- Timestamp:
- 2015-08-04T14:45:33+02:00 (9 years ago)
- File:
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- 1 edited
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branches/UKMO/2015_CO6_CO5_shelfdiagnostic/NEMOGCM/NEMO/OPA_SRC/IOM/iom.F90
r5422 r5666 61 61 #if defined key_iomput 62 62 PRIVATE iom_set_domain_attr, iom_set_axis_attr, iom_set_field_attr, iom_set_file_attr, iom_get_file_attr, iom_set_grid_attr 63 PRIVATE set_grid, set_ scalar, set_xmlatt, set_mooring, iom_update_file_name, iom_sdate63 PRIVATE set_grid, set_grid_bounds, set_scalar, set_xmlatt, set_mooring, iom_update_file_name, iom_sdate 64 64 # endif 65 65 … … 98 98 CHARACTER(len=10) :: clname 99 99 INTEGER :: ji 100 !!---------------------------------------------------------------------- 100 ! 101 REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: z_bnds 102 !!---------------------------------------------------------------------- 103 104 ALLOCATE( z_bnds(jpk,2) ) 101 105 102 106 clname = cdname 103 107 IF( TRIM(Agrif_CFixed()) /= '0' ) clname = TRIM(Agrif_CFixed())//"_"//TRIM(cdname) 104 # if defined key_mpp_mpi105 108 CALL xios_context_initialize(TRIM(clname), mpi_comm_opa) 106 # else107 CALL xios_context_initialize(TRIM(clname), 0)108 # endif109 109 CALL iom_swap( cdname ) 110 110 … … 121 121 CALL set_scalar 122 122 123 IF( TRIM(cdname) == "nemo") THEN123 IF( TRIM(cdname) == TRIM(cxios_context) ) THEN 124 124 CALL set_grid( "T", glamt, gphit ) 125 125 CALL set_grid( "U", glamu, gphiu ) 126 126 CALL set_grid( "V", glamv, gphiv ) 127 127 CALL set_grid( "W", glamt, gphit ) 128 ENDIF 129 130 IF( TRIM(cdname) == "nemo_crs" ) THEN 128 CALL set_grid_znl( gphit ) 129 ! 130 IF( ln_cfmeta ) THEN ! Add additional grid metadata 131 CALL iom_set_domain_attr("grid_T", area = e12t(nldi:nlei, nldj:nlej)) 132 CALL iom_set_domain_attr("grid_U", area = e12u(nldi:nlei, nldj:nlej)) 133 CALL iom_set_domain_attr("grid_V", area = e12v(nldi:nlei, nldj:nlej)) 134 CALL iom_set_domain_attr("grid_W", area = e12t(nldi:nlei, nldj:nlej)) 135 CALL set_grid_bounds( "T", glamf, gphif, glamt, gphit ) 136 CALL set_grid_bounds( "U", glamv, gphiv, glamu, gphiu ) 137 CALL set_grid_bounds( "V", glamu, gphiu, glamv, gphiv ) 138 CALL set_grid_bounds( "W", glamf, gphif, glamt, gphit ) 139 ENDIF 140 ENDIF 141 142 IF( TRIM(cdname) == TRIM(cxios_context)//"_crs" ) THEN 131 143 CALL dom_grid_crs ! Save the parent grid information & Switch to coarse grid domain 132 144 ! … … 135 147 CALL set_grid( "V", glamv_crs, gphiv_crs ) 136 148 CALL set_grid( "W", glamt_crs, gphit_crs ) 149 CALL set_grid_znl( gphit_crs ) 137 150 ! 138 151 CALL dom_grid_glo ! Return to parent grid domain 139 ENDIF 140 152 ! 153 IF( ln_cfmeta ) THEN ! Add additional grid metadata 154 CALL iom_set_domain_attr("grid_T", area = e1e2t_crs(nldi:nlei, nldj:nlej)) 155 CALL iom_set_domain_attr("grid_U", area = e1u_crs(nldi:nlei, nldj:nlej) * e2u_crs(nldi:nlei, nldj:nlej)) 156 CALL iom_set_domain_attr("grid_V", area = e1v_crs(nldi:nlei, nldj:nlej) * e2v_crs(nldi:nlei, nldj:nlej)) 157 CALL iom_set_domain_attr("grid_W", area = e1e2t_crs(nldi:nlei, nldj:nlej)) 158 CALL set_grid_bounds( "T", glamf_crs, gphif_crs, glamt_crs, gphit_crs ) 159 CALL set_grid_bounds( "U", glamv_crs, gphiv_crs, glamu_crs, gphiu_crs ) 160 CALL set_grid_bounds( "V", glamu_crs, gphiu_crs, glamv_crs, gphiv_crs ) 161 CALL set_grid_bounds( "W", glamf_crs, gphif_crs, glamt_crs, gphit_crs ) 162 ENDIF 163 ENDIF 141 164 142 165 ! vertical grid definition … … 145 168 CALL iom_set_axis_attr( "depthv", gdept_1d ) 146 169 CALL iom_set_axis_attr( "depthw", gdepw_1d ) 170 171 ! Add vertical grid bounds 172 z_bnds(: ,1) = gdepw_1d(:) 173 z_bnds(1:jpkm1,2) = gdepw_1d(2:jpk) 174 z_bnds(jpk: ,2) = gdepw_1d(jpk) + e3t_1d(jpk) 175 CALL iom_set_axis_attr( "deptht", bounds=z_bnds ) 176 CALL iom_set_axis_attr( "depthu", bounds=z_bnds ) 177 CALL iom_set_axis_attr( "depthv", bounds=z_bnds ) 178 z_bnds(: ,2) = gdept_1d(:) 179 z_bnds(2:jpk,1) = gdept_1d(1:jpkm1) 180 z_bnds(1 ,1) = gdept_1d(1) - e3w_1d(1) 181 CALL iom_set_axis_attr( "depthw", bounds=z_bnds ) 182 147 183 # if defined key_floats 148 184 CALL iom_set_axis_attr( "nfloat", (/ (REAL(ji,wp), ji=1,nfloat) /) ) … … 152 188 #endif 153 189 CALL iom_set_axis_attr( "icbcla", class_num ) 190 CALL iom_set_axis_attr( "iax_20C", (/ REAL(20,wp) /) ) 191 CALL iom_set_axis_attr( "iax_28C", (/ REAL(28,wp) /) ) 154 192 155 193 ! automatic definitions of some of the xml attributs … … 162 200 163 201 CALL xios_update_calendar(0) 202 203 DEALLOCATE( z_bnds ) 204 164 205 #endif 165 206 … … 1107 1148 1108 1149 SUBROUTINE iom_set_domain_attr( cdid, ni_glo, nj_glo, ibegin, jbegin, ni, nj, zoom_ibegin, zoom_jbegin, zoom_ni, zoom_nj, & 1109 & data_dim, data_ibegin, data_ni, data_jbegin, data_nj, lonvalue, latvalue, mask ) 1110 CHARACTER(LEN=*) , INTENT(in) :: cdid 1111 INTEGER , OPTIONAL, INTENT(in) :: ni_glo, nj_glo, ibegin, jbegin, ni, nj 1112 INTEGER , OPTIONAL, INTENT(in) :: data_dim, data_ibegin, data_ni, data_jbegin, data_nj 1113 INTEGER , OPTIONAL, INTENT(in) :: zoom_ibegin, zoom_jbegin, zoom_ni, zoom_nj 1114 REAL(wp), DIMENSION(:) , OPTIONAL, INTENT(in) :: lonvalue, latvalue 1115 LOGICAL, DIMENSION(:,:), OPTIONAL, INTENT(in) :: mask 1150 & data_dim, data_ibegin, data_ni, data_jbegin, data_nj, lonvalue, latvalue, mask, & 1151 & nvertex, bounds_lon, bounds_lat, area ) 1152 CHARACTER(LEN=*) , INTENT(in) :: cdid 1153 INTEGER , OPTIONAL, INTENT(in) :: ni_glo, nj_glo, ibegin, jbegin, ni, nj 1154 INTEGER , OPTIONAL, INTENT(in) :: data_dim, data_ibegin, data_ni, data_jbegin, data_nj 1155 INTEGER , OPTIONAL, INTENT(in) :: zoom_ibegin, zoom_jbegin, zoom_ni, zoom_nj, nvertex 1156 REAL(wp), DIMENSION(:) , OPTIONAL, INTENT(in) :: lonvalue, latvalue 1157 REAL(wp), DIMENSION(:,:) , OPTIONAL, INTENT(in) :: bounds_lon, bounds_lat, area 1158 LOGICAL, DIMENSION(:,:) , OPTIONAL, INTENT(in) :: mask 1116 1159 1117 1160 IF ( xios_is_valid_domain (cdid) ) THEN … … 1119 1162 & data_dim=data_dim, data_ibegin=data_ibegin, data_ni=data_ni, data_jbegin=data_jbegin, data_nj=data_nj , & 1120 1163 & zoom_ibegin=zoom_ibegin, zoom_jbegin=zoom_jbegin, zoom_ni=zoom_ni, zoom_nj=zoom_nj, & 1121 & lonvalue=lonvalue, latvalue=latvalue,mask=mask ) 1164 & lonvalue=lonvalue, latvalue=latvalue, mask=mask, nvertex=nvertex, bounds_lon=bounds_lon, & 1165 & bounds_lat=bounds_lat, area=area ) 1122 1166 ENDIF 1123 1167 … … 1126 1170 & data_dim=data_dim, data_ibegin=data_ibegin, data_ni=data_ni, data_jbegin=data_jbegin, data_nj=data_nj , & 1127 1171 & zoom_ibegin=zoom_ibegin, zoom_jbegin=zoom_jbegin, zoom_ni=zoom_ni, zoom_nj=zoom_nj, & 1128 & lonvalue=lonvalue, latvalue=latvalue,mask=mask ) 1172 & lonvalue=lonvalue, latvalue=latvalue, mask=mask, nvertex=nvertex, bounds_lon=bounds_lon, & 1173 & bounds_lat=bounds_lat, area=area ) 1129 1174 ENDIF 1130 1175 CALL xios_solve_inheritance() … … 1133 1178 1134 1179 1135 SUBROUTINE iom_set_axis_attr( cdid, paxis )1180 SUBROUTINE iom_set_axis_attr( cdid, paxis, bounds ) 1136 1181 CHARACTER(LEN=*) , INTENT(in) :: cdid 1137 REAL(wp), DIMENSION(:), INTENT(in) :: paxis 1138 IF ( xios_is_valid_axis (cdid) ) CALL xios_set_axis_attr ( cdid, size=size(paxis),value=paxis ) 1139 IF ( xios_is_valid_axisgroup(cdid) ) CALL xios_set_axisgroup_attr( cdid, size=size(paxis),value=paxis ) 1182 REAL(wp), DIMENSION(:) , OPTIONAL, INTENT(in) :: paxis 1183 REAL(wp), DIMENSION(:,:), OPTIONAL, INTENT(in) :: bounds 1184 IF ( PRESENT(paxis) ) THEN 1185 IF ( xios_is_valid_axis (cdid) ) CALL xios_set_axis_attr ( cdid, size=SIZE(paxis), value=paxis ) 1186 IF ( xios_is_valid_axisgroup(cdid) ) CALL xios_set_axisgroup_attr( cdid, size=SIZE(paxis), value=paxis ) 1187 ENDIF 1188 IF ( xios_is_valid_axis (cdid) ) CALL xios_set_axis_attr ( cdid, bounds=bounds ) 1189 IF ( xios_is_valid_axisgroup(cdid) ) CALL xios_set_axisgroup_attr( cdid, bounds=bounds ) 1140 1190 CALL xios_solve_inheritance() 1141 1191 END SUBROUTINE iom_set_axis_attr … … 1200 1250 CALL iom_swap( cdname ) ! swap to cdname context 1201 1251 CALL xios_update_calendar(kt) 1202 IF( cdname /= "nemo" ) CALL iom_swap( "nemo") ! return back to nemo context1252 IF( cdname /= TRIM(cxios_context) ) CALL iom_swap( TRIM(cxios_context) ) ! return back to nemo context 1203 1253 ! 1204 1254 END SUBROUTINE iom_setkt … … 1210 1260 CALL iom_swap( cdname ) ! swap to cdname context 1211 1261 CALL xios_context_finalize() ! finalize the context 1212 IF( cdname /= "nemo" ) CALL iom_swap( "nemo") ! return back to nemo context1262 IF( cdname /= TRIM(cxios_context) ) CALL iom_swap( TRIM(cxios_context) ) ! return back to nemo context 1213 1263 ENDIF 1214 1264 ! … … 1253 1303 1254 1304 1305 SUBROUTINE set_grid_bounds( cdgrd, plon_cnr, plat_cnr, plon_pnt, plat_pnt ) 1306 !!---------------------------------------------------------------------- 1307 !! *** ROUTINE set_grid_bounds *** 1308 !! 1309 !! ** Purpose : define horizontal grid corners 1310 !! 1311 !!---------------------------------------------------------------------- 1312 CHARACTER(LEN=1) , INTENT(in) :: cdgrd 1313 ! 1314 REAL(wp), DIMENSION(jpi,jpj), INTENT(in) :: plon_cnr, plat_cnr ! Lat/lon coordinates of a contiguous vertex of cell (i,j) 1315 REAL(wp), DIMENSION(jpi,jpj), OPTIONAL, INTENT(in) :: plon_pnt, plat_pnt ! Lat/lon coordinates of the point of cell (i,j) 1316 ! 1317 REAL(wp), ALLOCATABLE, DIMENSION(:,:,:,:) :: z_bnds ! Lat/lon coordinates of the vertices of cell (i,j) 1318 REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: z_fld ! Working array to determine where to rotate cells 1319 REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: z_rot ! Lat/lon working array for rotation of cells 1320 ! 1321 INTEGER :: icnr, jcnr ! Offset such that the vertex coordinate (i+icnr,j+jcnr) 1322 ! ! represents the bottom-left corner of cell (i,j) 1323 INTEGER :: ji, jj, jn, ni, nj 1324 1325 ALLOCATE( z_bnds(4,jpi,jpj,2), z_fld(jpi,jpj), z_rot(4,2) ) 1326 1327 ! Offset of coordinate representing bottom-left corner 1328 SELECT CASE ( TRIM(cdgrd) ) 1329 CASE ('T', 'W') 1330 icnr = -1 ; jcnr = -1 1331 CASE ('U') 1332 icnr = 0 ; jcnr = -1 1333 CASE ('V') 1334 icnr = -1 ; jcnr = 0 1335 END SELECT 1336 1337 ni = nlei-nldi+1 ; nj = nlej-nldj+1 ! Dimensions of subdomain interior 1338 1339 z_fld(:,:) = 1._wp 1340 CALL lbc_lnk( z_fld, cdgrd, -1. ) ! Working array for location of northfold 1341 1342 ! Cell vertices that can be defined 1343 DO jj = 2, jpjm1 1344 DO ji = 2, jpim1 1345 z_bnds(1,ji,jj,1) = plat_cnr(ji+icnr, jj+jcnr ) ! Bottom-left 1346 z_bnds(2,ji,jj,1) = plat_cnr(ji+icnr+1,jj+jcnr ) ! Bottom-right 1347 z_bnds(3,ji,jj,1) = plat_cnr(ji+icnr+1,jj+jcnr+1) ! Top-right 1348 z_bnds(4,ji,jj,1) = plat_cnr(ji+icnr, jj+jcnr+1) ! Top-left 1349 z_bnds(1,ji,jj,2) = plon_cnr(ji+icnr, jj+jcnr ) ! Bottom-left 1350 z_bnds(2,ji,jj,2) = plon_cnr(ji+icnr+1,jj+jcnr ) ! Bottom-right 1351 z_bnds(3,ji,jj,2) = plon_cnr(ji+icnr+1,jj+jcnr+1) ! Top-right 1352 z_bnds(4,ji,jj,2) = plon_cnr(ji+icnr, jj+jcnr+1) ! Top-left 1353 END DO 1354 END DO 1355 1356 ! Cell vertices on boundries 1357 DO jn = 1, 4 1358 CALL lbc_lnk( z_bnds(jn,:,:,1), cdgrd, 1., pval=999._wp ) 1359 CALL lbc_lnk( z_bnds(jn,:,:,2), cdgrd, 1., pval=999._wp ) 1360 END DO 1361 1362 ! Zero-size cells at closed boundaries if cell points provided, 1363 ! otherwise they are closed cells with unrealistic bounds 1364 IF( PRESENT(plon_pnt) .AND. PRESENT(plat_pnt) ) THEN 1365 IF( (nbondi == -1 .OR. nbondi == 2) .AND. .NOT. (jperio == 1 .OR. jperio == 4 .OR. jperio == 6) ) THEN 1366 DO jn = 1, 4 ! (West or jpni = 1), closed E-W 1367 z_bnds(jn,1,:,1) = plat_pnt(1,:) ; z_bnds(jn,1,:,2) = plon_pnt(1,:) 1368 END DO 1369 ENDIF 1370 IF( (nbondi == 1 .OR. nbondi == 2) .AND. .NOT. (jperio == 1 .OR. jperio == 4 .OR. jperio == 6) ) THEN 1371 DO jn = 1, 4 ! (East or jpni = 1), closed E-W 1372 z_bnds(jn,nlci,:,1) = plat_pnt(nlci,:) ; z_bnds(jn,nlci,:,2) = plon_pnt(nlci,:) 1373 END DO 1374 ENDIF 1375 IF( nbondj == -1 .OR. (nbondj == 2 .AND. jperio /= 2) ) THEN 1376 DO jn = 1, 4 ! South or (jpnj = 1, not symmetric) 1377 z_bnds(jn,:,1,1) = plat_pnt(:,1) ; z_bnds(jn,:,1,2) = plon_pnt(:,1) 1378 END DO 1379 ENDIF 1380 IF( (nbondj == 1 .OR. nbondj == 2) .AND. jperio < 3 ) THEN 1381 DO jn = 1, 4 ! (North or jpnj = 1), no north fold 1382 z_bnds(jn,:,nlcj,1) = plat_pnt(:,nlcj) ; z_bnds(jn,:,nlcj,2) = plon_pnt(:,nlcj) 1383 END DO 1384 ENDIF 1385 ENDIF 1386 1387 ! Rotate cells at the north fold 1388 IF( (nbondj == 1 .OR. nbondj == 2) .AND. jperio >= 3 ) THEN 1389 DO jj = 1, jpj 1390 DO ji = 1, jpi 1391 IF( z_fld(ji,jj) == -1. ) THEN 1392 z_rot(1,:) = z_bnds(3,ji,jj,:) ; z_rot(2,:) = z_bnds(4,ji,jj,:) 1393 z_rot(3,:) = z_bnds(1,ji,jj,:) ; z_rot(4,:) = z_bnds(2,ji,jj,:) 1394 z_bnds(:,ji,jj,:) = z_rot(:,:) 1395 ENDIF 1396 END DO 1397 END DO 1398 1399 ! Invert cells at the symmetric equator 1400 ELSE IF( nbondj == 2 .AND. jperio == 2 ) THEN 1401 DO ji = 1, jpi 1402 z_rot(1:2,:) = z_bnds(3:4,ji,1,:) 1403 z_rot(3:4,:) = z_bnds(1:2,ji,1,:) 1404 z_bnds(:,ji,1,:) = z_rot(:,:) 1405 END DO 1406 ENDIF 1407 1408 CALL iom_set_domain_attr("grid_"//cdgrd, bounds_lat = RESHAPE(z_bnds(:,nldi:nlei,nldj:nlej,1),(/ 4,ni*nj /)), & 1409 bounds_lon = RESHAPE(z_bnds(:,nldi:nlei,nldj:nlej,2),(/ 4,ni*nj /)), nvertex=4 ) 1410 1411 DEALLOCATE( z_bnds, z_fld, z_rot ) 1412 1413 END SUBROUTINE set_grid_bounds 1414 1415 1416 SUBROUTINE set_grid_znl( plat ) 1417 !!---------------------------------------------------------------------- 1418 !! *** ROUTINE set_grid_znl *** 1419 !! 1420 !! ** Purpose : define grids for zonal mean 1421 !! 1422 !!---------------------------------------------------------------------- 1423 REAL(wp), DIMENSION(jpi,jpj), INTENT(in) :: plat 1424 ! 1425 REAL(wp), DIMENSION(:), ALLOCATABLE :: zlon 1426 INTEGER :: ni,nj, ix, iy 1427 1428 1429 ni=nlei-nldi+1 ; nj=nlej-nldj+1 ! define zonal mean domain (jpj*jpk) 1430 ALLOCATE( zlon(ni*nj) ) ; zlon(:) = 0. 1431 1432 CALL iom_set_domain_attr("gznl", ni_glo=jpiglo, nj_glo=jpjglo, ibegin=nimpp+nldi-1, jbegin=njmpp+nldj-1, ni=ni, nj=nj) 1433 CALL iom_set_domain_attr("gznl", data_dim=2, data_ibegin = 1-nldi, data_ni = jpi, data_jbegin = 1-nldj, data_nj = jpj) 1434 CALL iom_set_domain_attr("gznl", lonvalue = zlon, & 1435 & latvalue = RESHAPE(plat(nldi:nlei, nldj:nlej),(/ ni*nj /))) 1436 ! 1437 CALL dom_ngb( 180., 90., ix, iy, 'T' ) ! i-line that passes near the North Pole : Reference latitude (used in plots) 1438 CALL iom_set_domain_attr ('ptr', zoom_ibegin=ix, zoom_nj=jpjglo) 1439 CALL iom_update_file_name('ptr') 1440 ! 1441 END SUBROUTINE set_grid_znl 1442 1255 1443 SUBROUTINE set_scalar 1256 1444 !!---------------------------------------------------------------------- … … 1260 1448 !! 1261 1449 !!---------------------------------------------------------------------- 1262 REAL(wp), DIMENSION(1) :: zz = 1.1450 REAL(wp), DIMENSION(1) :: zz = 1. 1263 1451 !!---------------------------------------------------------------------- 1264 1452 CALL iom_set_domain_attr('scalarpoint', ni_glo=jpnij, nj_glo=1, ibegin=narea, jbegin=1, ni=1, nj=1) 1265 1453 CALL iom_set_domain_attr('scalarpoint', data_dim=2, data_ibegin = 1, data_ni = 1, data_jbegin = 1, data_nj = 1) 1454 1266 1455 zz=REAL(narea,wp) 1267 1456 CALL iom_set_domain_attr('scalarpoint', lonvalue=zz, latvalue=zz) … … 1337 1526 CALL set_mooring( zlonpira, zlatpira ) 1338 1527 1339 ! diaptr : zonal mean1340 CALL dom_ngb( 180., 90., ix, iy, 'T' ) ! i-line that passes near the North Pole : Reference latitude (used in plots)1341 CALL iom_set_domain_attr ('ptr', zoom_ibegin=ix, zoom_nj=jpjglo)1342 CALL iom_update_file_name('ptr')1343 !1344 1528 1345 1529 END SUBROUTINE set_xmlatt
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