Index: branches/2014/dev_r4650_UKMO12_CFL_diags_take2/NEMOGCM/CONFIG/ORCA2_OFF_PISCES/EXP00/iodef.xml
===================================================================
--- branches/2014/dev_r4650_UKMO12_CFL_diags_take2/NEMOGCM/CONFIG/ORCA2_OFF_PISCES/EXP00/iodef.xml	(revision 4712)
+++ branches/2014/dev_r4650_UKMO12_CFL_diags_take2/NEMOGCM/CONFIG/ORCA2_OFF_PISCES/EXP00/iodef.xml	(revision 5832)
@@ -30,5 +30,20 @@
       <file_group id="6h" output_freq="6h"  output_level="10" enabled=".TRUE."/> <!-- 6h files -->
      
-      <file_group id="1d" output_freq="1d"  output_level="10" enabled=".TRUE."/> <!-- 1d files -->
+      <file_group id="1d" output_freq="1d"  output_level="10" enabled=".TRUE."> <!-- 1d files -->
+        <file id="file1" name_suffix="_bioscalar" description="pisces sms variables" >
+           <field field_ref="tdenit"   name="tdenit"   unit="TgN/yr" operation="instant" > tdenit * 14. * 86400. * 365. / 1e12 </field>
+           <field field_ref="tnfix"    name="tnfix"    unit="TgN/yr" operation="instant" > tnfix * 14. * 86400. * 365. / 1e12 </field>
+           <field field_ref="tcflx"    name="tcflx"    unit="PgC/yr" operation="instant" > tcflx * -1. * 12. * 86400. * 365. / 1e15 </field>
+           <field field_ref="tcflxcum" name="tcflxcum" unit="PgC"    operation="instant" > tcflxcum * -1. * 12. / 1e15 </field>
+           <field field_ref="tcexp"    name="tcexp"    unit="PgC/yr" operation="instant" > tcexp * 12. * 86400. * 365. / 1e15 </field>
+           <field field_ref="tintpp"   name="tintpp"   unit="PgC/yr" operation="instant" > tintpp * 12. * 86400. * 365. / 1e15 </field>
+           <field field_ref="pno3tot"  name="pno3tot"  unit="umolN"  > pno3tot * 16. / 122. * 1e6 </field>
+           <field field_ref="ppo4tot"  name="ppo4tot"  unit="umolP"  > ppo4tot * 1. / 122. * 1e6 </field>
+           <field field_ref="psiltot"  name="psiltot"  unit="umolC"  > psiltot * 1e6  </field>
+           <field field_ref="palktot"  name="palktot"  unit="umolC"  > palktot * 1e6  </field>
+           <field field_ref="pfertot"  name="pfertot"  unit="nmolFe" > pfertot * 1e9  </field>
+        </file>
+      </file_group>
+
       <file_group id="3d" output_freq="3d"  output_level="10" enabled=".TRUE."/> <!-- 3d files -->    
       <file_group id="5d" output_freq="5d"  output_level="10" enabled=".TRUE."/>  <!-- 5d files -->   
@@ -36,5 +51,5 @@
       <file_group id="1m" output_freq="1mo" output_level="10" enabled=".TRUE."> <!-- real monthly files -->
 
-	<file id="file1" name_suffix="_ptrc_T" description="pisces sms variables" >
+	<file id="file2" name_suffix="_ptrc_T" description="pisces sms variables" >
           <field field_ref="DIC"      />
           <field field_ref="Alkalini" />
@@ -48,5 +63,5 @@
 	</file>
 	
-	<file id="file2" name_suffix="_diad_T" description="additional pisces diagnostics" >
+	<file id="file3" name_suffix="_diad_T" description="additional pisces diagnostics" >
           <field field_ref="Cflx"     />
           <field field_ref="Dpco2"    />
@@ -61,5 +76,5 @@
       <file_group id="1y"  output_freq="1y" output_level="10" enabled=".TRUE."> <!-- real yearly files -->
 
-	<file id="file3" name_suffix="_ptrc_T" description="pisces sms variables" >
+	<file id="file4" name_suffix="_ptrc_T" description="pisces sms variables" >
           <field field_ref="DIC"      />
           <field field_ref="Alkalini" />
@@ -88,5 +103,5 @@
 	</file>
 
-	<file id="file4" name_suffix="_diad_T" description="additional pisces diagnostics" >
+	<file id="file5" name_suffix="_diad_T" description="additional pisces diagnostics" >
           <field field_ref="PH"       />
           <field field_ref="CO3"      />
@@ -153,10 +168,13 @@
     
    <axis_definition>  
-      <axis id="deptht" long_name="Vertical T levels" unit="m" positive="down" />
-      <axis id="depthu" long_name="Vertical U levels" unit="m" positive="down" />
-      <axis id="depthv" long_name="Vertical V levels" unit="m" positive="down" />
-      <axis id="depthw" long_name="Vertical W levels" unit="m" positive="down" />
-      <axis id="nfloat" long_name="Float number"      unit="-"  />
-      <axis id="icbcla" long_name="Iceberg class"     unit="-"  />
+      <axis id="deptht"  long_name="Vertical T levels"  unit="m" positive="down" />
+      <axis id="depthu"  long_name="Vertical U levels"  unit="m" positive="down" />
+      <axis id="depthv"  long_name="Vertical V levels"  unit="m" positive="down" />
+      <axis id="depthw"  long_name="Vertical W levels"  unit="m" positive="down" />
+      <axis id="nfloat"  long_name="Float number"       unit="1"                 />
+      <axis id="icbcla"  long_name="Iceberg class"      unit="1"                 />
+      <axis id="ncatice" long_name="Ice category"       unit="1"                 />
+      <axis id="iax_20C" long_name="20 degC isotherm"   unit="degC"              />
+      <axis id="iax_28C" long_name="28 degC isotherm"   unit="degC"              />
    </axis_definition> 
     
Index: branches/2014/dev_r4650_UKMO12_CFL_diags_take2/NEMOGCM/CONFIG/ORCA2_OFF_PISCES/EXP00/namelist_cfg
===================================================================
--- branches/2014/dev_r4650_UKMO12_CFL_diags_take2/NEMOGCM/CONFIG/ORCA2_OFF_PISCES/EXP00/namelist_cfg	(revision 4712)
+++ branches/2014/dev_r4650_UKMO12_CFL_diags_take2/NEMOGCM/CONFIG/ORCA2_OFF_PISCES/EXP00/namelist_cfg	(revision 5832)
@@ -67,4 +67,5 @@
 !-----------------------------------------------------------------------
    nn_fsbc     = 1         !  frequency of surface boundary condition computation 
+   ln_rnf      = .false.   !  runoffs
 /  
 !-----------------------------------------------------------------------
Index: branches/2014/dev_r4650_UKMO12_CFL_diags_take2/NEMOGCM/CONFIG/ORCA2_OFF_PISCES/EXP00/namelist_top_cfg
===================================================================
--- branches/2014/dev_r4650_UKMO12_CFL_diags_take2/NEMOGCM/CONFIG/ORCA2_OFF_PISCES/EXP00/namelist_top_cfg	(revision 4712)
+++ branches/2014/dev_r4650_UKMO12_CFL_diags_take2/NEMOGCM/CONFIG/ORCA2_OFF_PISCES/EXP00/namelist_top_cfg	(revision 5832)
@@ -6,5 +6,4 @@
 !-----------------------------------------------------------------------
    nn_writetrc   =  1460     !  time step frequency for sn_tracer outputs
-   ln_top_euler  = .true.    !  use Euler time-stepping for TOP
 /
 !-----------------------------------------------------------------------
