfSetting/NEMOGCM/CONFIG/ORCA2_LIM_PISCES/EXP00/namelist_top_ref	(revision 3875)
@@ -0,0 +1,1 @@
+link ../../SHARED/namelist_top_ref
