Changeset 5095 for branches/2015/dev_r5092_CNRS_SETTE/NEMOGCM

Timestamp:

2015-02-18T16:52:48+01:00 (9 years ago)

Author:

nicolasmartin

Message:

Global reorganisation of directory

Location:

branches/2015/dev_r5092_CNRS_SETTE/NEMOGCM/SETTE

Files:

• README (modified) (1 diff)
• SETTE.pdf (deleted)
• all_functions.sh (deleted)
• batch (moved) (moved from branches/2015/dev_r5092_CNRS_SETTE/NEMOGCM/SETTE/BATCH_TEMPLATE)
• cfg (added)
• cfg/input_AMM12.cfg (added)
• cfg/input_GYRE.cfg (added)
• cfg/input_ISOMIP.cfg (added)
• cfg/input_ORCA2_LIM.cfg (added)
• cfg/input_ORCA2_LIM3.cfg (added)
• cfg/input_ORCA2_LIM_AGRIF.cfg (added)
• cfg/input_ORCA2_LIM_OBS.cfg (added)
• cfg/input_ORCA2_LIM_PISCES.cfg (added)
• cfg/input_ORCA2_OFF_PISCES.cfg (added)
• cfg/input_SAS.cfg (added)
• cfg/param.cfg (added)
• doc (added)
• doc/SETTE.pdf (added)
• fcm_job.sh (deleted)
• input_AMM12.cfg (deleted)
• input_GYRE.cfg (deleted)
• input_ISOMIP.cfg (deleted)
• input_ORCA2_LIM.cfg (deleted)
• input_ORCA2_LIM3.cfg (deleted)
• input_ORCA2_LIM_AGRIF.cfg (deleted)
• input_ORCA2_LIM_OBS.cfg (deleted)
• input_ORCA2_LIM_PISCES.cfg (deleted)
• input_ORCA2_OFF_PISCES.cfg (deleted)
• input_SAS.cfg (deleted)
• inputs (added)
• inputs/iodef_sette.xml (added)
• iodef_sette.xml (deleted)
• param.cfg (deleted)
• prepare_exe_dir.sh (deleted)
• prepare_job.sh (deleted)
• scripts (added)
• scripts/all_functions.sh (added)
• scripts/fcm_job.sh (added)
• scripts/prepare_exe_dir.sh (added)
• scripts/prepare_job.sh (added)
• sette.env (added)
• testconf.sh (added)

branches/2015/dev_r5092_CNRS_SETTE/NEMOGCM/SETTE/README

@@ -80 +80 @@
 2. create you own batch file like: batch-${COMPILER}
 (note: sette.sh will copy it in job_batch_template if you run tests in INTERACT_FLAG="no")
+
+# Variables to be checked by user:
+#
+# COMPILER          : name of compiler as defined in NEMOGCM/ARCH directory 
+# BATCH_COMMAND_PAR :  name of the command for submitting parallel batch jobs
+# BATCH_COMMAND_SEQ :  name of the command for submitting sequential batch jobs  
+# INTERACT_FLAG     : flag to run in interactive mode "yes"
+#                           to run in batch mode "no"
+# MPIRUN_FLAG       : flag to run in parallel (MPI) "yes"
+#                           to run in sequential mode (NB_PROC = 1) "no"
+# USING_XIOS        : flag to control the activation of key_iomput
+#                      "yes" to compile using key_iomput and link to the external XIOS library
+#                      "no"  to compile without key_iomput and link to the old IOIPSL library
+# USING_MPMD        : flag to control the use of stand-alone IO servers
+#                     requires USING_XIOS="yes"
+#                      "yes" to run in MPMD (detached) mode with stand-alone IO servers
+#                      "no"  to run in SPMD (attached) mode without separate IO servers 
+# NUM_XIOSERVERS    : number of stand-alone IO servers to employ
+#                     set to zero if USING_MPMD="no"
+#
+# Principal script is sette.sh, that calls 
+#
+#  makenemo  : to create successive exectuables in ${CONFIG_NAME}/BLD/bin/nemo.exe 
+#              and links to opa in ${CONFIG_NAME}/EXP00)
+#
+#  param.cfg : sets and loads following directories:
+#
+#   FORCING_DIR         : is the directory for forcing files (tarfile)
+#   INPUT_DIR           : is the directory for input files storing 
+#   TMPDIR              : is the temporary directory (if needed)
+#   NEMO_VALIDATION_DIR : is the validation directory
+#
+#   (NOTE: this file is the same for all configrations to be tested with sette)
+#
+#   all_functions.sh : loads functions used by sette (note: new functions can be added here)
+#   set_namelist     : function declared in all_functions that sets namelist parameters 
+#   post_test_tidyup : creates validation storage directory and copies required output files 
+#                      (solver.stat and ocean.output) in it after execution of test.
+#
+#  VALIDATION tree is:
+#
+#   NEMO_VALIDATION_DIR/WCONFIG_NAME/WCOMPILER_NAME/TEST_NAME/REVISION_NUMBER(or DATE)
+#
+#  prepare_exe_dir.sh : defines and creates directory where the test is executed
+#                       execution directory takes name of TEST_NAME defined for every test 
+#                       in sette.sh. (each test in executed in its own directory)
+#
+#  prepare_job.sh     : to generate the script run_job.sh
+#
+#  fcm_job.sh         : run in batch (INTERACT_FLAG="no") or interactive (INTERACT_FLAG="yes")
+#                        see sette.sh and BATCH_TEMPLATE directory
+#
+#  NOTE: jobs requiring initial or forcing data need to have an input_CONFIG.cfg in which 
+#        can be found paths to the input tar file)
+#  NOTE: if job is not launched for any reason you have the executable ready in ${EXE_DIR} 
+#        directory
+#  NOTE: the changed namelists are left in ${EXE_DIR} directory whereas original namelists 
+#        remain in ${NEW_CONF}/EXP00
+# 
+#  NOTE: a log file, output.sette, is created in ${SETTE_DIR} with the echoes of 
+#        executed commands
+#
+#  NOTE: if sette.sh is stopped in output.sette there is written the last command 
+#        executed by sette.sh