Changeset 7646 for trunk/NEMOGCM/CONFIG/SHARED/namelist_pisces_ref
- Timestamp:
- 2017-02-06T10:25:03+01:00 (7 years ago)
- File:
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- 1 edited
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trunk/NEMOGCM/CONFIG/SHARED/namelist_pisces_ref (modified) (18 diffs)
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trunk/NEMOGCM/CONFIG/SHARED/namelist_pisces_ref
r6945 r7646 1 1 !!>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> 2 !! PISCES (key_pisces) reference namelist (see below for key_pisces_reduced)2 !! PISCES reference namelist 3 3 !! 1 - air-sea exchange (nampisext) 4 4 !! 2 - biological parameters (nampisbio) … … 9 9 !! 7 - parameters for calcite chemistry (nampiscal) 10 10 !! 8 - parameters for inputs deposition (nampissed) 11 !! 9 - parameters for Kriest parameterization (nampiskrp, nampiskrs)12 !! 10 - additional 2D/3D diagnostics (nampisdia)13 11 !! 11 - Damping (nampisdmp) 14 !>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> 15 !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' 12 !----------------------------------------------------------------------- 13 &nampismod ! Model used 14 !----------------------------------------------------------------------- 15 ln_p2z = .false. ! LOBSTER model used 16 ln_p4z = .true. ! PISCES model used 17 ln_p5z = .false. ! PISCES QUOTA model used 18 ln_ligand = .false. ! Enable organic ligands 19 / 20 !----------------------------------------------------------------------- 16 21 &nampisext ! air-sea exchange 17 ! ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,22 !----------------------------------------------------------------------- 18 23 ln_co2int = .false. ! read atm pco2 from a file (T) or constant (F) 19 24 atcco2 = 280. ! Constant value atmospheric pCO2 - ln_co2int = F … … 23 28 ! ! then the first atmospheric CO2 record read is at years(1) 24 29 / 25 ! '''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''30 !----------------------------------------------------------------------- 26 31 &nampisatm ! Atmospheric prrssure 27 ! ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,32 !----------------------------------------------------------------------- 28 33 ! ! file name ! frequency (hours) ! variable ! time interp. ! clim ! 'yearly'/ ! weights ! rotation ! land/sea mask ! 29 34 ! ! ! (if <0 months) ! name ! (logical) ! (T/F) ! 'monthly' ! filename ! pairing ! filename ! 30 35 sn_patm = 'presatm' , -1 , 'patm' , .true. , .true. , 'yearly' , '' , '' , '' 36 sn_atmco2 = 'presatmco2' , -1 , 'xco2' , .true. , .true. , 'yearly' , '' , '' , '' 31 37 cn_dir = './' ! root directory for the location of the dynamical files 32 38 ! 33 ln_presatm = .false. ! constant atmopsheric pressure (F) or from a file (T) 34 / 35 !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' 39 ln_presatm = .false. ! constant atmopsheric pressure (F) or from a file (T) 40 ln_presatmco2 = .false. ! Read spatialized atm co2 files [ppm] if TRUE 41 / 42 !----------------------------------------------------------------------- 36 43 &nampisbio ! biological parameters 37 ! ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,44 !----------------------------------------------------------------------- 38 45 nrdttrc = 1 ! time step frequency for biology 39 46 wsbio = 2. ! POC sinking speed 40 47 xkmort = 2.E-7 ! half saturation constant for mortality 41 48 ferat3 = 10.E-6 ! Fe/C in zooplankton 42 wsbio2 = 30. ! Big particles sinking speed 49 wsbio2 = 50. ! Big particles sinking speed 50 wsbio2max = 50. ! Big particles maximum sinking speed 51 wsbio2scale= 5000. ! Big particles length scale of sinking 43 52 niter1max = 1 ! Maximum number of iterations for POC 44 niter2max = 1 ! Maximum number of iterations for GOC 45 / 46 !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' 47 &nampislim ! parameters for nutrient limitations 48 !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 53 niter2max = 2 ! Maximum number of iterations for GOC 54 ! ! ln_ligand enabled 55 wfep = 0.2 ! FeP sinking speed 56 ldocp = 1.E-5 ! Phyto ligand production per unit doc 57 ldocz = 1.E-5 ! Zoo ligand production per unit doc 58 lthet = 0.5 ! Proportional loss of ligands due to Fe uptake 59 ! ! ln_p5z enabled 60 no3rat3 = 0.182 ! N/C ratio in zooplankton 61 po4rat3 = 0.0094 ! P/C ratio in zooplankton 62 / 63 !----------------------------------------------------------------------- 64 &namp4zlim ! parameters for nutrient limitations for PISCES std - ln_p4z 65 !----------------------------------------------------------------------- 49 66 concnno3 = 1.e-6 ! Nitrate half saturation of nanophytoplankton 50 67 concdno3 = 3.E-6 ! Nitrate half saturation for diatoms … … 66 83 qdfelim = 7.E-6 ! Optimal quota of diatoms 67 84 caco3r = 0.3 ! mean rain ratio 68 oxymin = 1.E-6 ! Half-saturation constant for anoxia 69 / 70 !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' 85 oxymin = 1.E-6 ! Half-saturation constant for anoxia 86 / 87 !----------------------------------------------------------------------- 88 &namp5zlim ! parameters for nutrient limitations PISCES QUOTA - ln_p5z 89 !----------------------------------------------------------------------- 90 concnno3 = 3e-6 ! Nitrate half saturation of nanophytoplankton 91 concpno3 = 1e-6 92 concdno3 = 4E-6 ! Phosphate half saturation for diatoms 93 concnnh4 = 1.5E-6 ! NH4 half saturation for phyto 94 concpnh4 = 4E-7 95 concdnh4 = 2E-6 ! NH4 half saturation for diatoms 96 concnpo4 = 3E-6 ! PO4 half saturation for phyto 97 concppo4 = 1.5E-6 98 concdpo4 = 4E-6 ! PO4 half saturation for diatoms 99 concnfer = 3E-9 ! Iron half saturation for phyto 100 concpfer = 1.5E-9 101 concdfer = 4E-9 ! Iron half saturation for diatoms 102 concbfe = 1.E-11 ! Half-saturation for Fe limitation of Bacteria 103 concbnh4 = 1.E-7 ! NH4 half saturation for phyto 104 concbno3 = 5.E-7 ! Phosphate half saturation for diatoms 105 concbpo4 = 1E-7 ! Phosphate half saturation for bacteria 106 xsizedia = 1.E-6 ! Minimum size criteria for diatoms 107 xsizephy = 1.E-6 ! Minimum size criteria for phyto 108 xsizepic = 1.E-6 109 xsizern = 1.0 ! Size ratio for nanophytoplankton 110 xsizerp = 1.0 111 xsizerd = 4.0 ! Size ratio for diatoms 112 xksi1 = 2.E-6 ! half saturation constant for Si uptake 113 xksi2 = 20E-6 ! half saturation constant for Si/C 114 xkdoc = 417.E-6 ! half-saturation constant of DOC remineralization 115 caco3r = 0.35 ! mean rain ratio 116 oxymin = 1.E-6 ! Half-saturation constant for anoxia 117 / 118 !----------------------------------------------------------------------- 119 &namp5zquota ! parameters for nutrient limitations PISCES quota - ln_p5z 120 !----------------------------------------------------------------------- 121 qfnopt = 7.E-6 ! Optimal Fe quota of nanophyto 122 qfpopt = 7.E-6 ! Optimal Fe quota of picophyto 123 qfdopt = 7.E-6 ! Optimal quota of diatoms 124 qnnmin = 0.29 ! Minimal N quota for nano 125 qnnmax = 1.39 ! Maximal N quota for nano 126 qpnmin = 0.28 ! Minimal P quota for nano 127 qpnmax = 1.06 ! Maximal P quota for nano 128 qnpmin = 0.42 ! Minimal N quota for pico 129 qnpmax = 1.39 ! Maximal N quota for pico 130 qppmin = 0.25 ! Minimal P quota for pico 131 qppmax = 0.7 ! Maximal P quota for pico 132 qndmin = 0.25 ! Minimal N quota for diatoms 133 qndmax = 1.39 ! Maximal N quota for diatoms 134 qpdmin = 0.29 ! Minimal P quota for diatoms 135 qpdmax = 1.32 ! Maximal P quota for diatoms 136 qfnmax = 40E-6 ! Maximal Fe quota for nano 137 qfpmax = 40E-6 ! Maximal Fe quota for pico 138 qfdmax = 40E-6 ! Maximal Fe quota for diatoms 139 / 140 !----------------------------------------------------------------------- 71 141 &nampisopt ! parameters for optics 72 ! ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,142 !----------------------------------------------------------------------- 73 143 ! ! file name ! frequency (hours) ! variable ! time interp. ! clim ! 'yearly'/ ! weights ! rotation ! land/sea mask ! 74 144 ! ! ! (if <0 months) ! name ! (logical) ! (T/F) ! 'monthly' ! filename ! pairing ! filename ! … … 78 148 parlux = 0.43 ! Fraction of shortwave as PAR 79 149 / 80 ! '''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''81 &namp isprod ! parameters for phytoplankton growth82 ! ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,83 pislope 84 pislope 2= 2. ! P-I slope for diatoms150 !----------------------------------------------------------------------- 151 &namp4zprod ! parameters for phytoplankton growth for PISCES std - ln_p4z 152 !----------------------------------------------------------------------- 153 pislopen = 2. ! P-I slope 154 pisloped = 2. ! P-I slope for diatoms 85 155 xadap = 0. ! Adaptation factor to low light 86 excret 87 excret 2= 0.05 ! excretion ratio of diatoms156 excretn = 0.05 ! excretion ratio of phytoplankton 157 excretd = 0.05 ! excretion ratio of diatoms 88 158 ln_newprod = .true. ! Enable new parame. of production (T/F) 89 159 bresp = 0.033 ! Basal respiration rate … … 95 165 grosip = 0.159 ! mean Si/C ratio 96 166 / 97 !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' 98 &nampismort ! parameters for phytoplankton sinks 99 !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 100 wchl = 0.01 ! quadratic mortality of phytoplankton 167 !----------------------------------------------------------------------- 168 &namp5zprod ! parameters for phytoplankton growth for PISCES quota - ln_p5z 169 !----------------------------------------------------------------------- 170 pislopen = 3. ! P-I slope 171 pislopep = 3. ! P-I slope for picophytoplankton 172 pisloped = 3. ! P-I slope for diatoms 173 excretn = 0.05 ! excretion ratio of phytoplankton 174 excretp = 0.05 ! excretion ratio of picophytoplankton 175 excretd = 0.05 ! excretion ratio of diatoms 176 xadap = 0. ! Adaptation factor to low light 177 bresp = 0.02 ! Basal respiration rate 178 thetannm = 0.25 ! Maximum Chl/N in nanophytoplankton 179 thetanpm = 0.25 ! Maximum Chl/N in picophytoplankton 180 thetandm = 0.3 ! Maximum Chl/N in diatoms 181 chlcmin = 0.004 ! Minimum Chl/c in phytoplankton 182 grosip = 0.131 ! mean Si/C ratio 183 / 184 !----------------------------------------------------------------------- 185 &namp4zmort ! parameters for phytoplankton sinks for PISCES std - ln_p4z 186 !----------------------------------------------------------------------- 187 wchl = 0.01 ! quadratic mortality of phytoplankton 101 188 wchld = 0.01 ! maximum quadratic mortality of diatoms 102 189 wchldm = 0.03 ! maximum quadratic mortality of diatoms … … 104 191 mprat2 = 0.01 ! Diatoms mortality rate 105 192 / 106 !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' 107 &nampismes ! parameters for mesozooplankton 108 !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 193 !----------------------------------------------------------------------- 194 &namp5zmort ! parameters for phytoplankton sinks for PISCES quota - ln_p5z 195 !----------------------------------------------------------------------- 196 wchln = 0.01 ! quadratic mortality of nanophytoplankton 197 wchlp = 0.01 ! quadratic mortality of picophytoplankton 198 wchld = 0.01 ! maximum quadratic mortality of diatoms 199 wchldm = 0.02 ! maximum quadratic mortality of diatoms 200 mpratn = 0.01 ! nanophytoplankton mortality rate 201 mpratp = 0.01 ! picophytoplankton mortality rate 202 mprat2 = 0.01 ! Diatoms mortality rate 203 / 204 !----------------------------------------------------------------------- 205 &namp4zmes ! parameters for mesozooplankton for PISCES std - ln_p4z 206 !----------------------------------------------------------------------- 109 207 part2 = 0.75 ! part of calcite not dissolved in mesozoo guts 110 208 grazrat2 = 0.75 ! maximal mesozoo grazing rate … … 126 224 grazflux = 2.e3 ! flux-feeding rate 127 225 / 128 !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' 129 &nampiszoo ! parameters for microzooplankton 130 !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 131 part = 0.5 ! part of calcite not dissolved in microzoo gutsa 226 !----------------------------------------------------------------------- 227 &namp5zmes ! parameters for mesozooplankton 228 !----------------------------------------------------------------------- 229 part2 = 0.75 ! part of calcite not dissolved in mesozoo guts 230 grazrat2 = 0.85 ! maximal mesozoo grazing rate 231 bmetexc2 = .true. ! Metabolic use of excess carbon 232 resrat2 = 0.005 ! exsudation rate of mesozooplankton 233 mzrat2 = 0.02 ! mesozooplankton mortality rate 234 xpref2d = 1. ! zoo preference for phyto 235 xpref2p = 1. ! zoo preference for POC 236 xpref2z = 1. ! zoo preference for zoo 237 xpref2m = 0.2 ! meso preference for zoo 238 xpref2c = 0.3 ! zoo preference for poc 239 xthresh2zoo = 1E-8 ! zoo feeding threshold for mesozooplankton 240 xthresh2dia = 1E-8 ! diatoms feeding threshold for mesozooplankton 241 xthresh2phy = 1E-8 ! nanophyto feeding threshold for mesozooplankton 242 xthresh2mes = 1E-8 ! meso feeding threshold for mesozooplankton 243 xthresh2poc = 1E-8 ! poc feeding threshold for mesozooplankton 244 xthresh2 = 3E-7 ! Food threshold for grazing 245 xkgraz2 = 20.E-6 ! half sturation constant for meso grazing 246 epsher2 = 0.5 ! Efficicency of Mesozoo growth 247 ssigma2 = 0.5 ! Fraction excreted as semi-labile DOM 248 srespir2 = 0.2 ! Active respiration 249 unass2c = 0.3 ! non assimilated fraction of P by mesozoo 250 unass2n = 0.3 ! non assimilated fraction of N by mesozoo 251 unass2p = 0.3 ! non assimilated fraction of P by mesozoo 252 grazflux = 3.e3 ! flux-feeding rate 253 / 254 !----------------------------------------------------------------------- 255 &namp4zzoo ! parameters for microzooplankton for PISCES std - ln_p4z 256 !----------------------------------------------------------------------- 257 part = 0.5 ! part of calcite not dissolved in microzoo guts 132 258 grazrat = 3.0 ! maximal zoo grazing rate 133 259 resrat = 0.03 ! exsudation rate of zooplankton … … 145 271 unass = 0.3 ! non assimilated fraction of phyto by zoo 146 272 / 147 !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' 273 !----------------------------------------------------------------------- 274 &namp5zzoo ! parameters for microzooplankton 275 !----------------------------------------------------------------------- 276 part = 0.5 ! part of calcite not dissolved in microzoo gutsa 277 grazrat = 2.75 ! maximal zoo grazing rate 278 bmetexc = .true. ! Metabolic use of excess carbon 279 resrat = 0.03 ! exsudation rate of zooplankton 280 mzrat = 0.005 ! zooplankton mortality rate 281 xprefc = 0.1 ! Microzoo preference for POM 282 xprefn = 1. ! Microzoo preference for Nanophyto 283 xprefp = 1.6 ! Microzoo preference for picophyto 284 xprefd = 1.0 ! Microzoo preference for Diatoms 285 xprefz = 0.3 ! Microzoo preference for microzooplankton 286 xthreshdia = 1.E-8 ! Diatoms feeding threshold for microzooplankton 287 xthreshphy = 1.E-8 ! Nanophyto feeding threshold for microzooplankton 288 xthreshpic = 1.E-8 289 xthreshzoo = 1.E-8 ! Nanophyto feeding threshold for microzooplankton 290 xthreshpoc = 1.E-8 ! POC feeding threshold for microzooplankton 291 xthresh = 3.E-7 ! Food threshold for feeding 292 xkgraz = 20.E-6 ! half sturation constant for grazing 293 epsher = 0.5 ! Efficiency of microzoo growth 294 ssigma = 0.5 ! Fraction excreted as semi-labile DOM 295 srespir = 0.2 ! Active respiration 296 unassc = 0.3 ! non assimilated fraction of C by zoo 297 unassn = 0.3 ! non assimilated fraction of C by zoo 298 unassp = 0.3 ! non assimilated fraction of C by zoo 299 / 300 !----------------------------------------------------------------------- 148 301 &nampisfer ! parameters for iron chemistry 149 ! ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,302 !----------------------------------------------------------------------- 150 303 ln_fechem = .false. ! complex iron chemistry ( T/F ) 151 304 ln_ligvar = .false. ! variable ligand concentration 152 xlam1 = 0.005 ! scavenging rate of Iron 153 xlamdust = 150.0 ! Scavenging rate of dust 154 ligand = 0.6E-9 ! Ligands concentration 155 / 156 !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' 305 ln_fecolloid = .false. ! variable colloidal fraction 306 xlam1 = 0.005 ! scavenging rate of Iron 307 xlamdust = 150.0 ! Scavenging rate of dust 308 ligand = 0.6E-9 ! Ligands concentration 309 kfep = 0. ! Nanoparticle formation rate constant 310 / 311 !----------------------------------------------------------------------- 157 312 &nampisrem ! parameters for remineralization 158 ! ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,313 !----------------------------------------------------------------------- 159 314 xremik = 0.3 ! remineralization rate of DOC 160 xremip = 0.025 ! remineralisation rate of POC161 315 nitrif = 0.05 ! NH4 nitrification rate 162 316 xsirem = 0.003 ! remineralization rate of Si 163 317 xsiremlab = 0.03 ! fast remineralization rate of Si 164 318 xsilab = 0.5 ! Fraction of labile biogenic silica 165 / 166 !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' 319 feratb = 10.E-6 ! Fe/C quota in bacteria 320 xkferb = 2.5E-10 ! Half-saturation constant for bacteria Fe/C 321 ! ! ln_p5z 322 xremikc = 0.25 ! remineralization rate of DOC 323 xremikn = 0.35 ! remineralization rate of DON 324 xremikp = 0.4 ! remineralization rate of DOP 325 ! feratb = 20E-6 ! Bacterial Fe/C ratio 326 ! xkferb = 3E-10 ! Half-saturation constant for bact. Fe/C 327 / 328 !----------------------------------------------------------------------- 329 &nampispoc ! parameters for organic particles 330 !----------------------------------------------------------------------- 331 xremip = 0.035 ! remineralisation rate of PON 332 jcpoc = 15 ! Number of lability classes 333 rshape = 1.0 ! Shape of the gamma function 334 ! ! ln_p5z 335 xremipc = 0.02 ! remineralisation rate of POC 336 xremipn = 0.025 ! remineralisation rate of PON 337 xremipp = 0.03 ! remineralisation rate of POP 338 / 339 !----------------------------------------------------------------------- 167 340 &nampiscal ! parameters for Calcite chemistry 168 ! ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,341 !----------------------------------------------------------------------- 169 342 kdca = 6. ! calcite dissolution rate constant (1/time) 170 343 nca = 1. ! order of dissolution reaction (dimensionless) 171 344 / 172 ! '''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''345 !----------------------------------------------------------------------- 173 346 &nampissbc ! parameters for inputs deposition 174 ! ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,347 !----------------------------------------------------------------------- 175 348 ! ! file name ! frequency (hours) ! variable ! time interp. ! clim ! 'yearly'/ ! weights ! rotation ! land/sea mask ! 176 349 ! ! ! (if <0 months) ! name ! (logical) ! (T/F) ! 'monthly' ! filename ! pairing ! filename ! … … 205 378 concfediaz = 1.e-10 ! Diazotrophs half-saturation Cste for Iron 206 379 hratio = 1.e+7 ! Fe to 3He ratio assumed for vent iron supply 207 / 208 !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' 380 ! ! ln_ligand 381 fep_rats = 1. ! Fep/Fer ratio from sed sources 382 fep_rath = 1. ! Fep/Fer ratio from sed hydro sources 383 lgw_rath = 0.5 ! Weak ligand ratio from sed hydro sources 384 / 385 !----------------------------------------------------------------------- 386 &nampislig ! Namelist parameters for ligands, nampislig 387 !----------------------------------------------------------------------- 388 rfep = 0.001 ! Dissolution rate of FeP 389 rlgw = 1. ! Lifetime (years) of weak ligands 390 rlig = 1.E-4 ! Remin ligand production per unit C 391 prlgw = 1.E-4 ! Photolysis of weak ligand 392 rlgs = 1000. ! Lifetime (years) of strong ligands 393 / 394 !----------------------------------------------------------------------- 209 395 &nampisice ! Prescribed sea ice tracers 210 ! ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,396 !----------------------------------------------------------------------- 211 397 ! constant ocean tracer concentrations are defined in trcice_pisces.F90 (Global, Arctic, Antarctic and Baltic) 212 398 ! trc_ice_ratio * betw 0 and 1: prescribed ice/ocean tracer concentration ratio … … 219 405 ! cn_trc_o * 'GL' use global ocean values making the Baltic distinction only 220 406 ! 'AA' use specific Arctic/Antarctic/Baltic values 221 ! ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,407 !----------------------------------------------------------------------- 222 408 ! sn_tri_ ! trc_ice_ratio ! trc_ice_prescr ! cn_trc_o 223 409 sn_tri_dic = -1., -99., 'AA' … … 247 433 sn_tri_nh4 = 1., -99., 'AA' 248 434 / 249 !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' 250 &nampiskrp ! Kriest parameterization : parameters "key_kriest" 251 !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 252 xkr_eta = 1.17 ! Sinking exponent 253 xkr_zeta = 2.28 ! N content exponent 254 xkr_ncontent = 5.7E-6 ! N content factor 255 xkr_mass_min = 0.0002 ! Minimum mass for Aggregates 256 xkr_mass_max = 1. ! Maximum mass for Aggregates 257 / 258 !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' 259 &nampiskrs ! Kriest parameterization : size classes "key_kriest" 260 !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 261 xkr_sfact = 942. ! Sinking factor 262 xkr_stick = 0.5 ! Stickiness 263 xkr_nnano = 2.337 ! Nbr of cell in nano size class 264 xkr_ndiat = 3.718 ! Nbr of cell in diatoms size class 265 xkr_nmeso = 7.147 ! Nbr of cell in mesozoo size class 266 xkr_naggr = 9.877 ! Nbr of cell in aggregates size class 267 / 268 !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' 269 &nampisdia ! additional 2D/3D tracers diagnostics 270 !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 271 ! ! name ! title of the field ! units ! 272 ! ! ! ! ! 273 pisdia2d(1) = 'Cflx ' , 'DIC flux ', 'molC/m2/s ' 274 pisdia2d(2) = 'Oflx ' , 'Oxygen flux ', 'molC/m2/s ' 275 pisdia2d(3) = 'Kg ' , 'Gas transfer ', 'mol/m2/s/uatm' 276 pisdia2d(4) = 'Delc ' , 'Delta CO2 ', 'uatm ' 277 pisdia2d(5) = 'PMO ' , 'POC export ', 'molC/m2/s ' 278 pisdia2d(6) = 'PMO2 ' , 'GOC export ', 'molC/m2/s ' 279 pisdia2d(7) = 'ExpFe1 ' , 'Nano iron export ', 'molFe/m2/s ' 280 pisdia2d(8) = 'ExpFe2 ' , 'Diatoms iron export ', 'molFe/m2/s ' 281 pisdia2d(9) = 'ExpSi ' , 'Silicate export ', 'molSi/m2/s ' 282 pisdia2d(10) = 'ExpCaCO3 ' , 'Calcite export ', 'molC/m2/s ' 283 pisdia2d(11) = 'heup ' , 'euphotic layer depth ', 'm ' 284 pisdia2d(12) = 'Fedep ' , 'Iron dep ', 'molFe/m2/s ' 285 pisdia2d(13) = 'Nfix ' , 'Nitrogen Fixation ', 'molN/m2/s ' 286 pisdia3d(1) = 'PH ' , 'PH ', '- ' 287 pisdia3d(2) = 'CO3 ' , 'Bicarbonates ', 'mol/l ' 288 pisdia3d(3) = 'CO3sat ' , 'CO3 saturation ', 'mol/l ' 289 pisdia3d(4) = 'PAR ' , 'light penetration ', 'W/m2 ' 290 pisdia3d(5) = 'PPPHY ' , 'Primary production of nanophyto ', 'molC/m3/s ' 291 pisdia3d(6) = 'PPPHY2 ' , 'Primary production of diatoms ', 'molC/m3/s ' 292 pisdia3d(7) = 'PPNEWN ' , 'New Primary production of nano ', 'molC/m3/s ' 293 pisdia3d(8) = 'PPNEWD ' , 'New Primary production of diat ', 'molC/m3/s ' 294 pisdia3d(9) = 'PBSi ' , 'Primary production of Si diatoms ', 'molSi/m3/s ' 295 pisdia3d(10) = 'PFeN ' , 'Primary production of nano iron ', 'molFe/m3/s ' 296 pisdia3d(11) = 'PFeD ' , 'Primary production of diatoms iron', 'molFe/m3/s ' 297 / 298 !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' 435 !----------------------------------------------------------------------- 299 436 &nampisdmp ! Damping 300 ! ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,437 !----------------------------------------------------------------------- 301 438 ln_pisdmp = .true. ! Relaxation fo some tracers to a mean value 302 439 nn_pisdmp = 5475 ! Frequency of Relaxation 303 440 / 304 ! '''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''441 !----------------------------------------------------------------------- 305 442 &nampismass ! Mass conservation 306 ! ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,443 !----------------------------------------------------------------------- 307 444 ln_check_mass = .false. ! Check mass conservation 308 445 / … … 317 454 !! 7 - general coefficients (namlobrat) 318 455 !! 8 - optical parameters (namlobopt) 319 320 !! 10 - biological diagnostics trends (namlobdbi)321 456 !>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> 322 ! '''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''457 !----------------------------------------------------------------------- 323 458 &namlobphy ! biological parameters for phytoplankton 324 ! ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,459 !----------------------------------------------------------------------- 325 460 tmumax = 1.21e-5 ! maximal phytoplankton growth rate [s-1] 326 461 rgamma = 0.05 ! phytoplankton exudation fraction [%] … … 329 464 aki = 33. ! light photosynthesis half saturation constant[W/m2] 330 465 / 331 ! '''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''466 !----------------------------------------------------------------------- 332 467 &namlobnut ! biological parameters for nutrients 333 ! ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,468 !----------------------------------------------------------------------- 334 469 akno3 = 0.7 ! nitrate limitation half-saturation value [mmol/m3] 335 470 aknh4 = 0.001 ! ammonium limitation half-saturation value [mmol/m3] … … 337 472 psinut = 3. ! inhibition of nitrate uptake by ammonium 338 473 / 339 ! '''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''474 !----------------------------------------------------------------------- 340 475 &namlobzoo ! biological parameters for zooplankton 341 ! ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,476 !----------------------------------------------------------------------- 342 477 rppz = 0.8 ! zooplankton nominal preference for phytoplancton food [%] 343 478 taus = 9.26E-6 ! specific zooplankton maximal grazing rate [s-1] … … 351 486 tmminz = 2.31e-6 ! minimal zooplankton mortality rate [(mmolN/m3)-1 d-1] 352 487 / 353 ! '''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''488 !----------------------------------------------------------------------- 354 489 &namlobdet ! biological parameters for detritus 355 ! ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,490 !----------------------------------------------------------------------- 356 491 taudn = 5.80e-7 ! detritus breakdown rate [0.1/86400 s-1=10 days] 357 492 fdetlab = 0. ! NH4 fraction of detritus dissolution 358 493 / 359 ! '''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''494 !----------------------------------------------------------------------- 360 495 &namlobdom ! biological parameters for DOM 361 ! ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,496 !----------------------------------------------------------------------- 362 497 taudomn = 6.43e-8 ! DOM breakdown rate [s-1] 363 498 ! ! slow remineralization rate of semi-labile dom to nh4 (1 month) 364 499 / 365 ! '''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''500 !----------------------------------------------------------------------- 366 501 &namlobsed ! parameters from aphotic layers to sediment 367 ! ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,502 !----------------------------------------------------------------------- 368 503 sedlam = 3.86e-7 ! time coefficient of POC remineralization in sediments [s-1] 369 504 sedlostpoc = 0. ! mass of POC lost in sediments … … 371 506 xhr = -0.858 ! coeff for martin''s remineralisation profile 372 507 / 373 ! '''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''508 !----------------------------------------------------------------------- 374 509 &namlobrat ! general coefficients 375 ! ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,510 !----------------------------------------------------------------------- 376 511 rcchl = 60. ! Carbone/Chlorophyl ratio [mgC.mgChla-1] 377 512 redf = 6.56 ! redfield ratio (C:N) for phyto 378 513 reddom = 6.56 ! redfield ratio (C:N) for DOM 379 514 / 380 ! '''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''515 !----------------------------------------------------------------------- 381 516 &namlobopt ! optical parameters 382 ! ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,517 !----------------------------------------------------------------------- 383 518 xkg0 = 0.0232 ! green absorption coefficient of water 384 519 xkr0 = 0.225 ! red absorption coefficent of water … … 389 524 rpig = 0.7 ! chla/chla+pheo ratio 390 525 / 391 !'''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''392 &nampisdbi ! biological diagnostics trends393 !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,394 ! ! 2D bio diagnostics units : mmole/m2/s ("key_trdmld_trc")395 ! ! name ! title of the field ! units !396 pisdiabio(1) = 'NO3PHY' , 'Flux from NO3 to PHY ', 'mmole/m3/s'397 pisdiabio(2) = 'NH4PHY' , 'Flux from NH4 to PHY ', 'mmole/m3/s'398 pisdiabio(3) = 'PHYNH4' , 'Flux from PHY to NH4 ', 'mmole/m3/s'399 pisdiabio(4) = 'PHYDOM' , 'Flux from PHY to DOM ', 'mmole/m3/s'400 pisdiabio(5) = 'PHYZOO' , 'Flux from PHY to ZOO ', 'mmole/m3/s'401 pisdiabio(6) = 'PHYDET' , 'Flux from PHY to DET ', 'mmole/m3/s'402 pisdiabio(7) = 'DETZOO' , 'Flux from DET to ZOO ', 'mmole/m3/s'403 pisdiabio(8) = 'DETSED' , 'Flux from DET to SED ', 'mmole/m3/s'404 pisdiabio(9) = 'ZOODET' , 'Flux from ZOO to DET ', 'mmole/m3/s'405 pisdiabio(10) = 'ZOOBOD' , 'Zooplankton closure ', 'mmole/m3/s'406 pisdiabio(11) = 'ZOONH4' , 'Flux from ZOO to NH4 ', 'mmole/m3/s'407 pisdiabio(12) = 'ZOODOM' , 'Flux from ZOO to DOM ', 'mmole/m3/s'408 pisdiabio(13) = 'NH4NO3' , 'Flux from NH4 to NO3 ', 'mmole/m3/s'409 pisdiabio(14) = 'DOMNH4' , 'Flux from DOM to NH4 ', 'mmole/m3/s'410 pisdiabio(15) = 'DETNH4' , 'Flux from DET to NH4 ', 'mmole/m3/s'411 pisdiabio(16) = 'DETDOM' , 'Flux from DET to DOM ', 'mmole/m3/s'412 pisdiabio(17) = 'SEDNO3' , 'NO3 remineralization from SED', 'mmole/m3/s'413 /
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