Changeset 8442 for branches/UKMO/dev_r5518_GO6_package/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_medusa_fin.F90
- Timestamp:
- 2017-08-17T13:39:18+02:00 (7 years ago)
- File:
-
- 1 edited
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branches/UKMO/dev_r5518_GO6_package/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_medusa_fin.F90
r8441 r8442 51 51 zn_sed_c, zn_sed_ca, zn_sed_fe, & 52 52 zn_sed_n, zn_sed_si 53 USE trc, ONLY: ctrc2d, ctrc3d, ln_diatrc, & 54 med_diag, nittrc000, & 55 trbio, trc2d, trc3d 53 USE trc, ONLY: med_diag, nittrc000 56 54 USE trcnam_trp, ONLY: ln_trcadv_cen2, ln_trcadv_tvd 57 55 … … 100 98 zn_sed_ca(:,:) = za_sed_ca(:,:) 101 99 endif 102 IF( ln_diatrc ) THEN103 DO jj = 2,jpjm1104 DO ji = 2,jpim1105 trc2d(ji,jj,131) = za_sed_n(ji,jj)106 trc2d(ji,jj,132) = za_sed_fe(ji,jj)107 trc2d(ji,jj,133) = za_sed_c(ji,jj)108 trc2d(ji,jj,134) = za_sed_si(ji,jj)109 trc2d(ji,jj,135) = za_sed_ca(ji,jj)110 ENDDO111 ENDDO112 !! AXY (07/07/15): temporary hijacking113 # if defined key_roam114 !! trc2d(:,:,126) = zn_dms_chn(:,:)115 !! trc2d(:,:,127) = zn_dms_chd(:,:)116 !! trc2d(:,:,128) = zn_dms_mld(:,:)117 !! trc2d(:,:,129) = zn_dms_qsr(:,:)118 !! trc2d(:,:,130) = zn_dms_din(:,:)119 # endif120 ENDIF121 100 !! 122 101 if (ibenthic.eq.2) then … … 238 217 ENDIF 239 218 endif 240 219 241 220 # if defined key_debug_medusa 242 221 !! AXY (12/07/17) … … 279 258 ENDIF 280 259 ENDDO 281 ENDDO 260 ENDDO 282 261 !! silicon 283 262 DO jj = 2,jpjm1 … … 292 271 ENDIF 293 272 ENDDO 294 ENDDO 273 ENDDO 295 274 !! carbon 296 275 DO jj = 2,jpjm1 … … 306 285 ENDIF 307 286 ENDDO 308 ENDDO 287 ENDDO 309 288 !! alkalinity 310 289 DO jj = 2,jpjm1 … … 319 298 ENDIF 320 299 ENDDO 321 ENDDO 300 ENDDO 322 301 # endif 323 324 IF( ln_diatrc ) THEN 325 !!----------------------------------------------------------------- 326 !! Output several accumulated diagnostics 327 !! - biomass-average phytoplankton limitation terms 328 !! - integrated tendency terms 329 !!----------------------------------------------------------------- 330 !! 331 DO jj = 2,jpjm1 332 DO ji = 2,jpim1 333 !! non-diatom phytoplankton limitations 334 trc2d(ji,jj,25) = trc2d(ji,jj,25) / MAX(ftot_pn(ji,jj), rsmall) 335 trc2d(ji,jj,26) = trc2d(ji,jj,26) / MAX(ftot_pn(ji,jj), rsmall) 336 trc2d(ji,jj,27) = trc2d(ji,jj,27) / MAX(ftot_pn(ji,jj), rsmall) 337 !! diatom phytoplankton limitations 338 trc2d(ji,jj,28) = trc2d(ji,jj,28) / MAX(ftot_pd(ji,jj), rsmall) 339 trc2d(ji,jj,29) = trc2d(ji,jj,29) / MAX(ftot_pd(ji,jj), rsmall) 340 trc2d(ji,jj,30) = trc2d(ji,jj,30) / MAX(ftot_pd(ji,jj), rsmall) 341 trc2d(ji,jj,31) = trc2d(ji,jj,31) / MAX(ftot_pd(ji,jj), rsmall) 342 trc2d(ji,jj,32) = trc2d(ji,jj,32) / MAX(ftot_pd(ji,jj), rsmall) 343 !! tendency terms 344 trc2d(ji,jj,76) = fflx_n(ji,jj) 345 trc2d(ji,jj,77) = fflx_si(ji,jj) 346 trc2d(ji,jj,78) = fflx_fe(ji,jj) 347 !! Integrated biomass. 348 !! integrated non-diatom phytoplankton 349 trc2d(ji,jj,79) = ftot_pn(ji,jj) 350 !! integrated diatom phytoplankton 351 trc2d(ji,jj,80) = ftot_pd(ji,jj) 352 !! Integrated microzooplankton 353 trc2d(ji,jj,217) = ftot_zmi(ji,jj) 354 !! Integrated mesozooplankton 355 trc2d(ji,jj,218) = ftot_zme(ji,jj) 356 !! Integrated slow detritus, nitrogen 357 trc2d(ji,jj,219) = ftot_det(ji,jj) 358 !! Integrated slow detritus, carbon 359 trc2d(ji,jj,220) = ftot_dtc(ji,jj) 360 # if defined key_roam 361 !! The balance of nitrogen production/consumption. 362 !! integrated nitrogen production 363 trc2d(ji,jj,111) = fnit_prod(ji,jj) 364 !! integrated nitrogen consumption 365 trc2d(ji,jj,112) = fnit_cons(ji,jj) 366 !! The balance of carbon production/consumption. 367 !! integrated carbon production 368 trc2d(ji,jj,113) = fcar_prod(ji,jj) 369 !! integrated carbon consumption 370 trc2d(ji,jj,114) = fcar_cons(ji,jj) 371 !! The balance of oxygen production/consumption. 372 !! integrated oxygen production 373 trc2d(ji,jj,115) = foxy_prod(ji,jj) 374 !! integrated oxygen consumption 375 trc2d(ji,jj,116) = foxy_cons(ji,jj) 376 !! integrated unrealised oxygen consumption 377 trc2d(ji,jj,117) = foxy_anox(ji,jj) 378 # endif 379 ENDDO 380 ENDDO 381 382 # if defined key_roam 383 # if defined key_axy_nancheck 384 !!--------------------------------------------------------------- 385 !! Check for NaNs in diagnostic outputs 386 !!--------------------------------------------------------------- 387 !! 388 !! 2D diagnostics 389 DO jn = 1,150 390 fq0 = SUM(trc2d(:,:,jn)) 391 !! AXY (30/01/14): "isnan" problem on HECTOR 392 !! if (fq0 /= fq0 ) then 393 if ( ieee_is_nan( fq0 ) ) then 394 !! there's a NaN here 395 if (lwp) write(numout,*) & 396 'NAN detected in 2D diagnostic field', jn, 'at time', & 397 kt, 'at position:' 398 DO jj = 1,jpj 399 DO ji = 1,jpi 400 if ( ieee_is_nan( trc2d(ji,jj,jn) ) ) then 401 if (lwp) write (numout,'(a,3i6)') 'NAN-CHECK', & 402 ji, jj, jn 403 endif 404 ENDDO 405 ENDDO 406 CALL ctl_stop( 'trcbio_medusa, NAN in 2D diagnostic field' ) 407 endif 408 ENDDO 409 !! 410 !! 3D diagnostics 411 DO jn = 1,5 412 fq0 = SUM(trc3d(:,:,:,jn)) 413 !! AXY (30/01/14): "isnan" problem on HECTOR 414 !! if (fq0 /= fq0 ) then 415 if ( ieee_is_nan( fq0 ) ) then 416 !! there's a NaN here 417 if (lwp) write(numout,*) & 418 'NAN detected in 3D diagnostic field', jn, 'at time', & 419 kt, 'at position:' 420 DO jk = 1,jpk 421 DO jj = 1,jpj 422 DO ji = 1,jpi 423 if ( ieee_is_nan( trc3d(ji,jj,jk,jn) ) ) then 424 if (lwp) write (numout,'(a,4i6)') 'NAN-CHECK', & 425 ji, jj, jk, jn 426 endif 427 ENDDO 428 ENDDO 429 ENDDO 430 CALL ctl_stop( 'trcbio_medusa, NAN in 3D diagnostic field' ) 431 endif 432 ENDDO 433 CALL flush(numout) 434 # endif 435 # endif 436 437 !!---------------------------------------------------------------- 438 !! Don't know what this does; belongs to someone else ... 439 !!---------------------------------------------------------------- 440 !! 441 !! Lateral boundary conditions on trc2d 442 DO jn=1,jp_medusa_2d 443 CALL lbc_lnk(trc2d(:,:,jn),'T',1. ) 444 ENDDO 445 446 !! Lateral boundary conditions on trc3d 447 DO jn=1,jp_medusa_3d 448 CALL lbc_lnk(trc3d(:,:,1,jn),'T',1. ) 449 ENDDO 450 451 452 # if defined key_axy_nodiag 453 !!---------------------------------------------------------------- 454 !! Blank diagnostics as a NaN-trap 455 !!---------------------------------------------------------------- 456 !! 457 !! blank 2D diagnostic array 458 trc2d(:,:,:) = 0.e0 459 !! 460 !! blank 3D diagnostic array 461 trc3d(:,:,:,:) = 0.e0 462 # endif 463 464 465 !!---------------------------------------------------------------- 466 !! Add in XML diagnostics stuff 467 !!---------------------------------------------------------------- 468 !! 469 !! ** 2D diagnostics 470 DO jn=1,jp_medusa_2d 471 CALL iom_put(TRIM(ctrc2d(jn)), trc2d(:,:,jn)) 472 END DO 473 !! AXY (17/02/14): don't think I need this if I modify the above for 474 !! all diagnostics 475 !! # if defined key_roam 476 !! DO jn=91,jp_medusa_2d 477 !! CALL iom_put(TRIM(ctrc2d(jn)), trc2d(:,:,jn)) 478 !! END DO 479 !! # endif 480 !! 481 !! ** 3D diagnostics 482 DO jn=1,jp_medusa_3d 483 CALL iom_put(TRIM(ctrc3d(jn)), trc3d(:,:,:,jn)) 484 END DO 485 !! AXY (17/02/14): don't think I need this if I modify the above for 486 !! all diagnostics 487 !! # if defined key_roam 488 !! CALL iom_put(TRIM(ctrc3d(5)), trc3d(:,:,:,5)) 489 !! # endif 490 491 492 ELSE IF( lk_iomput .AND. .NOT. ln_diatrc ) THEN 302 493 303 !!!--------------------------------------------------------------- 494 304 !! Add very last diag calculations … … 529 339 !! ** 2D diagnostics 530 340 # if defined key_debug_medusa 531 IF (lwp) write (numout,*) ' trc_bio_medusa: export all diag.'341 IF (lwp) write (numout,*) 'bio_medusa_fin: export all diag kt = ', kt 532 342 CALL flush(numout) 533 343 # endif … … 1181 991 DEALLOCATE( zw2d ) 1182 992 1183 ENDIF ! end of ln_diatrc option1184 1185 993 END SUBROUTINE bio_medusa_fin 1186 994
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