Changeset 5965 for branches/2014/dev_r4650_UKMO14.5_SST_BIAS_CORRECTION/NEMOGCM/NEMO/TOP_SRC/PISCES/P4Z/p4zsed.F90
- Timestamp:
- 2015-12-01T16:35:30+01:00 (8 years ago)
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branches/2014/dev_r4650_UKMO14.5_SST_BIAS_CORRECTION/NEMOGCM/NEMO/TOP_SRC/PISCES/P4Z/p4zsed.F90
- Property svn:keywords set to Id
r4641 r5965 21 21 USE p4zopt ! optical model 22 22 USE p4zlim ! Co-limitations of differents nutrients 23 USE p4zrem ! Remineralisation of organic matter24 23 USE p4zsbc ! External source of nutrients 25 24 USE p4zint ! interpolation and computation of various fields … … 30 29 PRIVATE 31 30 32 PUBLIC p4z_sed 31 PUBLIC p4z_sed 32 PUBLIC p4z_sed_alloc 33 33 34 34 35 !! * Module variables 35 REAL(wp) :: ryyss !: number of seconds per year 36 REAL(wp) :: r1_ryyss !: inverse of ryyss 37 REAL(wp) :: rmtss !: number of seconds per month 36 REAL(wp), PUBLIC, ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: nitrpot !: Nitrogen fixation 37 REAL(wp), PUBLIC, ALLOCATABLE, SAVE, DIMENSION(:,: ) :: sdenit !: Nitrate reduction in the sediments 38 38 REAL(wp) :: r1_rday !: inverse of rday 39 40 INTEGER :: numnit41 42 39 43 40 !!* Substitution … … 45 42 !!---------------------------------------------------------------------- 46 43 !! NEMO/TOP 3.3 , NEMO Consortium (2010) 47 !! $ Header:$44 !! $Id$ 48 45 !! Software governed by the CeCILL licence (NEMOGCM/NEMO_CeCILL.txt) 49 46 !!---------------------------------------------------------------------- 50 47 CONTAINS 51 48 52 SUBROUTINE p4z_sed( kt, jnt )49 SUBROUTINE p4z_sed( kt, knt ) 53 50 !!--------------------------------------------------------------------- 54 51 !! *** ROUTINE p4z_sed *** … … 61 58 !!--------------------------------------------------------------------- 62 59 ! 63 INTEGER, INTENT(in) :: kt, jnt ! ocean time step60 INTEGER, INTENT(in) :: kt, knt ! ocean time step 64 61 INTEGER :: ji, jj, jk, ikt 65 62 #if ! defined key_sed … … 72 69 REAL(wp) :: zsiloss, zcaloss, zws3, zws4, zwsc, zdep, zwstpoc 73 70 REAL(wp) :: ztrfer, ztrpo4, zwdust, zlight 74 REAL(wp) :: zrdenittot, zsdenittot, znitrpottot75 71 ! 76 72 CHARACTER (len=25) :: charout 77 REAL(wp), POINTER, DIMENSION(:,: ) :: zpdep, zsidep, zwork1, zwork2, zwork3 , zwork473 REAL(wp), POINTER, DIMENSION(:,: ) :: zpdep, zsidep, zwork1, zwork2, zwork3 78 74 REAL(wp), POINTER, DIMENSION(:,: ) :: zdenit2d, zironice, zbureff 79 75 REAL(wp), POINTER, DIMENSION(:,: ) :: zwsbio3, zwsbio4, zwscal 80 REAL(wp), POINTER, DIMENSION(:,:,:) :: z nitrpot, zirondep, zsoufer76 REAL(wp), POINTER, DIMENSION(:,:,:) :: zirondep, zsoufer 81 77 !!--------------------------------------------------------------------- 82 78 ! 83 79 IF( nn_timing == 1 ) CALL timing_start('p4z_sed') 84 80 ! 85 IF( kt == nittrc000 .AND. jnt == 1 ) THEN 86 ryyss = nyear_len(1) * rday ! number of seconds per year and per month 87 rmtss = ryyss / raamo 88 r1_rday = 1. / rday 89 r1_ryyss = 1. / ryyss 90 IF( ln_check_mass .AND. lwp) & 91 & CALL ctl_opn( numnit, 'nitrogen.budget', 'REPLACE', 'FORMATTED', 'SEQUENTIAL', -1, 6, .FALSE., narea ) 92 ENDIF 81 IF( kt == nittrc000 .AND. knt == 1 ) r1_rday = 1. / rday 93 82 ! 94 83 ! Allocate temporary workspace 95 CALL wrk_alloc( jpi, jpj, zdenit2d, zwork1, zwork2, zwork3, z work4, zbureff )84 CALL wrk_alloc( jpi, jpj, zdenit2d, zwork1, zwork2, zwork3, zbureff ) 96 85 CALL wrk_alloc( jpi, jpj, zwsbio3, zwsbio4, zwscal ) 97 CALL wrk_alloc( jpi, jpj, jpk, z nitrpot, zsoufer )86 CALL wrk_alloc( jpi, jpj, jpk, zsoufer ) 98 87 99 88 zdenit2d(:,:) = 0.e0 100 89 zbureff (:,:) = 0.e0 90 zwork1 (:,:) = 0.e0 91 zwork2 (:,:) = 0.e0 92 zwork3 (:,:) = 0.e0 101 93 102 94 ! Iron input/uptake due to sea ice : Crude parameterization based on Lancelot et al. … … 110 102 zdep = rfact2 / fse3t(ji,jj,1) 111 103 zwflux = fmmflx(ji,jj) / 1000._wp 112 zfminus = MIN( 0._wp, -zwflux ) * tr n(ji,jj,1,jpfer) * zdep104 zfminus = MIN( 0._wp, -zwflux ) * trb(ji,jj,1,jpfer) * zdep 113 105 zfplus = MAX( 0._wp, -zwflux ) * icefeinput * zdep 114 106 zironice(ji,jj) = zfplus + zfminus … … 116 108 END DO 117 109 ! 118 tr n(:,:,1,jpfer) = trn(:,:,1,jpfer) + zironice(:,:)119 ! 120 IF( l n_diatrc .AND. lk_iomput .AND. jnt == nrdttrc) &110 tra(:,:,1,jpfer) = tra(:,:,1,jpfer) + zironice(:,:) 111 ! 112 IF( lk_iomput .AND. knt == nrdttrc .AND. iom_use( "Ironice" ) ) & 121 113 & CALL iom_put( "Ironice", zironice(:,:) * 1.e+3 * rfact2r * fse3t(:,:,1) * tmask(:,:,1) ) ! iron flux from ice 114 ! 122 115 CALL wrk_dealloc( jpi, jpj, zironice ) 123 116 ! … … 132 125 ! ! Iron and Si deposition at the surface 133 126 IF( ln_solub ) THEN 134 zirondep(:,:,1) = solub(:,:) * dust(:,:) * mfrac * rfact2 / fse3t(:,:,1) / ( 55.85 * rmtss )+ 3.e-10 * r1_ryyss127 zirondep(:,:,1) = solub(:,:) * dust(:,:) * mfrac * rfact2 / fse3t(:,:,1) / 55.85 + 3.e-10 * r1_ryyss 135 128 ELSE 136 zirondep(:,:,1) = dustsolub * dust(:,:) * mfrac * rfact2 / fse3t(:,:,1) / ( 55.85 * rmtss )+ 3.e-10 * r1_ryyss129 zirondep(:,:,1) = dustsolub * dust(:,:) * mfrac * rfact2 / fse3t(:,:,1) / 55.85 + 3.e-10 * r1_ryyss 137 130 ENDIF 138 zsidep(:,:) = 8.8 * 0.075 * dust(:,:) * mfrac * rfact2 / fse3t(:,:,1) / ( 28.1 * rmtss )139 zpdep (:,:) = 0.1 * 0.021 * dust(:,:) * mfrac * rfact2 / fse3t(:,:,1) / ( 31. * rmtss )/ po4r131 zsidep(:,:) = 8.8 * 0.075 * dust(:,:) * mfrac * rfact2 / fse3t(:,:,1) / 28.1 132 zpdep (:,:) = 0.1 * 0.021 * dust(:,:) * mfrac * rfact2 / fse3t(:,:,1) / 31. / po4r 140 133 ! ! Iron solubilization of particles in the water column 141 134 ! ! dust in kg/m2/s ---> 1/55.85 to put in mol/Fe ; wdust in m/j … … 145 138 END DO 146 139 ! ! Iron solubilization of particles in the water column 147 trn(:,:,1,jppo4) = trn(:,:,1,jppo4) + zpdep (:,:) 148 trn(:,:,1,jpsil) = trn(:,:,1,jpsil) + zsidep (:,:) 149 trn(:,:,:,jpfer) = trn(:,:,:,jpfer) + zirondep(:,:,:) 150 ! 151 IF( ln_diatrc ) THEN 152 zfact = 1.e+3 * rfact2r 153 IF( lk_iomput ) THEN 154 IF( jnt == nrdttrc ) THEN 155 CALL iom_put( "Irondep", zirondep(:,:,1) * zfact * fse3t(:,:,1) * tmask(:,:,1) ) ! surface downward dust depo of iron 156 CALL iom_put( "pdust" , dust(:,:) / ( wdust * rday ) * tmask(:,:,1) ) ! dust concentration at surface 157 ENDIF 158 ELSE 159 trc2d(:,:,jp_pcs0_2d + 11) = zirondep(:,:,1) * zfact * fse3t(:,:,1) * tmask(:,:,1) 140 tra(:,:,1,jppo4) = tra(:,:,1,jppo4) + zpdep (:,:) 141 tra(:,:,1,jpsil) = tra(:,:,1,jpsil) + zsidep (:,:) 142 tra(:,:,:,jpfer) = tra(:,:,:,jpfer) + zirondep(:,:,:) 143 ! 144 IF( lk_iomput ) THEN 145 IF( knt == nrdttrc ) THEN 146 IF( iom_use( "Irondep" ) ) & 147 & CALL iom_put( "Irondep", zirondep(:,:,1) * 1.e+3 * rfact2r * fse3t(:,:,1) * tmask(:,:,1) ) ! surface downward dust depo of iron 148 IF( iom_use( "pdust" ) ) & 149 & CALL iom_put( "pdust" , dust(:,:) / ( wdust * rday ) * tmask(:,:,1) ) ! dust concentration at surface 160 150 ENDIF 151 ELSE 152 IF( ln_diatrc ) & 153 & trc2d(:,:,jp_pcs0_2d + 11) = zirondep(:,:,1) * 1.e+3 * rfact2r * fse3t(:,:,1) * tmask(:,:,1) 161 154 ENDIF 162 155 CALL wrk_dealloc( jpi, jpj, zpdep, zsidep ) … … 168 161 ! ---------------------------------------------------------- 169 162 IF( ln_river ) THEN 170 trn(:,:,1,jppo4) = trn(:,:,1,jppo4) + rivdip(:,:) * rfact2 171 trn(:,:,1,jpno3) = trn(:,:,1,jpno3) + rivdin(:,:) * rfact2 172 trn(:,:,1,jpfer) = trn(:,:,1,jpfer) + rivdic(:,:) * 5.e-5 * rfact2 173 trn(:,:,1,jpsil) = trn(:,:,1,jpsil) + rivdsi(:,:) * rfact2 174 trn(:,:,1,jpdic) = trn(:,:,1,jpdic) + rivdic(:,:) * rfact2 175 trn(:,:,1,jptal) = trn(:,:,1,jptal) + ( rivalk(:,:) - rno3 * rivdin(:,:) ) * rfact2 163 DO jj = 1, jpj 164 DO ji = 1, jpi 165 DO jk = 1, nk_rnf(ji,jj) 166 tra(ji,jj,jk,jppo4) = tra(ji,jj,jk,jppo4) + rivdip(ji,jj) * rfact2 167 tra(ji,jj,jk,jpno3) = tra(ji,jj,jk,jpno3) + rivdin(ji,jj) * rfact2 168 tra(ji,jj,jk,jpfer) = tra(ji,jj,jk,jpfer) + rivdic(ji,jj) * 5.e-5 * rfact2 169 tra(ji,jj,jk,jpsil) = tra(ji,jj,jk,jpsil) + rivdsi(ji,jj) * rfact2 170 tra(ji,jj,jk,jpdic) = tra(ji,jj,jk,jpdic) + rivdic(ji,jj) * rfact2 171 tra(ji,jj,jk,jptal) = tra(ji,jj,jk,jptal) + ( rivalk(ji,jj) - rno3 * rivdin(ji,jj) ) * rfact2 172 ENDDO 173 ENDDO 174 ENDDO 176 175 ENDIF 177 176 … … 179 178 ! ---------------------------------------------------------- 180 179 IF( ln_ndepo ) THEN 181 tr n(:,:,1,jpno3) = trn(:,:,1,jpno3) + nitdep(:,:) * rfact2182 tr n(:,:,1,jptal) = trn(:,:,1,jptal) - rno3 * nitdep(:,:) * rfact2180 tra(:,:,1,jpno3) = tra(:,:,1,jpno3) + nitdep(:,:) * rfact2 181 tra(:,:,1,jptal) = tra(:,:,1,jptal) - rno3 * nitdep(:,:) * rfact2 183 182 ENDIF 184 183 … … 186 185 ! ------------------------------------------------------ 187 186 IF( ln_ironsed ) THEN 188 tr n(:,:,:,jpfer) = trn(:,:,:,jpfer) + ironsed(:,:,:) * rfact2187 tra(:,:,:,jpfer) = tra(:,:,:,jpfer) + ironsed(:,:,:) * rfact2 189 188 ! 190 IF( l n_diatrc .AND. lk_iomput .AND. jnt == nrdttrc) &189 IF( lk_iomput .AND. knt == nrdttrc .AND. iom_use( "Ironsed" ) ) & 191 190 & CALL iom_put( "Ironsed", ironsed(:,:,:) * 1.e+3 * tmask(:,:,:) ) ! iron inputs from sediments 192 191 ENDIF … … 195 194 ! ------------------------------------------------------ 196 195 IF( ln_hydrofe ) THEN 197 tr n(:,:,:,jpfer) = trn(:,:,:,jpfer) + hydrofe(:,:,:) * rfact2196 tra(:,:,:,jpfer) = tra(:,:,:,jpfer) + hydrofe(:,:,:) * rfact2 198 197 ! 199 IF( l n_diatrc .AND. lk_iomput .AND. jnt == nrdttrc) &198 IF( lk_iomput .AND. knt == nrdttrc .AND. iom_use( "HYDR" ) ) & 200 199 & CALL iom_put( "HYDR", hydrofe(:,:,:) * 1.e+3 * tmask(:,:,:) ) ! hydrothermal iron input 201 200 ENDIF 202 203 201 204 202 ! OA: Warning, the following part is necessary, especially with Kriest … … 224 222 ikt = mbkt(ji,jj) 225 223 # if defined key_kriest 226 zflx = tr n(ji,jj,ikt,jppoc) * zwsbio3(ji,jj) * 1E3 * 1E6 / 1E4224 zflx = trb(ji,jj,ikt,jppoc) * zwsbio3(ji,jj) * 1E3 * 1E6 / 1E4 227 225 # else 228 zflx = ( tr n(ji,jj,ikt,jpgoc) * zwsbio4(ji,jj) &229 & + tr n(ji,jj,ikt,jppoc) * zwsbio3(ji,jj) ) * 1E3 * 1E6 / 1E4226 zflx = ( trb(ji,jj,ikt,jpgoc) * zwsbio4(ji,jj) & 227 & + trb(ji,jj,ikt,jppoc) * zwsbio3(ji,jj) ) * 1E3 * 1E6 / 1E4 230 228 #endif 231 229 zflx = LOG10( MAX( 1E-3, zflx ) ) 232 zo2 = LOG10( MAX( 10. , tr n(ji,jj,ikt,jpoxy) * 1E6 ) )233 zno3 = LOG10( MAX( 1. , tr n(ji,jj,ikt,jpno3) * 1E6 * rno3 ) )230 zo2 = LOG10( MAX( 10. , trb(ji,jj,ikt,jpoxy) * 1E6 ) ) 231 zno3 = LOG10( MAX( 1. , trb(ji,jj,ikt,jpno3) * 1E6 * rno3 ) ) 234 232 zdep = LOG10( fsdepw(ji,jj,ikt+1) ) 235 233 zdenit2d(ji,jj) = -2.2567 - 1.185 * zflx - 0.221 * zflx**2 - 0.3995 * zno3 * zo2 + 1.25 * zno3 & … … 237 235 zdenit2d(ji,jj) = 10.0**( zdenit2d(ji,jj) ) 238 236 ! 239 zflx = ( tr n(ji,jj,ikt,jpgoc) * zwsbio4(ji,jj) &240 & + tr n(ji,jj,ikt,jppoc) * zwsbio3(ji,jj) ) * 1E6237 zflx = ( trb(ji,jj,ikt,jpgoc) * zwsbio4(ji,jj) & 238 & + trb(ji,jj,ikt,jppoc) * zwsbio3(ji,jj) ) * 1E6 241 239 zbureff(ji,jj) = 0.013 + 0.53 * zflx**2 / ( 7.0 + zflx )**2 242 240 ENDIF … … 250 248 DO jj = 1, jpj 251 249 DO ji = 1, jpi 252 ikt = mbkt(ji,jj) 250 IF( tmask(ji,jj,1) == 1 ) THEN 251 ikt = mbkt(ji,jj) 253 252 # if defined key_kriest 254 zwork1(ji,jj) = trn(ji,jj,ikt,jpgsi) * zwscal (ji,jj)255 zwork2(ji,jj) = trn(ji,jj,ikt,jppoc) * zwsbio3(ji,jj)253 zwork1(ji,jj) = trb(ji,jj,ikt,jpgsi) * zwscal (ji,jj) 254 zwork2(ji,jj) = trb(ji,jj,ikt,jppoc) * zwsbio3(ji,jj) 256 255 # else 257 zwork1(ji,jj) = trn(ji,jj,ikt,jpgsi) * zwsbio4(ji,jj)258 zwork2(ji,jj) = trn(ji,jj,ikt,jpgoc) * zwsbio4(ji,jj) + trn(ji,jj,ikt,jppoc) * zwsbio3(ji,jj)256 zwork1(ji,jj) = trb(ji,jj,ikt,jpgsi) * zwsbio4(ji,jj) 257 zwork2(ji,jj) = trb(ji,jj,ikt,jpgoc) * zwsbio4(ji,jj) + trb(ji,jj,ikt,jppoc) * zwsbio3(ji,jj) 259 258 # endif 260 ! For calcite, burial efficiency is made a function of saturation 261 zfactcal = MIN( excess(ji,jj,ikt), 0.2 ) 262 zfactcal = MIN( 1., 1.3 * ( 0.2 - zfactcal ) / ( 0.4 - zfactcal ) ) 263 zwork3(ji,jj) = trn(ji,jj,ikt,jpcal) * zwscal(ji,jj) * 2.e0 * zfactcal 259 ! For calcite, burial efficiency is made a function of saturation 260 zfactcal = MIN( excess(ji,jj,ikt), 0.2 ) 261 zfactcal = MIN( 1., 1.3 * ( 0.2 - zfactcal ) / ( 0.4 - zfactcal ) ) 262 zwork3(ji,jj) = trb(ji,jj,ikt,jpcal) * zwscal(ji,jj) * 2.e0 * zfactcal 263 ENDIF 264 264 END DO 265 265 END DO … … 279 279 DO ji = 1, jpi 280 280 ikt = mbkt(ji,jj) 281 zdep = xstep / fse3t(ji,jj,ikt) 281 zdep = xstep / fse3t(ji,jj,ikt) 282 282 zws4 = zwsbio4(ji,jj) * zdep 283 283 zwsc = zwscal (ji,jj) * zdep 284 284 # if defined key_kriest 285 zsiloss = tr n(ji,jj,ikt,jpgsi) * zws4285 zsiloss = trb(ji,jj,ikt,jpgsi) * zws4 286 286 # else 287 zsiloss = tr n(ji,jj,ikt,jpgsi) * zwsc287 zsiloss = trb(ji,jj,ikt,jpgsi) * zwsc 288 288 # endif 289 zcaloss = tr n(ji,jj,ikt,jpcal) * zwsc289 zcaloss = trb(ji,jj,ikt,jpcal) * zwsc 290 290 ! 291 tr n(ji,jj,ikt,jpgsi) = trn(ji,jj,ikt,jpgsi) - zsiloss292 tr n(ji,jj,ikt,jpcal) = trn(ji,jj,ikt,jpcal) - zcaloss291 tra(ji,jj,ikt,jpgsi) = tra(ji,jj,ikt,jpgsi) - zsiloss 292 tra(ji,jj,ikt,jpcal) = tra(ji,jj,ikt,jpcal) - zcaloss 293 293 #if ! defined key_sed 294 tr n(ji,jj,ikt,jpsil) = trn(ji,jj,ikt,jpsil) + zsiloss * zrivsil294 tra(ji,jj,ikt,jpsil) = tra(ji,jj,ikt,jpsil) + zsiloss * zrivsil 295 295 zfactcal = MIN( excess(ji,jj,ikt), 0.2 ) 296 296 zfactcal = MIN( 1., 1.3 * ( 0.2 - zfactcal ) / ( 0.4 - zfactcal ) ) 297 297 zrivalk = 1._wp - ( rivalkinput * r1_ryyss ) * zfactcal / ( zsumsedcal + rtrn ) 298 tr n(ji,jj,ikt,jptal) = trn(ji,jj,ikt,jptal) + zcaloss * zrivalk * 2.0299 tr n(ji,jj,ikt,jpdic) = trn(ji,jj,ikt,jpdic) + zcaloss * zrivalk298 tra(ji,jj,ikt,jptal) = tra(ji,jj,ikt,jptal) + zcaloss * zrivalk * 2.0 299 tra(ji,jj,ikt,jpdic) = tra(ji,jj,ikt,jpdic) + zcaloss * zrivalk 300 300 #endif 301 301 END DO … … 304 304 DO jj = 1, jpj 305 305 DO ji = 1, jpi 306 ikt 307 zdep = xstep / fse3t(ji,jj,ikt)306 ikt = mbkt(ji,jj) 307 zdep = xstep / fse3t(ji,jj,ikt) 308 308 zws4 = zwsbio4(ji,jj) * zdep 309 309 zws3 = zwsbio3(ji,jj) * zdep 310 310 zrivno3 = 1. - zbureff(ji,jj) 311 311 # if ! defined key_kriest 312 tr n(ji,jj,ikt,jpgoc) = trn(ji,jj,ikt,jpgoc) - trn(ji,jj,ikt,jpgoc) * zws4313 tr n(ji,jj,ikt,jppoc) = trn(ji,jj,ikt,jppoc) - trn(ji,jj,ikt,jppoc) * zws3314 tr n(ji,jj,ikt,jpbfe) = trn(ji,jj,ikt,jpbfe) - trn(ji,jj,ikt,jpbfe) * zws4315 tr n(ji,jj,ikt,jpsfe) = trn(ji,jj,ikt,jpsfe) - trn(ji,jj,ikt,jpsfe) * zws3316 zwstpoc = trn(ji,jj,ikt,jpgoc) * zws4 + trn(ji,jj,ikt,jppoc) * zws3312 tra(ji,jj,ikt,jpgoc) = tra(ji,jj,ikt,jpgoc) - trb(ji,jj,ikt,jpgoc) * zws4 313 tra(ji,jj,ikt,jppoc) = tra(ji,jj,ikt,jppoc) - trb(ji,jj,ikt,jppoc) * zws3 314 tra(ji,jj,ikt,jpbfe) = tra(ji,jj,ikt,jpbfe) - trb(ji,jj,ikt,jpbfe) * zws4 315 tra(ji,jj,ikt,jpsfe) = tra(ji,jj,ikt,jpsfe) - trb(ji,jj,ikt,jpsfe) * zws3 316 zwstpoc = trb(ji,jj,ikt,jpgoc) * zws4 + trb(ji,jj,ikt,jppoc) * zws3 317 317 # else 318 tr n(ji,jj,ikt,jpnum) = trn(ji,jj,ikt,jpnum) - trn(ji,jj,ikt,jpnum) * zws4319 tr n(ji,jj,ikt,jppoc) = trn(ji,jj,ikt,jppoc) - trn(ji,jj,ikt,jppoc) * zws3320 tr n(ji,jj,ikt,jpsfe) = trn(ji,jj,ikt,jpsfe) - trn(ji,jj,ikt,jpsfe) * zws3321 zwstpoc = tr n(ji,jj,ikt,jppoc) * zws3318 tra(ji,jj,ikt,jpnum) = tra(ji,jj,ikt,jpnum) - trb(ji,jj,ikt,jpnum) * zws4 319 tra(ji,jj,ikt,jppoc) = tra(ji,jj,ikt,jppoc) - trb(ji,jj,ikt,jppoc) * zws3 320 tra(ji,jj,ikt,jpsfe) = tra(ji,jj,ikt,jpsfe) - trb(ji,jj,ikt,jpsfe) * zws3 321 zwstpoc = trb(ji,jj,ikt,jppoc) * zws3 322 322 # endif 323 323 … … 325 325 ! The 0.5 factor in zpdenit and zdenitt is to avoid negative NO3 concentration after both denitrification 326 326 ! in the sediments and just above the sediments. Not very clever, but simpliest option. 327 zpdenit = MIN( 0.5 * ( tr n(ji,jj,ikt,jpno3) - rtrn ) / rdenit, zdenit2d(ji,jj) * zwstpoc * zrivno3 )327 zpdenit = MIN( 0.5 * ( trb(ji,jj,ikt,jpno3) - rtrn ) / rdenit, zdenit2d(ji,jj) * zwstpoc * zrivno3 ) 328 328 z1pdenit = zwstpoc * zrivno3 - zpdenit 329 zolimit = MIN( ( tr n(ji,jj,ikt,jpoxy) - rtrn ) / o2ut, z1pdenit * ( 1.- nitrfac(ji,jj,ikt) ) )330 zdenitt = MIN( 0.5 * ( tr n(ji,jj,ikt,jpno3) - rtrn ) / rdenit, z1pdenit * nitrfac(ji,jj,ikt) )331 tr n(ji,jj,ikt,jpdoc) = trn(ji,jj,ikt,jpdoc) + z1pdenit - zolimit - zdenitt332 tr n(ji,jj,ikt,jppo4) = trn(ji,jj,ikt,jppo4) + zpdenit + zolimit + zdenitt333 tr n(ji,jj,ikt,jpnh4) = trn(ji,jj,ikt,jpnh4) + zpdenit + zolimit + zdenitt334 tr n(ji,jj,ikt,jpno3) = trn(ji,jj,ikt,jpno3) - rdenit * (zpdenit + zdenitt)335 tr n(ji,jj,ikt,jpoxy) = trn(ji,jj,ikt,jpoxy) - zolimit * o2ut336 tr n(ji,jj,ikt,jptal) = trn(ji,jj,ikt,jptal) + rno3 * (zolimit + (1.+rdenit) * (zpdenit + zdenitt) )337 tr n(ji,jj,ikt,jpdic) = trn(ji,jj,ikt,jpdic) + zpdenit + zolimit + zdenitt338 zwork4(ji,jj) = rdenit * zpdenit * fse3t(ji,jj,ikt)329 zolimit = MIN( ( trb(ji,jj,ikt,jpoxy) - rtrn ) / o2ut, z1pdenit * ( 1.- nitrfac(ji,jj,ikt) ) ) 330 zdenitt = MIN( 0.5 * ( trb(ji,jj,ikt,jpno3) - rtrn ) / rdenit, z1pdenit * nitrfac(ji,jj,ikt) ) 331 tra(ji,jj,ikt,jpdoc) = tra(ji,jj,ikt,jpdoc) + z1pdenit - zolimit - zdenitt 332 tra(ji,jj,ikt,jppo4) = tra(ji,jj,ikt,jppo4) + zpdenit + zolimit + zdenitt 333 tra(ji,jj,ikt,jpnh4) = tra(ji,jj,ikt,jpnh4) + zpdenit + zolimit + zdenitt 334 tra(ji,jj,ikt,jpno3) = tra(ji,jj,ikt,jpno3) - rdenit * (zpdenit + zdenitt) 335 tra(ji,jj,ikt,jpoxy) = tra(ji,jj,ikt,jpoxy) - zolimit * o2ut 336 tra(ji,jj,ikt,jptal) = tra(ji,jj,ikt,jptal) + rno3 * (zolimit + (1.+rdenit) * (zpdenit + zdenitt) ) 337 tra(ji,jj,ikt,jpdic) = tra(ji,jj,ikt,jpdic) + zpdenit + zolimit + zdenitt 338 sdenit(ji,jj) = rdenit * zpdenit * fse3t(ji,jj,ikt) 339 339 #endif 340 340 END DO … … 356 356 #endif 357 357 ztrfer = biron(ji,jj,jk) / ( concfediaz + biron(ji,jj,jk) ) 358 ztrpo4 = tr n (ji,jj,jk,jppo4) / ( concnnh4 + trn(ji,jj,jk,jppo4) )359 zlight = ( 1.- EXP( -etot (ji,jj,jk) / diazolight ) )360 znitrpot(ji,jj,jk) = MAX( 0.e0, ( 0.6 * tgfunc(ji,jj,jk) - 2.15 ) * r1_rday ) &358 ztrpo4 = trb (ji,jj,jk,jppo4) / ( concnnh4 + trb (ji,jj,jk,jppo4) ) 359 zlight = ( 1.- EXP( -etot_ndcy(ji,jj,jk) / diazolight ) ) 360 nitrpot(ji,jj,jk) = MAX( 0.e0, ( 0.6 * tgfunc(ji,jj,jk) - 2.15 ) * r1_rday ) & 361 361 & * zfact * MIN( ztrfer, ztrpo4 ) * zlight 362 362 zsoufer(ji,jj,jk) = zlight * 2E-11 / (2E-11 + biron(ji,jj,jk)) … … 370 370 DO jj = 1, jpj 371 371 DO ji = 1, jpi 372 zfact = znitrpot(ji,jj,jk) * nitrfix373 tr n(ji,jj,jk,jpnh4) = trn(ji,jj,jk,jpnh4) + zfact374 tr n(ji,jj,jk,jptal) = trn(ji,jj,jk,jptal) + rno3 * zfact375 tr n(ji,jj,jk,jpoxy) = trn(ji,jj,jk,jpoxy) + o2nit * zfact376 tr n(ji,jj,jk,jppo4) = trn(ji,jj,jk,jppo4) + concdnh4 / ( concdnh4 + trn(ji,jj,jk,jppo4) ) &377 & * 0.002 * tr n(ji,jj,jk,jpdoc) * rfact2 / rday378 tr n(ji,jj,jk,jpfer) = trn(ji,jj,jk,jpfer) + 0.002 * 4E-10 * zsoufer(ji,jj,jk) * rfact2 / rday372 zfact = nitrpot(ji,jj,jk) * nitrfix 373 tra(ji,jj,jk,jpnh4) = tra(ji,jj,jk,jpnh4) + zfact 374 tra(ji,jj,jk,jptal) = tra(ji,jj,jk,jptal) + rno3 * zfact 375 tra(ji,jj,jk,jpoxy) = tra(ji,jj,jk,jpoxy) + o2nit * zfact 376 tra(ji,jj,jk,jppo4) = tra(ji,jj,jk,jppo4) + concdnh4 / ( concdnh4 + trb(ji,jj,jk,jppo4) ) & 377 & * 0.002 * trb(ji,jj,jk,jpdoc) * xstep 378 tra(ji,jj,jk,jpfer) = tra(ji,jj,jk,jpfer) + 0.002 * 4E-10 * zsoufer(ji,jj,jk) * xstep 379 379 END DO 380 380 END DO 381 381 END DO 382 382 383 384 IF( ln_check_mass) THEN385 ! Global budget of N SMS : denitrification in the water column and in the sediment386 ! nitrogen fixation by the diazotrophs387 ! --------------------------------------------------------------------------------388 zrdenittot = glob_sum ( denitr(:,:,:) * rdenit * xnegtr(:,:,:) * cvol(:,:,:) )389 zsdenittot = glob_sum ( zwork4(:,:) * e1e2t(:,:) )390 znitrpottot = glob_sum ( znitrpot(:,:,:) * nitrfix * cvol(:,:,:))391 IF( kt == nitend .AND. jnt == nrdttrc ) THEN392 zfact = 1.e+3 * rfact2r * rno3 * ryyss * 14. / 1e12393 IF(lwp) WRITE(numnit,9100) ndastp, znitrpottot * nitrfix * zfact, zrdenittot * zfact , zsdenittot * zfact383 IF( lk_iomput ) THEN 384 IF( knt == nrdttrc ) THEN 385 zfact = 1.e+3 * rfact2r * rno3 ! conversion from molC/l/kt to molN/m3/s 386 IF( iom_use("Nfix" ) ) CALL iom_put( "Nfix", nitrpot(:,:,:) * nitrfix * zfact * tmask(:,:,:) ) ! nitrogen fixation 387 IF( iom_use("INTNFIX") ) THEN ! nitrogen fixation rate in ocean ( vertically integrated ) 388 zwork1(:,:) = 0. 389 DO jk = 1, jpkm1 390 zwork1(:,:) = zwork1(:,:) + nitrpot(:,:,jk) * nitrfix * zfact * fse3t(:,:,jk) * tmask(:,:,jk) 391 ENDDO 392 CALL iom_put( "INTNFIX" , zwork1 ) 393 ENDIF 394 394 ENDIF 395 ENDIF 396 ! 397 IF( ln_diatrc ) THEN 398 zfact = 1.e+3 * rfact2r 399 IF( lk_iomput ) THEN 400 IF( jnt == nrdttrc ) THEN 401 CALL iom_put( "Nfix" , znitrpot(:,:,:) * nitrfix * rno3 * zfact * tmask(:,:,:) ) ! nitrogen fixation 402 CALL iom_put( "Sdenit", zwork4(:,:) * rno3 * zfact * tmask(:,:,1) ) ! Nitrate reduction in the sediments 403 ENDIF 404 ELSE 405 trc2d(:,:,jp_pcs0_2d + 12) = znitrpot(:,:,1) * nitrfix * zfact * fse3t(:,:,1) * tmask(:,:,1) 406 ENDIF 395 ELSE 396 IF( ln_diatrc ) & 397 & trc2d(:,:,jp_pcs0_2d + 12) = nitrpot(:,:,1) * nitrfix * rno3 * 1.e+3 * rfact2r * fse3t(:,:,1) * tmask(:,:,1) 407 398 ENDIF 408 399 ! … … 410 401 WRITE(charout, fmt="('sed ')") 411 402 CALL prt_ctl_trc_info(charout) 412 CALL prt_ctl_trc(tab4d=tr n, mask=tmask, clinfo=ctrcnm)413 ENDIF 414 ! 415 CALL wrk_dealloc( jpi, jpj, zdenit2d, zwork1, zwork2, zwork3, z work4, zbureff )403 CALL prt_ctl_trc(tab4d=tra, mask=tmask, clinfo=ctrcnm) 404 ENDIF 405 ! 406 CALL wrk_dealloc( jpi, jpj, zdenit2d, zwork1, zwork2, zwork3, zbureff ) 416 407 CALL wrk_dealloc( jpi, jpj, zwsbio3, zwsbio4, zwscal ) 417 CALL wrk_dealloc( jpi, jpj, jpk, z nitrpot, zsoufer )408 CALL wrk_dealloc( jpi, jpj, jpk, zsoufer ) 418 409 ! 419 410 IF( nn_timing == 1 ) CALL timing_stop('p4z_sed') … … 422 413 ! 423 414 END SUBROUTINE p4z_sed 415 416 417 INTEGER FUNCTION p4z_sed_alloc() 418 !!---------------------------------------------------------------------- 419 !! *** ROUTINE p4z_sed_alloc *** 420 !!---------------------------------------------------------------------- 421 ALLOCATE( nitrpot(jpi,jpj,jpk), sdenit(jpi,jpj), STAT=p4z_sed_alloc ) 422 ! 423 IF( p4z_sed_alloc /= 0 ) CALL ctl_warn('p4z_sed_alloc: failed to allocate arrays') 424 ! 425 END FUNCTION p4z_sed_alloc 426 424 427 425 428 #else
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