Changeset 7198
- Timestamp:
- 2016-11-04T18:58:24+01:00 (7 years ago)
- Location:
- branches/2016/dev_r7012_ROBUST5_CNRS/NEMOGCM
- Files:
-
- 14 edited
-
CONFIG/GYRE_PISCES/EXP00/namelist_top_cfg (modified) (1 diff)
-
CONFIG/ORCA2_LIM3_TRC/EXP00/namelist_top_cfg (modified) (1 diff)
-
CONFIG/ORCA2_LIM_PISCES/EXP00/namelist_top_cfg (modified) (1 diff)
-
CONFIG/ORCA2_OFF_PISCES/EXP00/namelist_top_cfg (modified) (1 diff)
-
CONFIG/SHARED/namelist_top_ref (modified) (3 diffs)
-
NEMO/TOP_SRC/MY_TRC/trcsms_my_trc.F90 (modified) (2 diffs)
-
NEMO/TOP_SRC/oce_trc.F90 (modified) (2 diffs)
-
NEMO/TOP_SRC/par_trc.F90 (modified) (2 diffs)
-
NEMO/TOP_SRC/trc.F90 (modified) (5 diffs)
-
NEMO/TOP_SRC/trcbc.F90 (modified) (22 diffs)
-
NEMO/TOP_SRC/trcdta.F90 (modified) (17 diffs)
-
NEMO/TOP_SRC/trcini.F90 (modified) (3 diffs)
-
NEMO/TOP_SRC/trcnam.F90 (modified) (4 diffs)
-
SETTE/sette.sh (modified) (8 diffs)
Legend:
- Unmodified
- Added
- Removed
-
branches/2016/dev_r7012_ROBUST5_CNRS/NEMOGCM/CONFIG/GYRE_PISCES/EXP00/namelist_top_cfg
r7068 r7198 9 9 &namtrc ! tracers definition 10 10 !----------------------------------------------------------------------- 11 jp tra= 611 jp_bgc = 6 12 12 ! 13 13 ln_pisces = .true. -
branches/2016/dev_r7012_ROBUST5_CNRS/NEMOGCM/CONFIG/ORCA2_LIM3_TRC/EXP00/namelist_top_cfg
r7124 r7198 16 16 &namtrc ! tracers definition 17 17 !----------------------------------------------------------------------- 18 jp tra= 0 ! Number of passive tracers of the BGC model18 jp_bgc = 0 ! Number of passive tracers of the BGC model 19 19 ! 20 20 ln_pisces = .false. ! Run PISCES BGC model -
branches/2016/dev_r7012_ROBUST5_CNRS/NEMOGCM/CONFIG/ORCA2_LIM_PISCES/EXP00/namelist_top_cfg
r7068 r7198 10 10 &namtrc ! tracers definition 11 11 !----------------------------------------------------------------------- 12 jp tra= 2412 jp_bgc = 24 13 13 ! 14 14 ln_pisces = .true. -
branches/2016/dev_r7012_ROBUST5_CNRS/NEMOGCM/CONFIG/ORCA2_OFF_PISCES/EXP00/namelist_top_cfg
r7174 r7198 10 10 &namtrc ! tracers definition 11 11 !----------------------------------------------------------------------- 12 jp tra= 2412 jp_bgc = 24 13 13 ! 14 14 ln_pisces = .true. -
branches/2016/dev_r7012_ROBUST5_CNRS/NEMOGCM/CONFIG/SHARED/namelist_top_ref
r7103 r7198 26 26 &namtrc ! tracers definition 27 27 !----------------------------------------------------------------------- 28 jp tra= 0 ! Number of passive tracers of the BGC model28 jp_bgc = 0 ! Number of passive tracers of the BGC model 29 29 ! 30 30 ln_pisces = .false. ! Run PISCES BGC model … … 38 38 ln_trcdmp = .false. ! add a damping termn (T) or not (F) 39 39 ln_trcdmp_clo = .false. ! damping term (T) or not (F) on closed seas 40 ! 41 jp_dia3d = 0 ! Number of 3D diagnostic variables 42 jp_dia2d = 0 ! Number of 2D diagnostic variables 40 43 ! ! ! ! ! ! 41 44 ! ! name ! title of the field ! units ! initial data from file or not ! … … 136 139 cn_dir_cbc = './' ! root directory for the location of COASTAL data files 137 140 cn_dir_obc = './' ! root directory for the location of OPEN data files 141 ln_rnf_ctl = .false. ! Remove runoff dilution on tracers with absent river load 142 rn_bc_time = 86400. ! Time scaling factor for SBC and CBC data (seconds in a day) 138 143 / 139 144 !---------------------------------------------------------------------- -
branches/2016/dev_r7012_ROBUST5_CNRS/NEMOGCM/NEMO/TOP_SRC/MY_TRC/trcsms_my_trc.F90
r7097 r7198 15 15 USE trd_oce 16 16 USE trdtrc 17 USE trcbc, only : trc_bc _read17 USE trcbc, only : trc_bc 18 18 19 19 IMPLICIT NONE … … 54 54 IF( l_trdtrc ) CALL wrk_alloc( jpi, jpj, jpk, ztrmyt ) 55 55 56 CALL trc_bc _read( kt ) ! tracers: surface and lateral Boundary Conditions56 CALL trc_bc ( kt ) ! tracers: surface and lateral Boundary Conditions 57 57 58 58 ! add here the call to BGC model -
branches/2016/dev_r7012_ROBUST5_CNRS/NEMOGCM/NEMO/TOP_SRC/oce_trc.F90
r7162 r7198 64 64 USE sbc_oce , ONLY : fmmflx => fmmflx !: freshwater budget: volume flux [Kg/m2/s] 65 65 USE sbc_oce , ONLY : rnf => rnf !: river runoff [Kg/m2/s] 66 USE sbc_oce , ONLY : rnf_b => rnf_b !: river runoff at previus step [Kg/m2/s] 66 67 USE sbc_oce , ONLY : ln_dm2dc => ln_dm2dc !: Diurnal Cycle 67 68 USE sbc_oce , ONLY : ln_cpl => ln_cpl !: ocean-atmosphere coupled formulation … … 78 79 USE sbcrnf , ONLY : h_rnf => h_rnf !: river runoff [Kg/m2/s] 79 80 USE sbcrnf , ONLY : nk_rnf => nk_rnf !: depth of runoff in model level 81 USE sbcrnf , ONLY : rn_rfact => rn_rfact !: multiplicative factor for runoff 80 82 81 83 USE trc_oce -
branches/2016/dev_r7012_ROBUST5_CNRS/NEMOGCM/NEMO/TOP_SRC/par_trc.F90
r7068 r7198 21 21 INTEGER, PUBLIC, PARAMETER :: jpmaxtrc = 100 ! Maximum number of tracers 22 22 23 INTEGER, PUBLIC :: jptra ! Total number oftracers23 INTEGER, PUBLIC :: jptra !: Total number of passive tracers 24 24 INTEGER, PUBLIC :: jp_pisces !: number of passive tracers in PISCES model 25 25 INTEGER, PUBLIC :: jp_cfc !: number of CFC passive tracers 26 26 INTEGER, PUBLIC :: jp_my_trc !: number of passive tracers in MY_TRC model 27 INTEGER, PUBLIC :: jp_bgc !: number of passive tracers for the BGC model 28 29 INTEGER, PUBLIC :: jp_dia3d !: number of 3D diagnostic variables 30 INTEGER, PUBLIC :: jp_dia2d !: number of 2D diagnostic variables 27 31 28 32 LOGICAL, PUBLIC :: ln_pisces !: PISCES flag … … 34 38 LOGICAL, PUBLIC :: ln_my_trc !: MY_TRC flag 35 39 36 37 INTEGER, PUBLIC :: jp_bgc !: number of passive tracers for the BGC model38 39 40 REAL(wp), PUBLIC :: rtrn = 0.5 * EPSILON( 1.e0 ) !: truncation value 40 41 -
branches/2016/dev_r7012_ROBUST5_CNRS/NEMOGCM/NEMO/TOP_SRC/trc.F90
r7162 r7198 72 72 REAL(wp) , PUBLIC :: rdttrc !: passive tracer time step 73 73 REAL(wp) , PUBLIC :: r2dttrc !: = 2*rdttrc except at nit000 (=rdttrc) if neuler=0 74 LOGICAL , PUBLIC :: ln_top_euler !: boolean term for euler integration74 LOGICAL , PUBLIC :: ln_top_euler !: boolean term for euler integration 75 75 LOGICAL , PUBLIC :: ln_trcdta !: Read inputs data from files 76 76 LOGICAL , PUBLIC :: ln_trcdmp !: internal damping flag 77 77 LOGICAL , PUBLIC :: ln_trcdmp_clo !: internal damping flag on closed seas 78 INTEGER , PUBLIC :: nittrc000 78 INTEGER , PUBLIC :: nittrc000 !: first time step of passive tracers model 79 79 LOGICAL , PUBLIC :: l_trcdm2dc !: Diurnal cycle for TOP 80 80 … … 114 114 END TYPE DIAG 115 115 116 REAL(wp), PUBLIC, ALLOCATABLE, SAVE, DIMENSION(:,:,:,:) :: trc3d !: 3D diagnostics for tracers 117 REAL(wp), PUBLIC, ALLOCATABLE, SAVE, DIMENSION(:,:,:,:) :: trc2d !: 2D diagnostics for tracers 118 116 119 !! information for inputs 117 120 !! -------------------------------------------------- … … 120 123 LOGICAL , PUBLIC, ALLOCATABLE, SAVE, DIMENSION(:) :: ln_trc_sbc !: Use surface boundary condition data 121 124 LOGICAL , PUBLIC, ALLOCATABLE, SAVE, DIMENSION(:) :: ln_trc_cbc !: Use coastal boundary condition data 125 LOGICAL , PUBLIC :: ln_rnf_ctl !: remove runoff dilution on tracers 126 REAL(wp), PUBLIC :: rn_bc_time !: Time scaling factor for SBC and CBC data (seconds in a day) 122 127 123 128 … … 192 197 USE lib_mpp, ONLY: ctl_warn 193 198 !!------------------------------------------------------------------- 199 INTEGER :: ierr(3) 200 !!------------------------------------------------------------------- 201 ierr(:) = 0 194 202 ! 195 203 ALLOCATE( trn(jpi,jpj,jpk,jptra), trb(jpi,jpj,jpk,jptra), tra(jpi,jpj,jpk,jptra), & … … 207 215 & trcdta_bdy(jptra,nb_bdy) , & 208 216 #endif 209 & STAT = trc_alloc ) 210 217 & STAT = ierr(1) ) 218 ! 219 IF (jp_dia3d > 0 ) ALLOCATE( trc3d(jpi,jpj,jpk,jp_dia3d), STAT = ierr(2) ) 220 ! 221 IF (jp_dia2d > 0 ) ALLOCATE( trc2d(jpi,jpj,jpk,jp_dia2d), STAT = ierr(3) ) 222 ! 223 trc_alloc = MAXVAL( ierr ) 211 224 IF( trc_alloc /= 0 ) CALL ctl_warn('trc_alloc: failed to allocate arrays') 212 225 ! -
branches/2016/dev_r7012_ROBUST5_CNRS/NEMOGCM/NEMO/TOP_SRC/trcbc.F90
r6140 r7198 4 4 !! TOP : module for passive tracer boundary conditions 5 5 !!===================================================================== 6 !! History : 3.5 ! 2014-04 (M. Vichi, T. Lovato) Original 7 !! 3.6 ! 2015-03 (T . Lovato) Revision and BDY support 6 !! History : 3.5 ! 2014 (M. Vichi, T. Lovato) Original 7 !! 3.6 ! 2015 (T . Lovato) Revision and BDY support 8 !! 4.0 ! 2016 (T . Lovato) Include application of sbc and cbc 8 9 !!---------------------------------------------------------------------- 9 10 #if defined key_top … … 11 12 !! 'key_top' TOP model 12 13 !!---------------------------------------------------------------------- 13 !! trc_bc : read and time interpolatedtracer Boundary Conditions14 !! trc_bc : Apply tracer Boundary Conditions 14 15 !!---------------------------------------------------------------------- 15 16 USE par_trc ! passive tracers parameters … … 26 27 PRIVATE 27 28 28 PUBLIC trc_bc _init ! called in trcini.F9029 PUBLIC trc_bc_ read ! called in trcstp.F90 or within29 PUBLIC trc_bc ! called in trcstp.F90 or within TOP modules 30 PUBLIC trc_bc_ini ! called in trcini.F90 30 31 31 32 INTEGER , SAVE, PUBLIC :: nb_trcobc ! number of tracers with open BC … … 43 44 TYPE(MAP_POINTER), ALLOCATABLE, DIMENSION(:) :: nbmap_ptr ! array of pointers to nbmap 44 45 45 !!---------------------------------------------------------------------- 46 !! NEMO/OPA 3.6 , NEMO Consortium (2015) 46 !! * Substitutions 47 # include "vectopt_loop_substitute.h90" 48 !!---------------------------------------------------------------------- 49 !! NEMO/TOP 4.0 , NEMO Consortium (2016) 47 50 !! $Id$ 48 51 !! Software governed by the CeCILL licence (NEMOGCM/NEMO_CeCILL.txt) … … 50 53 CONTAINS 51 54 52 SUBROUTINE trc_bc_ini t( ntrc )55 SUBROUTINE trc_bc_ini( ntrc ) 53 56 !!---------------------------------------------------------------------- 54 !! *** ROUTINE trc_bc_ini t***57 !! *** ROUTINE trc_bc_ini *** 55 58 !! 56 59 !! ** Purpose : initialisation of passive tracer BC data … … 77 80 REAL(wp) , DIMENSION(jpmaxtrc) :: rn_trcfac ! multiplicative factor for tracer values 78 81 !! 79 NAMELIST/namtrc_bc/ cn_dir_sbc, cn_dir_cbc, cn_dir_obc, sn_trcobc, rn_trofac, sn_trcsbc, rn_trsfac, sn_trccbc, rn_trcfac 82 NAMELIST/namtrc_bc/ cn_dir_obc, sn_trcobc, rn_trofac, cn_dir_sbc, sn_trcsbc, rn_trsfac, & 83 & cn_dir_cbc, sn_trccbc, rn_trcfac, ln_rnf_ctl, rn_bc_time 80 84 #if defined key_bdy 81 85 NAMELIST/namtrc_bdy/ cn_trc_dflt, cn_trc, nn_trcdmp_bdy 82 86 #endif 83 87 !!---------------------------------------------------------------------- 84 IF( nn_timing == 1 ) CALL timing_start('trc_bc_ini t')88 IF( nn_timing == 1 ) CALL timing_start('trc_bc_ini') 85 89 ! 86 90 IF( lwp ) THEN 87 91 WRITE(numout,*) ' ' 88 WRITE(numout,*) 'trc_bc_ini t: Tracers Boundary Conditions (BC)'92 WRITE(numout,*) 'trc_bc_ini : Tracers Boundary Conditions (BC)' 89 93 WRITE(numout,*) '~~~~~~~~~~~ ' 90 94 ENDIF … … 93 97 ALLOCATE( slf_i(ntrc), STAT=ierr0 ) 94 98 IF( ierr0 > 0 ) THEN 95 CALL ctl_stop( 'trc_bc_ini t: unable to allocate local slf_i' ) ; RETURN99 CALL ctl_stop( 'trc_bc_ini: unable to allocate local slf_i' ) ; RETURN 96 100 ENDIF 97 101 … … 99 103 ALLOCATE( n_trc_indobc(ntrc), STAT=ierr0 ) 100 104 IF( ierr0 > 0 ) THEN 101 CALL ctl_stop( 'trc_bc_ini t: unable to allocate n_trc_indobc' ) ; RETURN105 CALL ctl_stop( 'trc_bc_ini: unable to allocate n_trc_indobc' ) ; RETURN 102 106 ENDIF 103 107 nb_trcobc = 0 … … 106 110 ALLOCATE( n_trc_indsbc(ntrc), STAT=ierr0 ) 107 111 IF( ierr0 > 0 ) THEN 108 CALL ctl_stop( 'trc_bc_ini t: unable to allocate n_trc_indsbc' ) ; RETURN112 CALL ctl_stop( 'trc_bc_ini: unable to allocate n_trc_indsbc' ) ; RETURN 109 113 ENDIF 110 114 nb_trcsbc = 0 … … 113 117 ALLOCATE( n_trc_indcbc(ntrc), STAT=ierr0 ) 114 118 IF( ierr0 > 0 ) THEN 115 CALL ctl_stop( 'trc_bc_ini t: unable to allocate n_trc_indcbc' ) ; RETURN119 CALL ctl_stop( 'trc_bc_ini: unable to allocate n_trc_indcbc' ) ; RETURN 116 120 ENDIF 117 121 nb_trccbc = 0 … … 140 144 DO jn = 1, ntrc 141 145 DO ib = 1, nb_bdy 142 ! Set type of obc in BDY data structure ( around here we may plug user override of obc type from nml)146 ! Set type of obc in BDY data structure (TL: around here we may plug user override of obc type from nml) 143 147 IF ( ln_trc_obc(jn) ) THEN 144 148 trcdta_bdy(jn,ib)%cn_obc = TRIM( cn_trc(ib) ) … … 195 199 ENDIF 196 200 WRITE(numout,'(2a)') ' COASTAL BC data repository : ', TRIM(cn_dir_cbc) 197 201 IF ( .NOT. ln_rnf ) ln_rnf_ctl = .FALSE. 202 IF ( ln_rnf_ctl ) WRITE(numout,'(a)') ' -> Remove runoff dilution effect on tracers with absent river load (ln_rnf_ctl = .TRUE.)' 198 203 WRITE(numout,*) ' ' 199 204 WRITE(numout,'(a,i3)') ' Total tracers to be initialized with OPEN BCs data:', nb_trcobc … … 230 235 ALLOCATE ( sf_trcobc(nb_trcobc), rf_trofac(nb_trcobc), nbmap_ptr(nb_trcobc), STAT=ierr1 ) 231 236 IF( ierr1 > 0 ) THEN 232 CALL ctl_stop( 'trc_bc_ini t: unable to allocate sf_trcobc structure' ) ; RETURN237 CALL ctl_stop( 'trc_bc_ini: unable to allocate sf_trcobc structure' ) ; RETURN 233 238 ENDIF 234 239 … … 248 253 IF( sn_trcobc(jn)%ln_tint ) ALLOCATE( sf_trcobc(jl)%fdta(nblen,1,jpk,2) , STAT=ierr3 ) 249 254 IF( ierr2 + ierr3 > 0 ) THEN 250 CALL ctl_stop( 'trc_bc_ini t: unable to allocate passive tracer OBC data arrays' ) ; RETURN255 CALL ctl_stop( 'trc_bc_ini : unable to allocate passive tracer OBC data arrays' ) ; RETURN 251 256 ENDIF 252 257 trcdta_bdy(jn,ib)%trc => sf_trcobc(jl)%fnow(:,1,:) … … 270 275 ENDDO 271 276 272 CALL fld_fill( sf_trcobc, slf_i, cn_dir_obc, 'trc_bc_ini t', 'Passive tracer OBC data', 'namtrc_bc' )277 CALL fld_fill( sf_trcobc, slf_i, cn_dir_obc, 'trc_bc_ini', 'Passive tracer OBC data', 'namtrc_bc' ) 273 278 ENDIF 274 279 #endif … … 277 282 ALLOCATE( sf_trcsbc(nb_trcsbc), rf_trsfac(nb_trcsbc), STAT=ierr1 ) 278 283 IF( ierr1 > 0 ) THEN 279 CALL ctl_stop( 'trc_bc_ini t: unable to allocate sf_trcsbc structure' ) ; RETURN284 CALL ctl_stop( 'trc_bc_ini: unable to allocate sf_trcsbc structure' ) ; RETURN 280 285 ENDIF 281 286 ! … … 288 293 IF( sn_trcsbc(jn)%ln_tint ) ALLOCATE( sf_trcsbc(jl)%fdta(jpi,jpj,1,2) , STAT=ierr3 ) 289 294 IF( ierr2 + ierr3 > 0 ) THEN 290 CALL ctl_stop( 'trc_bc_ini t: unable to allocate passive tracer SBC data arrays' ) ; RETURN295 CALL ctl_stop( 'trc_bc_ini : unable to allocate passive tracer SBC data arrays' ) ; RETURN 291 296 ENDIF 292 297 ENDIF … … 294 299 ENDDO 295 300 ! ! fill sf_trcsbc with slf_i and control print 296 CALL fld_fill( sf_trcsbc, slf_i, cn_dir_sbc, 'trc_bc_ini t', 'Passive tracer SBC data', 'namtrc_bc' )301 CALL fld_fill( sf_trcsbc, slf_i, cn_dir_sbc, 'trc_bc_ini', 'Passive tracer SBC data', 'namtrc_bc' ) 297 302 ! 298 303 ENDIF … … 319 324 ENDDO 320 325 ! ! fill sf_trccbc with slf_i and control print 321 CALL fld_fill( sf_trccbc, slf_i, cn_dir_cbc, 'trc_bc_ini t', 'Passive tracer CBC data', 'namtrc_bc' )326 CALL fld_fill( sf_trccbc, slf_i, cn_dir_cbc, 'trc_bc_ini', 'Passive tracer CBC data', 'namtrc_bc' ) 322 327 ! 323 328 ENDIF 324 329 ! 325 330 DEALLOCATE( slf_i ) ! deallocate local field structure 326 IF( nn_timing == 1 ) CALL timing_stop('trc_bc_ini t')327 ! 328 END SUBROUTINE trc_bc_ini t329 330 331 SUBROUTINE trc_bc _read(kt, jit)331 IF( nn_timing == 1 ) CALL timing_stop('trc_bc_ini') 332 ! 333 END SUBROUTINE trc_bc_ini 334 335 336 SUBROUTINE trc_bc(kt, jit) 332 337 !!---------------------------------------------------------------------- 333 !! *** ROUTINE trc_bc _init***338 !! *** ROUTINE trc_bc *** 334 339 !! 335 !! ** Purpose : Read passive tracer Boundary Conditions data340 !! ** Purpose : Apply Boundary Conditions data to tracers 336 341 !! 337 !! ** Method : Read BC inputs and update data structures using fldread 342 !! ** Method : 1) Read BC inputs and update data structures using fldread 343 !! 2) Apply Boundary Conditions to tracers 338 344 !! 339 345 !!---------------------------------------------------------------------- … … 341 347 342 348 !! * Arguments 343 INTEGER, INTENT( in ) :: kt ! ocean time-step index349 INTEGER, INTENT( in ) :: kt ! ocean time-step index 344 350 INTEGER, INTENT( in ), OPTIONAL :: jit ! subcycle time-step index (for timesplitting option) 351 !! 352 INTEGER :: ji, jj, jk, jn, jl ! Loop index 353 REAL(wp) :: zfact, zrnf 345 354 !!--------------------------------------------------------------------- 346 355 ! 347 IF( nn_timing == 1 ) CALL timing_start('trc_bc _read')356 IF( nn_timing == 1 ) CALL timing_start('trc_bc') 348 357 349 358 IF( kt == nit000 .AND. lwp) THEN 350 359 WRITE(numout,*) 351 WRITE(numout,*) 'trc_bc _read: Surface boundary conditions for passive tracers.'360 WRITE(numout,*) 'trc_bc : Surface boundary conditions for passive tracers.' 352 361 WRITE(numout,*) '~~~~~~~~~~~ ' 353 362 ENDIF 354 363 364 ! 1. Update Boundary conditions data 355 365 IF ( PRESENT(jit) ) THEN 356 366 … … 395 405 ENDIF 396 406 397 ! 398 IF( nn_timing == 1 ) CALL timing_stop('trc_bc_read') 399 ! 400 END SUBROUTINE trc_bc_read 407 ! 2. Apply Boundary conditions data 408 ! 409 DO jn = 1 , jptra 410 ! 411 ! Remove river dilution for tracers with absent river load 412 IF ( ln_rnf_ctl .AND. .NOT. ln_trc_cbc(jn) ) THEN 413 DO jj = 2, jpj 414 DO ji = fs_2, fs_jpim1 415 DO jk = 1, nk_rnf(ji,jj) 416 zrnf = (rnf(ji,jj) + rnf_b(ji,jj)) * 0.5_wp * r1_rau0 / h_rnf(ji,jj) 417 tra(ji,jj,jk,jn) = tra(ji,jj,jk,jn) + (trn(ji,jj,jk,jn) * zrnf) 418 ENDDO 419 ENDDO 420 ENDDO 421 ENDIF 422 423 ! OPEN boundary conditions: trcbdy is called in trcnxt ! 424 425 ! SURFACE boundary conditions 426 IF (ln_trc_sbc(jn)) THEN 427 jl = n_trc_indsbc(jn) 428 DO jj = 2, jpj 429 DO ji = fs_2, fs_jpim1 ! vector opt. 430 zfact = 1. / ( e3t_n(ji,jj,1) * rn_bc_time ) 431 tra(ji,jj,1,jn) = tra(ji,jj,1,jn) + rf_trsfac(jl) * sf_trcsbc(jl)%fnow(ji,jj,1) * zfact 432 END DO 433 END DO 434 END IF 435 436 ! COASTAL boundary conditions 437 IF ( ln_rnf .AND. ln_trc_cbc(jn)) THEN 438 jl = n_trc_indcbc(jn) 439 DO jj = 2, jpj 440 DO ji = fs_2, fs_jpim1 ! vector opt. 441 DO jk = 1, nk_rnf(ji,jj) 442 zfact = rn_rfact / ( e1e2t(ji,jj) * h_rnf(ji,jj) * rn_bc_time ) 443 tra(ji,jj,jk,jn) = tra(ji,jj,jk,jn) + rf_trcfac(jl) * sf_trccbc(jl)%fnow(ji,jj,1) * zfact 444 ENDDO 445 END DO 446 END DO 447 END IF 448 ! ! =========== 449 END DO ! tracer loop 450 ! ! =========== 451 ! 452 IF( nn_timing == 1 ) CALL timing_stop('trc_bc') 453 ! 454 END SUBROUTINE trc_bc 401 455 402 456 #else … … 406 460 CONTAINS 407 461 408 SUBROUTINE trc_bc_ini t( ntrc ) ! Empty routine462 SUBROUTINE trc_bc_ini( ntrc ) ! Empty routine 409 463 INTEGER,INTENT(IN) :: ntrc ! number of tracers 410 WRITE(*,*) 'trc_bc_ini t: You should not have seen this print! error?', kt411 END SUBROUTINE trc_bc_ini t412 413 SUBROUTINE trc_bc _read( kt ) ! Empty routine414 WRITE(*,*) 'trc_bc _read: You should not have seen this print! error?', kt415 END SUBROUTINE trc_bc _read464 WRITE(*,*) 'trc_bc_ini: You should not have seen this print! error?', kt 465 END SUBROUTINE trc_bc_ini 466 467 SUBROUTINE trc_bc( kt ) ! Empty routine 468 WRITE(*,*) 'trc_bc: You should not have seen this print! error?', kt 469 END SUBROUTINE trc_bc 416 470 #endif 417 471 -
branches/2016/dev_r7012_ROBUST5_CNRS/NEMOGCM/NEMO/TOP_SRC/trcdta.F90
r6701 r7198 9 9 !! 3.4 ! 2010-11 (C. Ethe, G. Madec) use of fldread + dynamical allocation 10 10 !! 3.5 ! 2013-08 (M. Vichi) generalization for other BGC models 11 !! 3.6 ! 2015-03 (T. Lovato) revisi on of code log info11 !! 3.6 ! 2015-03 (T. Lovato) revisit code I/O 12 12 !!---------------------------------------------------------------------- 13 13 #if defined key_top … … 28 28 29 29 PUBLIC trc_dta ! called in trcini.F90 and trcdmp.F90 30 PUBLIC trc_dta_ini t! called in trcini.F9030 PUBLIC trc_dta_ini ! called in trcini.F90 31 31 32 32 INTEGER , SAVE, PUBLIC :: nb_trcdta ! number of tracers to be initialised with data … … 45 45 CONTAINS 46 46 47 SUBROUTINE trc_dta_ini t(ntrc)48 !!---------------------------------------------------------------------- 49 !! *** ROUTINE trc_dta_ini t***47 SUBROUTINE trc_dta_ini(ntrc) 48 !!---------------------------------------------------------------------- 49 !! *** ROUTINE trc_dta_ini *** 50 50 !! 51 51 !! ** Purpose : initialisation of passive tracer input data … … 70 70 !!---------------------------------------------------------------------- 71 71 ! 72 IF( nn_timing == 1 ) CALL timing_start('trc_dta_ini t')72 IF( nn_timing == 1 ) CALL timing_start('trc_dta_ini') 73 73 ! 74 74 IF( lwp ) THEN 75 75 WRITE(numout,*) ' ' 76 WRITE(numout,*) ' trc_dta_ini t: Tracers Initial Conditions (IC)'76 WRITE(numout,*) ' trc_dta_ini : Tracers Initial Conditions (IC)' 77 77 WRITE(numout,*) ' ~~~~~~~~~~~ ' 78 78 ENDIF … … 83 83 ALLOCATE( n_trc_index(ntrc), slf_i(ntrc), STAT=ierr0 ) 84 84 IF( ierr0 > 0 ) THEN 85 CALL ctl_stop( 'trc_dta_ini t: unable to allocate n_trc_index' ) ; RETURN85 CALL ctl_stop( 'trc_dta_ini: unable to allocate n_trc_index' ) ; RETURN 86 86 ENDIF 87 87 nb_trcdta = 0 … … 103 103 REWIND( numnat_ref ) ! Namelist namtrc_dta in reference namelist : Passive tracer input data 104 104 READ ( numnat_ref, namtrc_dta, IOSTAT = ios, ERR = 901) 105 901 IF( ios /= 0 ) CALL ctl_nam ( ios , 'namtrc_dta_ini tin reference namelist', lwp )105 901 IF( ios /= 0 ) CALL ctl_nam ( ios , 'namtrc_dta_ini in reference namelist', lwp ) 106 106 107 107 REWIND( numnat_cfg ) ! Namelist namtrc_dta in configuration namelist : Passive tracer input data 108 108 READ ( numnat_cfg, namtrc_dta, IOSTAT = ios, ERR = 902 ) 109 902 IF( ios /= 0 ) CALL ctl_nam ( ios , 'namtrc_dta_ini tin configuration namelist', lwp )109 902 IF( ios /= 0 ) CALL ctl_nam ( ios , 'namtrc_dta_ini in configuration namelist', lwp ) 110 110 IF(lwm) WRITE ( numont, namtrc_dta ) 111 111 … … 118 118 zfact = rn_trfac(jn) 119 119 IF( clndta /= clntrc ) THEN 120 CALL ctl_warn( 'trc_dta_ini t: passive tracer data initialisation ', &120 CALL ctl_warn( 'trc_dta_ini: passive tracer data initialisation ', & 121 121 & 'Input name of data file : '//TRIM(clndta)// & 122 122 & ' differs from that of tracer : '//TRIM(clntrc)//' ') … … 132 132 ALLOCATE( sf_trcdta(nb_trcdta), rf_trfac(nb_trcdta), STAT=ierr1 ) 133 133 IF( ierr1 > 0 ) THEN 134 CALL ctl_stop( 'trc_dta_ini t: unable to allocate sf_trcdta structure' ) ; RETURN134 CALL ctl_stop( 'trc_dta_ini: unable to allocate sf_trcdta structure' ) ; RETURN 135 135 ENDIF 136 136 ! … … 143 143 IF( sn_trcdta(jn)%ln_tint ) ALLOCATE( sf_trcdta(jl)%fdta(jpi,jpj,jpk,2) , STAT=ierr3 ) 144 144 IF( ierr2 + ierr3 > 0 ) THEN 145 CALL ctl_stop( 'trc_dta_ini t: unable to allocate passive tracer data arrays' ) ; RETURN145 CALL ctl_stop( 'trc_dta_ini : unable to allocate passive tracer data arrays' ) ; RETURN 146 146 ENDIF 147 147 ENDIF … … 149 149 ENDDO 150 150 ! ! fill sf_trcdta with slf_i and control print 151 CALL fld_fill( sf_trcdta, slf_i, cn_dir, 'trc_dta_ini t', 'Passive tracer data', 'namtrc' )151 CALL fld_fill( sf_trcdta, slf_i, cn_dir, 'trc_dta_ini', 'Passive tracer data', 'namtrc' ) 152 152 ! 153 153 ENDIF 154 154 ! 155 155 DEALLOCATE( slf_i ) ! deallocate local field structure 156 IF( nn_timing == 1 ) CALL timing_stop('trc_dta_ini t')157 ! 158 END SUBROUTINE trc_dta_ini t159 160 161 SUBROUTINE trc_dta( kt, sf_trcdta, ptrfac, ptrc)156 IF( nn_timing == 1 ) CALL timing_stop('trc_dta_ini') 157 ! 158 END SUBROUTINE trc_dta_ini 159 160 161 SUBROUTINE trc_dta( kt, sf_trcdta, ztrcfac, ztrcdta) 162 162 !!---------------------------------------------------------------------- 163 163 !! *** ROUTINE trc_dta *** … … 169 169 !! - ln_trcdmp=F: deallocates the data structure as they are not used 170 170 !! 171 !! ** Action : sf_trcdta passive tracer data on me dlmesh and interpolated at time-step kt172 !!---------------------------------------------------------------------- 173 INTEGER , INTENT(in ) :: kt! ocean time-step174 TYPE(FLD), DIMENSION(1) , INTENT(inout) :: sf_trcdta! array of information on the field to read175 REAL(wp) , INTENT(in ) :: ptrfac! multiplication factor176 REAL(wp), DIMENSION(jpi,jpj,jpk), OPTIONAL , INTENT(out ) :: ptrc171 !! ** Action : sf_trcdta passive tracer data on meld mesh and interpolated at time-step kt 172 !!---------------------------------------------------------------------- 173 INTEGER , INTENT(in ) :: kt ! ocean time-step 174 TYPE(FLD), DIMENSION(1) , INTENT(inout) :: sf_trcdta ! array of information on the field to read 175 REAL(wp) , INTENT(in ) :: ztrcfac ! multiplication factor 176 REAL(wp), DIMENSION(jpi,jpj,jpk), INTENT(inout ) :: ztrcdta ! 3D data array 177 177 ! 178 178 INTEGER :: ji, jj, jk, jl, jkk, ik ! dummy loop indices 179 179 REAL(wp):: zl, zi 180 180 REAL(wp), DIMENSION(jpk) :: ztp ! 1D workspace 181 REAL(wp), POINTER, DIMENSION(:,:,:) :: ztrcdta ! 3D workspace182 181 CHARACTER(len=100) :: clndta 183 182 !!---------------------------------------------------------------------- … … 187 186 IF( nb_trcdta > 0 ) THEN 188 187 ! 189 CALL wrk_alloc( jpi, jpj, jpk, ztrcdta ) ! Memory allocation 190 ! 191 CALL fld_read( kt, 1, sf_trcdta ) !== read data at kt time step ==! 192 ztrcdta(:,:,:) = sf_trcdta(1)%fnow(:,:,:) * tmask(:,:,:) ! Mask 193 ! 194 IF( ln_sco ) THEN !== s- or mixed s-zps-coordinate ==! 188 ! read data at kt time step 189 CALL fld_read( kt, 1, sf_trcdta ) 190 ztrcdta(:,:,:) = sf_trcdta(1)%fnow(:,:,:) * tmask(:,:,:) 191 ! 192 IF( ln_sco ) THEN !== s- or mixed s-zps-coordinate ==! 195 193 ! 196 194 IF( kt == nit000 .AND. lwp )THEN … … 205 203 ztp(jk) = ztrcdta(ji,jj,1) 206 204 ELSEIF( zl > gdept_1d(jpk) ) THEN ! below the last level of data 207 ztp(jk) = 205 ztp(jk) = ztrcdta(ji,jj,jpkm1) 208 206 ELSE ! inbetween : vertical interpolation between jkk & jkk+1 209 207 DO jkk = 1, jpkm1 ! when gdept(jkk) < zl < gdept(jkk+1) 210 208 IF( (zl-gdept_1d(jkk)) * (zl-gdept_1d(jkk+1)) <= 0._wp ) THEN 211 209 zi = ( zl - gdept_1d(jkk) ) / (gdept_1d(jkk+1)-gdept_1d(jkk)) 212 ztp(jk) = ztrcdta(ji,jj,jkk) + ( ztrcdta(ji,jj,jkk+1) - & 213 ztrcdta(ji,jj,jkk) ) * zi 210 ztp(jk) = ztrcdta(ji,jj,jkk) + ( ztrcdta(ji,jj,jkk+1) - ztrcdta(ji,jj,jkk) ) * zi 214 211 ENDIF 215 212 END DO … … 217 214 END DO 218 215 DO jk = 1, jpkm1 219 ztrcdta(ji,jj,jk) = ztp(jk) * tmask(ji,jj,jk) ! mask required for mixed zps-s-coord216 ztrcdta(ji,jj,jk) = ztp(jk) * tmask(ji,jj,jk) ! mask required for mixed zps-s-coord 220 217 END DO 221 218 ztrcdta(ji,jj,jpk) = 0._wp … … 224 221 ! 225 222 ELSE !== z- or zps- coordinate ==! 226 ! 227 IF( ln_zps ) THEN ! zps-coordinate (partial steps) interpolation at the last ocean level223 ! zps-coordinate (partial steps) interpolation at the last ocean level 224 IF( ln_zps ) THEN 228 225 DO jj = 1, jpj 229 226 DO ji = 1, jpi … … 244 241 ENDIF 245 242 ! 246 ! Add multiplicative factor 247 ztrcdta(:,:,:) = ztrcdta(:,:,:) * ptrfac 248 ! 249 ! Data structure for trc_ini (and BFMv5.1 coupling) 250 IF( .NOT. PRESENT(ptrc) ) sf_trcdta(1)%fnow(:,:,:) = ztrcdta(:,:,:) 251 ! 252 ! Data structure for trc_dmp 253 IF( PRESENT(ptrc) ) ptrc(:,:,:) = ztrcdta(:,:,:) 254 ! 255 CALL wrk_dealloc( jpi, jpj, jpk, ztrcdta ) 243 ! Scale by multiplicative factor 244 ztrcdta(:,:,:) = ztrcdta(:,:,:) * ztrcfac 256 245 ! 257 246 ENDIF … … 266 255 !!---------------------------------------------------------------------- 267 256 CONTAINS 268 SUBROUTINE trc_dta( kt, sf_trcdta, ptrfac, ptrc) ! Empty routine257 SUBROUTINE trc_dta( kt, sf_trcdta, ztrcfac, ztrcdta) ! Empty routine 269 258 WRITE(*,*) 'trc_dta: You should not have seen this print! error?', kt 270 259 END SUBROUTINE trc_dta -
branches/2016/dev_r7012_ROBUST5_CNRS/NEMOGCM/NEMO/TOP_SRC/trcini.F90
r7162 r7198 25 25 USE lib_mpp ! distribued memory computing library 26 26 USE trcice ! tracers in sea ice 27 USE trcbc, only : trc_bc_ini t! generalized Boundary Conditions27 USE trcbc, only : trc_bc_ini ! generalized Boundary Conditions 28 28 29 29 IMPLICIT NONE … … 224 224 ! 225 225 ! Initialisation of tracers Initial Conditions 226 IF( ln_trcdta ) CALL trc_dta_ini t(jptra)226 IF( ln_trcdta ) CALL trc_dta_ini(jptra) 227 227 228 228 ! Initialisation of tracers Boundary Conditions 229 IF( ln_my_trc ) CALL trc_bc_ini t(jptra)229 IF( ln_my_trc ) CALL trc_bc_ini(jptra) 230 230 231 231 IF( ln_rsttr ) THEN … … 234 234 ! 235 235 ELSE 236 ! 237 IF( ln_trcdta .AND. nb_trcdta > 0 ) THEN ! Initialisation of tracer from a file that may also be used for damping238 ! 236 ! Initialisation of tracer from a file that may also be used for damping 237 IF( ln_trcdta .AND. nb_trcdta > 0 ) THEN 238 ! update passive tracers arrays with input data read from file 239 239 DO jn = 1, jptra 240 IF( ln_trc_ini(jn) ) THEN ! update passive tracers arrays with input data read from file240 IF( ln_trc_ini(jn) ) THEN 241 241 jl = n_trc_index(jn) 242 CALL trc_dta( nit000, sf_trcdta(jl), rf_trfac(jl) ) ! read tracer data at nit000 243 trn(:,:,:,jn) = sf_trcdta(jl)%fnow(:,:,:) 242 CALL trc_dta( nit000, sf_trcdta(jl), rf_trfac(jl), trn(:,:,:,jn) ) 244 243 ! 245 IF( .NOT.ln_trcdmp .AND. .NOT.ln_trcdmp_clo ) THEN !== deallocate data structure ==!246 ! (data used only for initialisation)244 ! deallocate data structure if data are not used for damping 245 IF( .NOT.ln_trcdmp .AND. .NOT.ln_trcdmp_clo ) THEN 247 246 IF(lwp) WRITE(numout,*) 'trc_dta: deallocate data arrays as they are only used to initialize the run' 248 DEALLOCATE( sf_trcdta(jl)%fnow ) ! arrays in the structure247 DEALLOCATE( sf_trcdta(jl)%fnow ) 249 248 IF( sf_trcdta(jl)%ln_tint ) DEALLOCATE( sf_trcdta(jl)%fdta ) 250 249 ! -
branches/2016/dev_r7012_ROBUST5_CNRS/NEMOGCM/NEMO/TOP_SRC/trcnam.F90
r7124 r7198 145 145 INTEGER :: ios, ierr, icfc ! Local integer output status for namelist read 146 146 !! 147 NAMELIST/namtrc/jp tra, ln_pisces, ln_my_trc, ln_age, ln_cfc11, ln_cfc12, ln_c14, &148 & sn_tracer, ln_trcdta, ln_trcdmp, ln_trcdmp_clo 147 NAMELIST/namtrc/jp_bgc, ln_pisces, ln_my_trc, ln_age, ln_cfc11, ln_cfc12, ln_c14, & 148 & sn_tracer, ln_trcdta, ln_trcdmp, ln_trcdmp_clo, jp_dia3d, jp_dia2d 149 149 !!--------------------------------------------------------------------- 150 150 ! Dummy settings to fill tracers data structure … … 167 167 ! Control settings 168 168 IF( ln_pisces .AND. ln_my_trc ) CALL ctl_stop( 'Choose only ONE BGC model - PISCES or MY_TRC' ) 169 IF( .NOT. ln_pisces .AND. .NOT. ln_my_trc ) jp tra= 0169 IF( .NOT. ln_pisces .AND. .NOT. ln_my_trc ) jp_bgc = 0 170 170 ll_cfc = ln_cfc11 .OR. ln_cfc12 171 171 ! 172 jptra = 0 172 173 jp_pisces = 0 ; jp_pcs0 = 0 ; jp_pcs1 = 0 173 174 jp_my_trc = 0 ; jp_myt0 = 0 ; jp_myt1 = 0 174 175 jp_cfc = 0 ; jp_cfc0 = 0 ; jp_cfc1 = 0 175 jp_age = 0 ; jp_c14 = 0176 jp_age = 0 ; jp_c14 = 0 176 177 ! 177 178 IF( ln_pisces ) THEN 178 jp_pisces = jp tra179 jp_pisces = jp_bgc 179 180 jp_pcs0 = 1 180 181 jp_pcs1 = jp_pisces 181 182 ENDIF 182 183 IF( ln_my_trc ) THEN 183 jp_my_trc = jp tra184 jp_my_trc = jp_bgc 184 185 jp_myt0 = 1 185 186 jp_myt1 = jp_my_trc 186 187 ENDIF 187 188 ! 188 jp _bgc = jptra189 jptra = jp_bgc 189 190 ! 190 191 IF( ln_age ) THEN … … 210 211 WRITE(numout,*) ' Namelist : namtrc' 211 212 WRITE(numout,*) ' Total number of passive tracers jptra = ', jptra 213 WRITE(numout,*) ' Total number of BGC tracers jp_bgc = ', jp_bgc 212 214 WRITE(numout,*) ' Simulating PISCES model ln_pisces = ', ln_pisces 213 215 WRITE(numout,*) ' Simulating MY_TRC model ln_my_trc = ', ln_my_trc … … 219 221 WRITE(numout,*) ' Damping of passive tracer (y/n) ln_trcdmp = ', ln_trcdmp 220 222 WRITE(numout,*) ' Restoring of tracer on closed seas ln_trcdmp_clo = ', ln_trcdmp_clo 221 WRITE(numout,*) ' Total number of BGC-like tracers jp_bgc = ', jp_bgc222 223 WRITE(numout,*) ' ' 223 224 WRITE(numout,*) ' ' -
branches/2016/dev_r7012_ROBUST5_CNRS/NEMOGCM/SETTE/sette.sh
r6460 r7198 306 306 # set_namelist namelist_cfg nn_solv 2 307 307 set_namelist namelist_top_cfg ln_trcdta .false. 308 set_namelist namelist_top_cfg ln_diatrc .false.309 308 # put ln_ironsed, ln_river, ln_ndepo, ln_dust to false 310 309 # if not you need input files, and for tests is not necessary … … 341 340 set_namelist namelist_cfg jpnij 8 342 341 # set_namelist namelist_cfg nn_solv 2 343 set_namelist namelist_top_cfg ln_diatrc .false.344 342 set_namelist namelist_top_cfg ln_rsttr .true. 345 343 set_namelist namelist_top_cfg nn_rsttr 2 … … 400 398 # set_namelist namelist_cfg nn_solv 2 401 399 set_namelist namelist_top_cfg ln_trcdta .false. 402 set_namelist namelist_top_cfg ln_diatrc .false.403 400 # put ln_ironsed, ln_river, ln_ndepo, ln_dust to false 404 401 # if not you need input files, and for tests is not necessary … … 439 436 # set_namelist namelist_cfg nn_solv 2 440 437 set_namelist namelist_top_cfg ln_trcdta .false. 441 set_namelist namelist_top_cfg ln_diatrc .false.442 438 # put ln_ironsed, ln_river, ln_ndepo, ln_dust to false 443 439 # if not you need input files, and for tests is not necessary … … 486 482 set_namelist namelist_cfg jpnij 8 487 483 set_namelist namelist_top_cfg ln_trcdta .false. 488 set_namelist namelist_top_cfg ln_diatrc .false.489 484 # put ln_ironsed, ln_river, ln_ndepo, ln_dust to false 490 485 # if not you need input files, and for tests is not necessary … … 519 514 set_namelist namelist_cfg jpnj 4 520 515 set_namelist namelist_cfg jpnij 8 521 set_namelist namelist_top_cfg ln_diatrc .false.522 516 set_namelist namelist_top_cfg ln_rsttr .true. 523 517 set_namelist namelist_top_cfg nn_rsttr 2 … … 572 566 set_namelist namelist_cfg jpnij 16 573 567 set_namelist namelist_top_cfg ln_trcdta .false. 574 set_namelist namelist_top_cfg ln_diatrc .false.575 568 # put ln_ironsed, ln_river, ln_ndepo, ln_dust to false 576 569 # if not you need input files, and for tests is not necessary … … 610 603 set_namelist namelist_cfg jpnij 16 611 604 set_namelist namelist_top_cfg ln_trcdta .false. 612 set_namelist namelist_top_cfg ln_diatrc .false.613 605 # put ln_ironsed, ln_river, ln_ndepo, ln_dust to false 614 606 # if not you need input files, and for tests is not necessary
Note: See TracChangeset
for help on using the changeset viewer.
