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Changeset 7178 for branches/CNRS/dev_r6270_PISCES_QUOTA – NEMO

Ignore:
Timestamp:
2016-11-03T16:39:56+01:00 (7 years ago)
Author:
aumont
Message:

adapt the shared config files to new code

Location:
branches/CNRS/dev_r6270_PISCES_QUOTA/NEMOGCM/CONFIG/SHARED
Files:
2 edited

Legend:

Unmodified
Added
Removed
  • branches/CNRS/dev_r6270_PISCES_QUOTA/NEMOGCM/CONFIG/SHARED/field_def.xml

    r6455 r7178  
    808808       <field id="NH4_E3T"      long_name="NH4 * E3T"                                unit="mmol/m2"  > NH4 * e3t </field > 
    809809 
     810       <!-- PISCES with Quota parama --> 
     811       <field id="DON"          long_name="Dissolved organic N Concentration"        unit="mmol/m3" /> 
     812       <field id="DON_E3T"      long_name="DON * E3T"                                unit="mmol/m2"  > DON * e3t </field > 
     813       <field id="DOP"          long_name="Dissolved organic P Concentration"        unit="mmol/m3" /> 
     814       <field id="DOP_E3T"      long_name="DOP * E3T"                                unit="mmol/m2"  > DOP * e3t </field > 
     815       <field id="PON"          long_name="Small PON Concentration"                  unit="mmol/m3" /> 
     816       <field id="PON_E3T"      long_name="PON * E3T"                                unit="mmol/m2"  > PON * e3t </field > 
     817       <field id="POP"          long_name="Small POP Concentration"                  unit="mmol/m3" /> 
     818       <field id="POP_E3T"      long_name="POP * E3T"                                unit="mmol/m2"  > POP * e3t </field > 
     819       <field id="GON"          long_name="Big PON Concentration"                    unit="mmol/m3" /> 
     820       <field id="GON_E3T"      long_name="GON * E3T"                                unit="mmol/m2"  > GON * e3t </field > 
     821       <field id="GOP"          long_name="Big POP Concentration"                    unit="mmol/m3" /> 
     822       <field id="GOP_E3T"      long_name="GOP * E3T"                                unit="mmol/m2"  > GOP * e3t </field > 
     823       <field id="PHYN"         long_name="Nanophytoplankton N biomass"              unit="mmol/m3" /> 
     824       <field id="PHYN_E3T"     long_name="PHYN * E3T"                               unit="mmol/m2"  > PHYN * e3t </field > 
     825       <field id="PHYP"         long_name="Nanophytoplankton P biomass"              unit="mmol/m3" /> 
     826       <field id="PHYP_E3T"     long_name="PHYP * E3T"                               unit="mmol/m2"  > PHYP * e3t </field > 
     827       <field id="DIAN"         long_name="Diatoms N biomass"                        unit="mmol/m3" /> 
     828       <field id="DIAN_E3T"     long_name="DIAN * E3T"                               unit="mmol/m2"  > DIAN * e3t </field > 
     829       <field id="DIAP"         long_name="Diatoms P biomass"                        unit="mmol/m3" /> 
     830       <field id="DIAP_E3T"     long_name="DIAP * E3T"                               unit="mmol/m2"  > DIAP * e3t </field > 
     831       <field id="PIC"          long_name="Picophytoplankton C biomass"              unit="mmol/m3" /> 
     832       <field id="PIC_E3T"      long_name="PIC * E3T"                                unit="mmol/m2"  > PIC * e3t </field > 
     833       <field id="PICN"         long_name="Picophytoplankton N biomass"              unit="mmol/m3" /> 
     834       <field id="PICN_E3T"     long_name="PICN * E3T"                               unit="mmol/m2"  > PICN * e3t </field > 
     835       <field id="PICP"         long_name="Picophytoplankton P biomass"              unit="mmol/m3" /> 
     836       <field id="PICP_E3T"     long_name="PICP * E3T"                               unit="mmol/m2"  > PICP * e3t </field > 
     837       <field id="PFe"          long_name="Picophytoplankton Fe biomass"             unit="mmol/m3" /> 
     838       <field id="PFe_E3T"      long_name="PFe * E3T"                                unit="mmol/m2"  > PFe * e3t </field > 
     839       <field id="PCHL"         long_name="Picophytoplankton Chl biomass"            unit="mg/m3" /> 
     840       <field id="PCHL_E3T"     long_name="PCHL * E3T"                               unit="mmol/m2"  > PCHL * e3t </field > 
     841 
     842       <!-- PISCES with ligand parametisation : variables available with key_ligand --> 
     843       <field id="LGW"     long_name="Weak ligands concentration"                unit="mmol/m3" /> 
     844       <field id="LFe"     long_name="Lithogenic iron concentration"             unit="mmol/m3" /> 
     845 
     846 
    810847       <!-- PISCES with Kriest parametisation : variables available with key_kriest --> 
    811848       <field id="Num"         long_name="Number of organic particles"              unit="1" /> 
     
    835872       <field id="PARDM"       long_name="Daily mean PAR"                          unit="W/m2"       grid_ref="grid_T_3D" /> 
    836873       <field id="PPPHY"       long_name="Primary production of nanophyto"         unit="mol/m3/s"   grid_ref="grid_T_3D" /> 
     874       <field id="PPPHYP"       long_name="Primary production of picophyto"         unit="molC/m3/s"  grid_ref="grid_T_3D" /> 
    837875       <field id="PPPHY2"      long_name="Primary production of diatoms"           unit="mol/m3/s"   grid_ref="grid_T_3D" /> 
    838876       <field id="PPNEWN"      long_name="New Primary production of nanophyto"     unit="mol/m3/s"   grid_ref="grid_T_3D" /> 
     877       <field id="PPNEWP"      long_name="New Primary production of picophyto"     unit="molC/m3/s"  grid_ref="grid_T_3D" /> 
    839878       <field id="PPNEWD"      long_name="New Primary production of diatoms"       unit="mol/m3/s"   grid_ref="grid_T_3D" /> 
    840879       <field id="PBSi"        long_name="Primary production of Si diatoms"        unit="mol/m3/s"   grid_ref="grid_T_3D" /> 
    841880       <field id="PFeN"        long_name="Primary production of nano iron"         unit="mol/m3/s"   grid_ref="grid_T_3D" /> 
     881       <field id="PFeP"        long_name="Primary production of pico iron"         unit="molFe/m3/s" grid_ref="grid_T_3D" /> 
    842882       <field id="PFeD"        long_name="Primary production of diatoms iron"      unit="mol/m3/s"   grid_ref="grid_T_3D" /> 
    843883       <field id="xfracal"     long_name="Calcifying fraction"                     unit="1"          grid_ref="grid_T_3D" /> 
     
    848888       <field id="REMIN"       long_name="Oxic remineralization of OM"             unit="mol/m3/s"   grid_ref="grid_T_3D" /> 
    849889       <field id="DENIT"       long_name="Anoxic remineralization of OM"           unit="mol/m3/s"   grid_ref="grid_T_3D" /> 
     890       <field id="REMINP"       long_name="Oxic remineralization rate of POC"     unit="-/d"  grid_ref="grid_T_3D" /> 
     891       <field id="REMING"       long_name="Oxic remineralization rate of GOC"     unit="-/d"  grid_ref="grid_T_3D" /> 
    850892       <field id="Nfix"        long_name="Nitrogen fixation"                       unit="mol/m3/s"   grid_ref="grid_T_3D" /> 
    851893       <field id="Mumax"       long_name="Maximum growth rate"                     unit="s-1"        grid_ref="grid_T_3D" /> 
    852894       <field id="MuN"         long_name="Realized growth rate for nanophyto"      unit="s-1"        grid_ref="grid_T_3D" /> 
     895       <field id="MuP"         long_name="Realized growth rate for picophyto"      unit="s-1"        grid_ref="grid_T_3D" /> 
    853896       <field id="MuD"         long_name="Realized growth rate for diatomes"       unit="s-1"        grid_ref="grid_T_3D" /> 
     897       <field id="MunetN"      long_name="Net growth rate for nanophyto"           unit="s-1"        grid_ref="grid_T_3D" /> 
     898       <field id="MunetP"      long_name="Net growth rate for picophyto"           unit="s-1"        grid_ref="grid_T_3D" /> 
     899       <field id="MunetD"      long_name="Net growth rate for diatomes"            unit="s-1"        grid_ref="grid_T_3D" /> 
    854900       <field id="LNnut"       long_name="Nutrient limitation term in Nanophyto"   unit=""           grid_ref="grid_T_3D" /> 
     901       <field id="LPnut"       long_name="Nutrient limitation term in Picophyto"   unit="-"          grid_ref="grid_T_3D" /> 
    855902       <field id="LDnut"       long_name="Nutrient limitation term in Diatoms"     unit=""           grid_ref="grid_T_3D" /> 
    856903       <field id="LNFe"        long_name="Iron limitation term in Nanophyto"       unit=""           grid_ref="grid_T_3D" /> 
     904       <field id="LPFe"        long_name="Iron limitation term in Picophyto"       unit="-"          grid_ref="grid_T_3D" /> 
    857905       <field id="LDFe"        long_name="Iron limitation term in Diatoms"         unit=""           grid_ref="grid_T_3D" /> 
    858906       <field id="LNlight"     long_name="Light limitation term in Nanophyto"      unit=""           grid_ref="grid_T_3D" /> 
     907       <field id="LPlight"     long_name="Light limitation term in Picophyto"      unit="-"          grid_ref="grid_T_3D" /> 
    859908       <field id="LDlight"     long_name="Light limitation term in Diatoms"        unit=""           grid_ref="grid_T_3D" /> 
     909       <field id="SIZEN"       long_name="Mean relative size of nanophyto."        unit="-"          grid_ref="grid_T_3D" /> 
     910       <field id="SIZEP"       long_name="Mean relative size of picophyto."        unit="-"          grid_ref="grid_T_3D" /> 
     911       <field id="SIZED"       long_name="Mean relative size of diatoms"           unit="-"          grid_ref="grid_T_3D" /> 
    860912       <field id="Fe2"         long_name="Iron II concentration"                   unit="nmol/m3"    grid_ref="grid_T_3D" /> 
    861913       <field id="Fe3"         long_name="Iron III concentration"                  unit="nmol/m3"    grid_ref="grid_T_3D" /> 
  • branches/CNRS/dev_r6270_PISCES_QUOTA/NEMOGCM/CONFIG/SHARED/namelist_pisces_ref

    r5385 r7178  
    2929!              !              !  (if <0  months)  !   name    !   (logical)  !  (T/F) ! 'monthly' ! filename ! pairing  ! filename      ! 
    3030   sn_patm     = 'presatm'    ,     -1            , 'patm'    ,  .true.      , .true. , 'yearly'  , ''       , ''       , '' 
     31   sn_atmco2   = 'presatmco2_reg' , -1            , 'xco2'    ,  .true.      , .true. , 'yearly'  , 'weights_AIRS_bilinear.nc'       , ''       , '' 
    3132   cn_dir      = './'     !  root directory for the location of the dynamical files 
    3233! 
    3334   ln_presatm  = .false.   ! constant atmopsheric pressure (F) or from a file (T) 
     35   ln_presatmco2= .false.   ! Read spatialized atm co2 files [ppm] if TRUE 
    3436/ 
    3537!''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' 
    3638&nampisbio     !   biological parameters 
    3739!,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 
    38    nrdttrc    =  1        ! time step frequency for biology 
     40   nrdttrc    =  3        ! time step frequency for biology 
    3941   wsbio      =  2.       ! POC sinking speed 
    40    xkmort     =  2.E-7    ! half saturation constant for mortality 
     42   xkmort     =  1.E-7    ! half saturation constant for mortality 
    4143   ferat3     =  10.E-6   ! Fe/C in zooplankton  
    42    wsbio2     =  30.      ! Big particles sinking speed 
     44   wsbio2     =  50.      ! Big particles sinking speed 
     45   wsbio2max  =  50.      ! Big particles maximum sinking speed 
     46   wsbio2scale=  5000.    ! Big particles length scale of sinking 
    4347   niter1max  =  1        ! Maximum number of iterations for POC 
    44    niter2max  =  1        ! Maximum number of iterations for GOC 
     48   niter2max  =  2        ! Maximum number of iterations for GOC 
     49   wfep       =  0.2      ! FeP sinking speed 
     50   ldocp      =  1.E-5    ! Phyto ligand production per unit doc 
     51   ldocz      =  1.E-5    ! Zoo ligand production per unit doc 
     52   lthet      =  0.5      ! Proportional loss of ligands due to Fe uptake 
    4553/ 
    4654!''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' 
     
    149157   ln_fechem =  .false.   ! complex iron chemistry ( T/F ) 
    150158   ln_ligvar =  .false.   ! variable ligand concentration 
     159   ln_fecolloid = .false. ! variable colloidal fraction 
    151160   xlam1     =  0.005     ! scavenging rate of Iron 
    152161   xlamdust  =  150.0     ! Scavenging rate of dust 
    153162   ligand    =  0.6E-9    ! Ligands concentration  
     163   kfep      =  0.        ! Nanoparticle formation rate constant 
    154164 
    155165!''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' 
     
    157167!,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 
    158168   xremik    =  0.3       ! remineralization rate of DOC 
    159    xremip    =  0.025     ! remineralisation rate of POC 
    160169   nitrif    =  0.05      ! NH4 nitrification rate 
    161170   xsirem    =  0.003     ! remineralization rate of Si 
     
    163172   xsilab    =  0.5       ! Fraction of labile biogenic silica 
    164173   oxymin    =  1.E-6     ! Half-saturation constant for anoxia 
     174   oxymin2   =  6.E-6     ! Minimum O2 concentration for oxic remin. 
     175   feratb    =  10.E-6    ! Fe/C quota in bacteria 
     176   xkferb    =  2.5E-10    ! Half-saturation constant for bacteria Fe/C 
     177/ 
     178!''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' 
     179&nampispoc     !   parameters for organic particles 
     180!,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 
     181   xremip    =  0.035     ! remineralisation rate of PON 
     182   jcpoc     =  15         ! Number of lability classes 
     183   rshape    =  1.0       ! Shape of the gamma function 
    165184/ 
    166185!''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' 
     
    205224   concfediaz  =  1.e-10   ! Diazotrophs half-saturation Cste for Iron 
    206225   hratio      =  1.e+7    ! Fe to 3He ratio assumed for vent iron supply  
     226   fep_rats    =  1.       ! Fep/Fer ratio from sed sources 
     227   fep_rath    =  1.       ! Fep/Fer ratio from sed hydro sources 
     228/ 
     229!''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' 
     230&nampislig      !  Namelist parameters for ligands, nampislig 
     231!,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 
     232   rfep        =  0.001    ! Dissolution rate of FeP 
     233   rlgw        =  1.       ! Lifetime (years) of weak ligands 
     234   rlig        =  1.E-4    ! Remin ligand production per unit C 
     235   prlgw       =  1.E-4    ! Photolysis of weak ligand 
     236   rlgs        =  1000.    ! Lifetime (years) of strong ligands 
    207237/ 
    208238!''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' 
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