Index: /NEMO/trunk/cfgs/AGRIF_ICE/EXPREF/1_namelist_cfg
===================================================================
--- /NEMO/trunk/cfgs/AGRIF_ICE/EXPREF/1_namelist_cfg	(revision 9769)
+++ /NEMO/trunk/cfgs/AGRIF_ICE/EXPREF/1_namelist_cfg	(revision 9770)
@@ -1,6 +1,7 @@
 !!>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
-!! NEMO/OPA  Configuration namelist : overwrite default values defined in SHARED/1_namelist_ref
+!! NEMO/OPA  Configuration namelist : overwrite some defaults values defined in SHARED/namelist_ref
 !!>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
-!                         AGRIF ICE configuration                      !
+!                       ORCA2 - IC3 configuration                      !
+
 !!======================================================================
 !!              ***  Domain & Run management namelists  ***           !!
@@ -12,7 +13,4 @@
 !!   namtsd       data: temperature & salinity                          (default: OFF)
 !!   namcrs       coarsened grid (for outputs and/or TOP)               (ln_crs =T)
-!!   namc1d       1D configuration options                              ("key_c1d")
-!!   namc1d_dyndmp 1D newtonian damping applied on currents             ("key_c1d")
-!!   namc1d_uvd   1D data (currents)                                    ("key_c1d")
 !!======================================================================
 !
@@ -20,16 +18,15 @@
 &namrun        !   parameters of the run
 !-----------------------------------------------------------------------
-   cn_exp      = "Nordic"  !  experience name 
-   nn_it000    =    1      !  first time step
-   nn_itend    =   80      !  last  time step
-   nn_istate   =      0    !  output the initial state (1) or not (0)
-   ln_clobber  = .true.    !  clobber (overwrite) an existing file
-/
-!-----------------------------------------------------------------------
-&namdom        !   space and time domain
+   cn_exp      =  "ORCA2"  !  experience name
+   nn_it000    =       1   !  first time step
+   nn_itend    =      75   !  last  time step (std 5475)
+   nn_istate   =       0   !  output the initial state (1) or not (0)
+/
+!-----------------------------------------------------------------------
+&namdom        !   time and space domain
 !-----------------------------------------------------------------------
    ln_linssh   = .false.   !  =T  linear free surface  ==>>  model level are fixed in time
    !
-   rn_rdt      = 1440.     !  time step for the dynamics (and tracer if nn_acc=0)
+   rn_rdt      = 5760.     !  time step for the dynamics and tracer
 /
 !-----------------------------------------------------------------------
@@ -37,5 +34,8 @@
 !-----------------------------------------------------------------------
    ln_read_cfg = .true.    !  (=T) read the domain configuration file
-      cn_domcfg = "ORCA_R05_zps_domcfg_agrif"    ! domain configuration filename
+      cn_domcfg = "ORCA_R2_zps_domcfg_agrif"    ! domain configuration filename
+      !
+      ln_closea    = .false.    !  F => suppress closed seas (defined by closea_mask field) 
+      !                         !       from the bathymetry at runtime.
 /
 !-----------------------------------------------------------------------
@@ -44,5 +44,5 @@
    !                       ! =T  read T-S fields for:
    ln_tsd_init = .true.          !  ocean initialisation
-   ln_tsd_dmp  = .false.         !  T-S restoring   (see namtra_dmp)
+   ln_tsd_dmp  = .true.          !  T-S restoring   (see namtra_dmp)
 
    cn_dir = './'     !  root directory for the T-S data location
@@ -53,4 +53,5 @@
    sn_sal = 'data_1m_salinity_nomask'             ,     -1      ,'vosaline',   .true.    , .true. , 'yearly'  ,    ''    ,    ''    ,    ''
 /
+
 !!======================================================================
 !!            ***  Surface Boundary Condition namelists  ***          !!
@@ -75,12 +76,14 @@
 !-----------------------------------------------------------------------
    nn_fsbc     = 1         !  frequency of SBC module call
+                           !     (also = the frequency of sea-ice & iceberg model call)
                      ! Type of air-sea fluxes 
    ln_blk      = .true.    !  Bulk formulation                          (T => fill namsbc_blk )
                      ! Sea-ice :
-   nn_ice      = 2         !  =0   Use SI3 model
+   nn_ice      = 2         !  =2 or 3 automatically for LIM3 or CICE    ("key_lim3" or "key_cice")
+                           !          except in AGRIF zoom where it has to be specified
                      ! Misc. options of sbc : 
    ln_traqsr   = .true.    !  Light penetration in the ocean            (T => fill namtra_qsr)
-   ln_rnf      = .false.   !  runoffs                                   (T => fill namsbc_rnf)
-   ln_ssr      = .false.   !  Sea Surface Restoring on T and/or S       (T => fill namsbc_ssr)
+   ln_rnf      = .true.    !  runoffs                                   (T => fill namsbc_rnf)
+   ln_ssr      = .true.    !  Sea Surface Restoring on T and/or S       (T => fill namsbc_ssr)
    nn_fwb      = 0         !  FreshWater Budget: =0 unchecked
 /
@@ -89,21 +92,20 @@
 !-----------------------------------------------------------------------
    !                    !  bulk algorithm :
-   ln_NCAR     = .true.    ! "NCAR"      algorithm   (Large and Yeager 2008)
-
-   cn_dir      = './'      !  root directory for the bulk data location
+   ln_NCAR    = .true.     ! "NCAR"      algorithm   (Large and Yeager 2008)
+
+   cn_dir = './'  !  root directory for the bulk data location
    !___________!_________________________!___________________!___________!_____________!________!___________!______________________________________!__________!_______________!
    !           !  file name              ! frequency (hours) ! variable  ! time interp.!  clim  ! 'yearly'/ !          weights filename            ! rotation ! land/sea mask !
    !           !                         !  (if <0  months)  !   name    !   (logical) !  (T/F) ! 'monthly' !                                      ! pairing  !    filename   !
-   sn_wndi     = 'u_10.15JUNE2009_fill'       ,    6         , 'U_10_MOD',   .false.   , .true. , 'yearly'  , 'weights_core2_nordic1_bicub.nc'     , 'Uwnd'   , ''
-   sn_wndj     = 'v_10.15JUNE2009_fill'       ,    6         , 'V_10_MOD',   .false.   , .true. , 'yearly'  , 'weights_core2_nordic1_bicub.nc'     , 'Vwnd'   , ''
-   sn_qsr      = 'ncar_rad.15JUNE2009_fill'   ,   24         , 'SWDN_MOD',   .false.   , .true. , 'yearly'  , 'weights_core2_nordic1_bilin.nc'     , ''       , ''
-   sn_qlw      = 'ncar_rad.15JUNE2009_fill'   ,   24         , 'LWDN_MOD',   .false.   , .true. , 'yearly'  , 'weights_core2_nordic1_bilin.nc'     , ''       , ''
-   sn_tair     = 't_10.15JUNE2009_fill'       ,    6         , 'T_10_MOD',   .false.   , .true. , 'yearly'  , 'weights_core2_nordic1_bilin.nc'     , ''       , ''
-   sn_humi     = 'q_10.15JUNE2009_fill'       ,    6         , 'Q_10_MOD',   .false.   , .true. , 'yearly'  , 'weights_core2_nordic1_bilin.nc'     , ''       , ''
-   sn_prec     = 'ncar_precip.15JUNE2009_fill',   -1         , 'PRC_MOD1',   .false.   , .true. , 'yearly'  , 'weights_core2_nordic1_bilin.nc'     , ''       , ''
-   sn_snow     = 'ncar_precip.15JUNE2009_fill',   -1         , 'SNOW'    ,   .false.   , .true. , 'yearly'  , 'weights_core2_nordic1_bilin.nc'  , ''       , ''
-   sn_slp      = 'slp.15JUNE2009_fill'        ,    6         , 'SLP'     ,   .false.   , .true. , 'yearly'  , 'weights_core2_nordic1_bilin.nc'  , ''       , ''
-   sn_tdif     = 'taudif_core'                ,   24         , 'taudif'  ,   .false.   , .true. , 'yearly'  , 'weights_core2_nordic1_bilin.nc'  , ''       , ''
-
+   sn_wndi     = 'u_10.15JUNE2009_fill'       ,    6         , 'U_10_MOD',   .false.   , .true. , 'yearly'  , 'weights_core_orca2_bicubic_noc.nc'  , 'Uwnd'   , ''
+   sn_wndj     = 'v_10.15JUNE2009_fill'       ,    6         , 'V_10_MOD',   .false.   , .true. , 'yearly'  , 'weights_core_orca2_bicubic_noc.nc'  , 'Vwnd'   , ''
+   sn_qsr      = 'ncar_rad.15JUNE2009_fill'   ,   24         , 'SWDN_MOD',   .false.   , .true. , 'yearly'  , 'weights_core_orca2_bilinear_noc.nc' , ''       , ''
+   sn_qlw      = 'ncar_rad.15JUNE2009_fill'   ,   24         , 'LWDN_MOD',   .false.   , .true. , 'yearly'  , 'weights_core_orca2_bilinear_noc.nc' , ''       , ''
+   sn_tair     = 't_10.15JUNE2009_fill'       ,    6         , 'T_10_MOD',   .false.   , .true. , 'yearly'  , 'weights_core_orca2_bilinear_noc.nc' , ''       , ''
+   sn_humi     = 'q_10.15JUNE2009_fill'       ,    6         , 'Q_10_MOD',   .false.   , .true. , 'yearly'  , 'weights_core_orca2_bilinear_noc.nc' , ''       , ''
+   sn_prec     = 'ncar_precip.15JUNE2009_fill',   -1         , 'PRC_MOD1',   .false.   , .true. , 'yearly'  , 'weights_core_orca2_bilinear_noc.nc' , ''       , ''
+   sn_snow     = 'ncar_precip.15JUNE2009_fill',   -1         , 'SNOW'    ,   .false.   , .true. , 'yearly'  , 'weights_core_orca2_bilinear_noc.nc' , ''       , ''
+   sn_slp      = 'slp.15JUNE2009_fill'        ,    6         , 'SLP'     ,   .false.   , .true. , 'yearly'  , 'weights_core_orca2_bilinear_noc.nc' , ''       , ''
+   sn_tdif     = 'taudif_core'                ,   24         , 'taudif'  ,   .false.   , .true. , 'yearly'  , 'weights_core_orca2_bilinear_noc.nc' , ''       , ''
 /
 !-----------------------------------------------------------------------
@@ -115,19 +117,34 @@
    nn_chldta   =      1       !  RGB : Chl data (=1) or cst value (=0)
 
-   cn_dir      = './'      !  root directory for the chlorophyl data location
-   !___________!_________________________!___________________!___________!_____________!________!___________!______________________________________!__________!_______________!
-   !           !  file name              ! frequency (hours) ! variable  ! time interp.!  clim  ! 'yearly'/ !          weights filename            ! rotation ! land/sea mask !
-   !           !                         !  (if <0  months)  !   name    !   (logical) !  (T/F) ! 'monthly' !                                      ! pairing  !    filename   !
-   sn_chl      ='chlorophyll'            ,        -1         , 'CHLA'    ,   .true.    , .true. , 'yearly'  , ''                                   , ''       , ''
+   cn_dir = './'  !  root directory for the chlorophyl data location
+   !___________!_________________________!___________________!___________!_____________!________!___________!__________________!__________!_______________!
+   !           !  file name              ! frequency (hours) ! variable  ! time interp.!  clim  ! 'yearly'/ ! weights filename ! rotation ! land/sea mask !
+   !           !                         !  (if <0  months)  !   name    !   (logical) !  (T/F) ! 'monthly' !                  ! pairing  !    filename   !
+   sn_chl      ='chlorophyll'            ,        -1         , 'CHLA'    ,   .true.    , .true. , 'yearly'  , ''               , ''       , ''
 /
 !-----------------------------------------------------------------------
 &namsbc_rnf    !   runoffs                                              (ln_rnf =T)
 !-----------------------------------------------------------------------
-   !  not used in this zoom
+   ln_rnf_mouth= .true.    !  specific treatment at rivers mouths
+      rn_hrnf     =  15.e0    !  depth over which enhanced vertical mixing is used    (ln_rnf_mouth=T)
+      rn_avt_rnf  =   1.e-3   !  value of the additional vertical mixing coef. [m2/s] (ln_rnf_mouth=T)
+
+   cn_dir = './'  !  root directory for the location of the runoff files
+   !___________!_____________!___________________!___________!_____________!_________!___________!__________!__________!_______________!
+   !           !  file name  ! frequency (hours) ! variable  ! time interp. !  clim  ! 'yearly'/ ! weights  ! rotation ! land/sea mask !
+   !           !             !  (if <0  months)  !   name    !   (logical)  !  (T/F) ! 'monthly' ! filename ! pairing  ! filename      !
+   sn_rnf      = 'runoff_core_monthly',    -1    , 'sorunoff',   .true.     , .true. , 'yearly'  , ''       , ''       , ''
+   sn_cnf      = 'runoff_core_monthly',     0    , 'socoefr0',   .false.    , .true. , 'yearly'  , ''       , ''       , ''
+   sn_s_rnf    = 'runoffs'            ,    24    , 'rosaline',   .true.     , .true. , 'yearly'  , ''       , ''       , ''
+   sn_t_rnf    = 'runoffs'            ,    24    , 'rotemper',   .true.     , .true. , 'yearly'  , ''       , ''       , ''
+   sn_dep_rnf  = 'runoffs'            ,     0    , 'rodepth' ,   .false.    , .true. , 'yearly'  , ''       , ''       , ''
 /
 !-----------------------------------------------------------------------
 &namsbc_ssr    !   surface boundary condition : sea surface restoring   (ln_ssr =T)
 !-----------------------------------------------------------------------
-   !  not used in this zoom
+   nn_sssr     =     2     !  add a damping term to the surface freshwater flux
+      rn_deds     =  -166.67  !  magnitude of the damping on salinity   [mm/day]
+      ln_sssr_bnd =  .true.   !  flag to bound erp term (associated with nn_sssr=2)
+      rn_sssr_bnd =   4.e0    !  ABS(Max/Min) value of the damping erp term [mm/day]
 /
 !-----------------------------------------------------------------------
@@ -135,6 +152,7 @@
 !-----------------------------------------------------------------------
    !  iceberg floats are not currently available with AGRIF
-   !     ===>>  forced deactivation in icbini.F90 
-/
+   !     ===>>  forced deactivation in icbini.F90
+/
+
 !!======================================================================
 !!               ***  Lateral boundary condition  ***                 !!
@@ -153,16 +171,19 @@
    rn_shlat    =    2.     !  no slip
 /
-!-----------------------------------------------------------------------
-&namagrif      !  AGRIF zoom                                            ("key_agrif")
-!-----------------------------------------------------------------------
-   ln_spc_dyn    = .true.  !  use 0 as special value for dynamics
-   rn_sponge_tra = 1440.   !  coefficient for tracer   sponge layer [m2/s]
-   rn_sponge_dyn = 1440.   !  coefficient for dynamics sponge layer [m2/s]
-   ln_chk_bathy  = .false. !  =T  check the parent bathymetry
-/
+
+!!======================================================================
+!!                ***  Top/Bottom boundary condition  ***             !!
+!!                                                                    !!
+!!   namdrg        top/bottom drag coefficient                          (default: NO selection)
+!!   namdrg_top    top    friction                                      (ln_OFF=F & ln_isfcav=T)
+!!   namdrg_bot    bottom friction                                      (ln_OFF=F)
+!!   nambbc        bottom temperature boundary condition                (default: OFF)
+!!   nambbl        bottom boundary layer scheme                         (default: OFF)
+!!======================================================================
+!
 !-----------------------------------------------------------------------
 &namdrg        !   top/bottom drag coefficient                          (default: NO selection)
 !-----------------------------------------------------------------------
-   ln_non_lin = .true.    !  non-linear  drag: Cd = Cd0 |U|
+   ln_non_lin = .true.     !  non-linear  drag: Cd = Cd0 |U|
 /
 !-----------------------------------------------------------------------
@@ -174,5 +195,11 @@
 !-----------------------------------------------------------------------
    ln_trabbc   = .true.    !  Apply a geothermal heating at the ocean bottom
-      nn_geoflx   =    1      !  geothermal heat flux: = 2 read variable flux [mW/m2]
+      nn_geoflx   =    2      !  geothermal heat flux: = 2 read variable flux [mW/m2]
+
+   cn_dir = './'  !  root directory for the geothermal data location
+   !___________!_________________________!___________________!___________!_____________!________!___________!__________________!__________!_______________!
+   !           !  file name              ! frequency (hours) ! variable  ! time interp.!  clim  ! 'yearly'/ ! weights filename ! rotation ! land/sea mask !
+   !           !                         !  (if <0  months)  !   name    !   (logical) !  (T/F) ! 'monthly' !                  ! pairing  !    filename   !
+   sn_qgh      ='geothermal_heating.nc'  ,       -12.        , 'heatflow',   .false.   , .true. , 'yearly'  ,   ''             ,   ''     ,   ''
 /
 !-----------------------------------------------------------------------
@@ -185,4 +212,5 @@
       rn_gambbl   =  10.      !  advective bbl coefficient                 [s]
 /
+
 !!======================================================================
 !!                        Tracer (T & S) namelists                    !!
@@ -204,6 +232,7 @@
 &namtra_adv    !   advection scheme for tracer                          (default: NO selection)
 !-----------------------------------------------------------------------
-   ln_traadv_ubs = .true. !  UBS scheme
-      nn_ubs_v   =  2            !  =2  , vertical 2nd order FCT / COMPACT 4th order
+   ln_traadv_fct = .true.     !  FCT scheme
+      nn_fct_h   =  2               !  =2/4, horizontal 2nd / 4th order 
+      nn_fct_v   =  2               !  =2/4, vertical   2nd / COMPACT 4th order 
 /
 !-----------------------------------------------------------------------
@@ -215,16 +244,36 @@
 &namtra_ldf    !   lateral diffusion scheme for tracers                 (default: NO selection)
 !-----------------------------------------------------------------------
-   ln_traldf_OFF   =  .true.  !           No operator (no explicit advection)
-/
-!-----------------------------------------------------------------------
-&namtra_eiv    !   eddy induced velocity param.                         (default: OFF)
-!-----------------------------------------------------------------------
-   !  not used in this zoom
+   !                       !  Operator type:
+   ln_traldf_lap   = .true.    !    laplacian operator
+   !                       !  Direction of action:
+   ln_traldf_iso   = .true.    !  iso-neutral (Standard operator)
+   !		       	         !  iso-neutral options:        
+   ln_traldf_msc   = .true.    !  Method of Stabilizing Correction      (both operators)
+   !                       !  Coefficients:
+   nn_aht_ijk_t    = 20        !  space/time variation of eddy coef
+      !                             !   = 20     aht = 1/2  Ud. max(e1,e2)
+      rn_Ud        = 0.018          !  lateral diffusive velocity [m/s] (nn_aht_ijk_t= 0, 10, 20, 30)
+      rn_Ld        = 200.e+3        !  lateral diffusive length   [m]   (nn_aht_ijk_t= 0, 10)
+/
+!-----------------------------------------------------------------------
+&namtra_eiv !   eddy induced velocity param.                            (default: OFF)
+!-----------------------------------------------------------------------
+   ln_ldfeiv     =.true.   ! use eddy induced velocity parameterization
+      !                        !  Coefficients:
+      nn_aei_ijk_t  = 21          ! space/time variation of the eiv coeficient
+      !                                !   = 21 F(i,j,t)  =Treguier et al. JPO 1997 formulation
+      !                           !  time invariant coefficients:  aei0 = 1/2  Ue*Le 
+      rn_Ue        = 0.03              !  lateral diffusive velocity [m/s] (nn_aht_ijk_t= 0, 10, 20, 30)
+      rn_Le        = 200.e+3           !  lateral diffusive length   [m]   (nn_aht_ijk_t= 0, 10)
+      !
+      ln_ldfeiv_dia =.true.   ! diagnose eiv stream function and velocities
 /
 !-----------------------------------------------------------------------
 &namtra_dmp    !   tracer: T & S newtonian damping                      (default: OFF)
 !-----------------------------------------------------------------------
-   !  not used in this zoom
-/
+   ln_tradmp   =  .true.   !  add a damping term (using resto.nc coef.)
+      nn_zdmp  =    0         !  vertical shape =0    damping throughout the water column
+/
+
 !!======================================================================
 !!                      ***  Dynamics namelists  ***                  !!
@@ -246,15 +295,17 @@
 &namdyn_adv    !   formulation of the momentum advection                (default: NO selection)
 !-----------------------------------------------------------------------
-   ln_dynadv_ubs = .true.  !  flux form - 3rd order UBS      scheme
+   ln_dynadv_vec = .true.  !  vector form - 2nd centered scheme
+     nn_dynkeg     = 0        ! grad(KE) scheme: =0   C2  ;  =1   Hollingsworth correction
 /
 !-----------------------------------------------------------------------
 &namdyn_vor    !   Vorticity / Coriolis scheme                          (default: NO selection)
 !-----------------------------------------------------------------------
-   ln_dynvor_ene = .true.  !  energy conserving scheme
+   ln_dynvor_een = .true.  !  energy & enstrophy scheme
+      nn_een_e3f = 0          ! =0   e3f = mean masked e3t divided by 4
 /
 !-----------------------------------------------------------------------
 &namdyn_hpg    !   Hydrostatic pressure gradient option                 (default: NO selection)
 !-----------------------------------------------------------------------
-   ln_hpg_sco  = .true.    !  s-coordinate (standard jacobian formulation)
+   ln_hpg_sco  = .true.   !  s-coordinate (standard jacobian formulation)
 /
 !-----------------------------------------------------------------------
@@ -266,6 +317,13 @@
 &namdyn_ldf    !   lateral diffusion on momentum                        (default: NO selection)
 !-----------------------------------------------------------------------
-   ln_dynldf_OFF =  .true.    !  No operator (i.e. no explicit diffusion)
-/
+   !                       !  Type of the operator :
+   ln_dynldf_lap =  .true.     !    laplacian operator
+   !                       !  Direction of action  :
+   ln_dynldf_lev =  .true.     !  iso-level
+   !                       !  Coefficient
+   nn_ahm_ijk_t  = -30         !  space/time variation of eddy coef
+   !                                !  =-30  read in eddy_viscosity_3D.nc
+/
+
 !!======================================================================
 !!                     vertical physics namelists                     !!
@@ -290,8 +348,4 @@
       rn_evd   =  100.           !  evd mixing coefficient [m2/s]
    !
-   ln_zdfddm   = .true.    ! double diffusive mixing
-      rn_avts  =    1.e-4     !  maximum avs (vertical mixing on salinity)
-      rn_hsbfr =    1.6       !  heat/salt buoyancy flux ratio
-   !
    !                       !  Coefficients
    rn_avm0     =   1.2e-4     !  vertical eddy viscosity   [m2/s]       (background Kz if ln_zdfcst=F)
@@ -303,5 +357,7 @@
 &namzdf_tke    !   turbulent eddy kinetic dependent vertical diffusion  (ln_zdftke =T)
 !-----------------------------------------------------------------------
-/
+      rn_eice     =   0       !  below sea ice: =0 ON ; =4 OFF when ice fraction > 1/4   
+/
+
 !!======================================================================
 !!                  ***  Diagnostics namelists  ***                   !!
@@ -320,4 +376,5 @@
 !!======================================================================
 !
+
 !!======================================================================
 !!               ***  Observation & Assimilation  ***                 !!
@@ -327,4 +384,5 @@
 !!======================================================================
 !
+
 !!======================================================================
 !!                  ***  Miscellaneous namelists  ***                 !!
@@ -335,4 +393,5 @@
 !!======================================================================
 !
+!
 !-----------------------------------------------------------------------
 &nammpp        !   Massively Parallel Processing                        ("key_mpp_mpi")
Index: /NEMO/trunk/cfgs/AGRIF_ICE/EXPREF/1_namelist_ice_cfg
===================================================================
--- /NEMO/trunk/cfgs/AGRIF_ICE/EXPREF/1_namelist_ice_cfg	(revision 9769)
+++ /NEMO/trunk/cfgs/AGRIF_ICE/EXPREF/1_namelist_ice_cfg	(revision 9770)
@@ -1,4 +1,4 @@
 !!>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
-!! SI3 namelist:  
+!! SI3 configuration namelist: Overwrites SHARED/namelist_ice_ref
 !!              1 - Generic parameters                 (nampar)
 !!              2 - Ice thickness discretization       (namitd)
Index: /NEMO/trunk/cfgs/AGRIF_ICE/EXPREF/2_namelist_cfg
===================================================================
--- /NEMO/trunk/cfgs/AGRIF_ICE/EXPREF/2_namelist_cfg	(revision 9769)
+++ /NEMO/trunk/cfgs/AGRIF_ICE/EXPREF/2_namelist_cfg	(revision 9770)
@@ -1,6 +1,7 @@
 !!>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
-!! NEMO/OPA  Configuration namelist : overwrite default values defined in SHARED/1_namelist_ref
+!! NEMO/OPA  Configuration namelist : overwrite some defaults values defined in SHARED/1_namelist_ref
 !!>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
-!                         AGRIF ICE configuration                      !
+!                       ORCA2 - SI3 configuration                      !
+
 !!======================================================================
 !!              ***  Domain & Run management namelists  ***           !!
@@ -12,7 +13,4 @@
 !!   namtsd       data: temperature & salinity                          (default: OFF)
 !!   namcrs       coarsened grid (for outputs and/or TOP)               (ln_crs =T)
-!!   namc1d       1D configuration options                              ("key_c1d")
-!!   namc1d_dyndmp 1D newtonian damping applied on currents             ("key_c1d")
-!!   namc1d_uvd   1D data (currents)                                    ("key_c1d")
 !!======================================================================
 !
@@ -22,5 +20,5 @@
    cn_exp      = "Nordic"  !  experience name 
    nn_it000    =    1      !  first time step
-   nn_itend    =  240      !  last  time step
+   nn_itend    =  300      !  last  time step
    nn_istate   =      0    !  output the initial state (1) or not (0)
    ln_clobber  = .true.    !  clobber (overwrite) an existing file
@@ -31,5 +29,5 @@
    ln_linssh   = .false.   !  =T  linear free surface  ==>>  model level are fixed in time
    !
-   rn_rdt      = 480.     !  time step for the dynamics (and tracer if nn_acc=0)
+   rn_rdt      = 1440.     !  time step for the dynamics (and tracer if nn_acc=0)
 /
 !-----------------------------------------------------------------------
@@ -37,5 +35,5 @@
 !-----------------------------------------------------------------------
    ln_read_cfg = .true.    !  (=T) read the domain configuration file
-      cn_domcfg = "ORCA_R017_zps_domcfg_agrif"    ! domain configuration filename
+      cn_domcfg = "ORCA_R05_zps_domcfg_agrif"    ! domain configuration filename
 /
 !-----------------------------------------------------------------------
@@ -53,4 +51,5 @@
    sn_sal = 'data_1m_salinity_nomask'             ,     -1      ,'vosaline',   .true.    , .true. , 'yearly'  ,    ''    ,    ''    ,    ''
 /
+
 !!======================================================================
 !!            ***  Surface Boundary Condition namelists  ***          !!
@@ -95,14 +94,14 @@
    !           !  file name              ! frequency (hours) ! variable  ! time interp.!  clim  ! 'yearly'/ !          weights filename            ! rotation ! land/sea mask !
    !           !                         !  (if <0  months)  !   name    !   (logical) !  (T/F) ! 'monthly' !                                      ! pairing  !    filename   !
-   sn_wndi     = 'u_10.15JUNE2009_fill'       ,    6         , 'U_10_MOD',   .false.   , .true. , 'yearly'  , 'weights_core2_nordic2_bicub.nc'     , 'Uwnd'   , ''
-   sn_wndj     = 'v_10.15JUNE2009_fill'       ,    6         , 'V_10_MOD',   .false.   , .true. , 'yearly'  , 'weights_core2_nordic2_bicub.nc'     , 'Vwnd'   , ''
-   sn_qsr      = 'ncar_rad.15JUNE2009_fill'   ,   24         , 'SWDN_MOD',   .false.   , .true. , 'yearly'  , 'weights_core2_nordic2_bilin.nc'     , ''       , ''
-   sn_qlw      = 'ncar_rad.15JUNE2009_fill'   ,   24         , 'LWDN_MOD',   .false.   , .true. , 'yearly'  , 'weights_core2_nordic2_bilin.nc'     , ''       , ''
-   sn_tair     = 't_10.15JUNE2009_fill'       ,    6         , 'T_10_MOD',   .false.   , .true. , 'yearly'  , 'weights_core2_nordic2_bilin.nc'     , ''       , ''
-   sn_humi     = 'q_10.15JUNE2009_fill'       ,    6         , 'Q_10_MOD',   .false.   , .true. , 'yearly'  , 'weights_core2_nordic2_bilin.nc'     , ''       , ''
-   sn_prec     = 'ncar_precip.15JUNE2009_fill',   -1         , 'PRC_MOD1',   .false.   , .true. , 'yearly'  , 'weights_core2_nordic2_bilin.nc'     , ''       , ''
-   sn_snow     = 'ncar_precip.15JUNE2009_fill',   -1         , 'SNOW'    ,   .false.   , .true. , 'yearly'  , 'weights_core2_nordic2_bilin.nc'     , ''       , ''
-   sn_slp      = 'slp.15JUNE2009_fill'        ,    6         , 'SLP'     ,   .false.   , .true. , 'yearly'  , 'weights_core2_nordic2_bilin.nc'     , ''       , ''
-   sn_tdif     = 'taudif_core'                ,   24         , 'taudif'  ,   .false.   , .true. , 'yearly'  , 'weights_core2_nordic2_bilin.nc'     , ''       , ''
+   sn_wndi     = 'u_10.15JUNE2009_fill'       ,    6         , 'U_10_MOD',   .false.   , .true. , 'yearly'  , 'weights_core2_nordic1_bicub.nc'     , 'Uwnd'   , ''
+   sn_wndj     = 'v_10.15JUNE2009_fill'       ,    6         , 'V_10_MOD',   .false.   , .true. , 'yearly'  , 'weights_core2_nordic1_bicub.nc'     , 'Vwnd'   , ''
+   sn_qsr      = 'ncar_rad.15JUNE2009_fill'   ,   24         , 'SWDN_MOD',   .false.   , .true. , 'yearly'  , 'weights_core2_nordic1_bilin.nc'     , ''       , ''
+   sn_qlw      = 'ncar_rad.15JUNE2009_fill'   ,   24         , 'LWDN_MOD',   .false.   , .true. , 'yearly'  , 'weights_core2_nordic1_bilin.nc'     , ''       , ''
+   sn_tair     = 't_10.15JUNE2009_fill'       ,    6         , 'T_10_MOD',   .false.   , .true. , 'yearly'  , 'weights_core2_nordic1_bilin.nc'     , ''       , ''
+   sn_humi     = 'q_10.15JUNE2009_fill'       ,    6         , 'Q_10_MOD',   .false.   , .true. , 'yearly'  , 'weights_core2_nordic1_bilin.nc'     , ''       , ''
+   sn_prec     = 'ncar_precip.15JUNE2009_fill',   -1         , 'PRC_MOD1',   .false.   , .true. , 'yearly'  , 'weights_core2_nordic1_bilin.nc'     , ''       , ''
+   sn_snow     = 'ncar_precip.15JUNE2009_fill',   -1         , 'SNOW'    ,   .false.   , .true. , 'yearly'  , 'weights_core2_nordic1_bilin.nc'  , ''       , ''
+   sn_slp      = 'slp.15JUNE2009_fill'        ,    6         , 'SLP'     ,   .false.   , .true. , 'yearly'  , 'weights_core2_nordic1_bilin.nc'  , ''       , ''
+   sn_tdif     = 'taudif_core'                ,   24         , 'taudif'  ,   .false.   , .true. , 'yearly'  , 'weights_core2_nordic1_bilin.nc'  , ''       , ''
 
 /
@@ -137,4 +136,5 @@
    !     ===>>  forced deactivation in icbini.F90 
 /
+
 !!======================================================================
 !!               ***  Lateral boundary condition  ***                 !!
@@ -157,7 +157,7 @@
 !-----------------------------------------------------------------------
    ln_spc_dyn    = .true.  !  use 0 as special value for dynamics
-   rn_sponge_tra =  480.   !  coefficient for tracer   sponge layer [m2/s]
-   rn_sponge_dyn =  480.   !  coefficient for dynamics sponge layer [m2/s]
-   ln_chk_bathy  = .false. !  =T  check the parent bathymetry
+   rn_sponge_tra = 1440.   !  coefficient for tracer   sponge layer [m2/s]
+   rn_sponge_dyn = 1440.   !  coefficient for dynamics sponge layer [m2/s]
+   ln_chk_bathy  = .true.  !  =T  check the parent bathymetry
 /
 !-----------------------------------------------------------------------
@@ -185,4 +185,5 @@
       rn_gambbl   =  10.      !  advective bbl coefficient                 [s]
 /
+
 !!======================================================================
 !!                        Tracer (T & S) namelists                    !!
@@ -227,4 +228,5 @@
    !  not used in this zoom
 /
+
 !!======================================================================
 !!                      ***  Dynamics namelists  ***                  !!
@@ -268,4 +270,5 @@
    ln_dynldf_OFF =  .true.    !  No operator (i.e. no explicit diffusion)
 /
+
 !!======================================================================
 !!                     vertical physics namelists                     !!
@@ -304,4 +307,5 @@
 !-----------------------------------------------------------------------
 /
+
 !!======================================================================
 !!                  ***  Diagnostics namelists  ***                   !!
@@ -320,4 +324,5 @@
 !!======================================================================
 !
+
 !!======================================================================
 !!               ***  Observation & Assimilation  ***                 !!
@@ -335,4 +340,5 @@
 !!======================================================================
 !
+!
 !-----------------------------------------------------------------------
 &nammpp        !   Massively Parallel Processing                        ("key_mpp_mpi")
Index: /NEMO/trunk/cfgs/AGRIF_ICE/EXPREF/3_context_nemo.xml
===================================================================
--- /NEMO/trunk/cfgs/AGRIF_ICE/EXPREF/3_context_nemo.xml	(revision 9770)
+++ /NEMO/trunk/cfgs/AGRIF_ICE/EXPREF/3_context_nemo.xml	(revision 9770)
@@ -0,0 +1,132 @@
+<!--
+ ============================================================================================== 
+    NEMO context
+============================================================================================== 
+-->
+<context id="3_nemo">
+<!-- $id$ -->
+    <variable_definition>
+    <!-- Year of time origin for NetCDF files; defaults to 1800 -->
+       <variable id="ref_year" type="int"   > 1800 </variable>
+       <variable id="rau0"     type="float" > 1026.0 </variable>
+       <variable id="cpocean"  type="float" > 3991.86795711963 </variable>
+       <variable id="convSpsu" type="float" > 0.99530670233846  </variable>
+       <variable id="rhoic"    type="float" > 917.0 </variable>
+       <variable id="rhosn"    type="float" > 330.0 </variable>
+       <variable id="missval"  type="float" > 1.e20 </variable>
+    </variable_definition>
+<!-- Fields definition -->
+    <field_definition src="./field_def_nemo-oce.xml"/>    <!--  NEMO ocean dynamics     -->
+    <field_definition src="./field_def_nemo-ice.xml"/>    <!--  NEMO sea-ice model      -->
+
+<!-- Files definition -->
+    <file_definition src="./file_def_nemo-oce.xml"/>     <!--  NEMO ocean dynamics      -->
+    <file_definition src="./file_def_nemo-ice.xml"/>     <!--  NEMO sea-ice model       -->
+    <!-- 
+============================================================================================================
+= grid definition = = DO NOT CHANGE =
+============================================================================================================
+    -->
+    
+    <axis_definition>
+      <axis id="deptht"  long_name="Vertical T levels"  unit="m" positive="down" />
+      <axis id="depthu"  long_name="Vertical U levels"  unit="m" positive="down" />
+      <axis id="depthv"  long_name="Vertical V levels"  unit="m" positive="down" />
+      <axis id="depthw"  long_name="Vertical W levels"  unit="m" positive="down" />
+      <axis id="nfloat"  long_name="Float number"       unit="-"                 />
+      <axis id="icbcla"  long_name="Iceberg class"      unit="1"                 />
+      <axis id="ncatice" long_name="Ice category"       unit="1"                 />
+      <axis id="iax_20C" long_name="20 degC isotherm"   unit="degC"              />
+      <axis id="iax_28C" long_name="28 degC isotherm"   unit="degC"              />
+    </axis_definition>
+ 
+    <domain_definition src="./domain_def_nemo.xml"/>
+  
+    <grid_definition>    
+
+        <!--  -->
+       <grid id="grid_T_2D" >
+         <domain id="grid_T" />
+       </grid>
+        <!--  -->
+       <grid id="grid_T_3D_ncatice" >
+         <domain id="grid_T" />
+         <axis id="ncatice" />
+       </grid>
+        <!--  -->
+       <grid id="grid_T_3D" >
+         <domain id="grid_T" />
+         <axis id="deptht" />
+       </grid>
+        <!--  -->
+       <grid id="grid_U_2D" >
+         <domain id="grid_U" />
+       </grid>
+        <!--  -->
+       <grid id="grid_U_3D" >
+         <domain id="grid_U" />
+         <axis id="depthu" />
+       </grid>
+        <!--  -->
+       <grid id="grid_V_2D" >
+         <domain id="grid_V" />
+       </grid>
+        <!--  -->
+       <grid id="grid_V_3D" >
+         <domain id="grid_V" />
+         <axis id="depthv" />
+       </grid>
+        <!--  -->
+       <grid id="grid_W_2D" >
+         <domain id="grid_W" />
+       </grid>
+        <!--  -->
+       <grid id="grid_W_3D" >
+         <domain id="grid_W" />
+         <axis id="depthw" />
+       </grid>
+        <!--  -->
+       <grid id="grid_1point" >
+         <domain domain_ref="1point"/>
+       </grid>
+        <!--  -->
+       <grid id="grid_T_nfloat" >
+         <domain id="grid_T" />
+         <axis id="nfloat" />
+       </grid>
+        <!--  -->
+       <grid id="grid_EqT" >
+         <domain domain_ref="EqT" />
+       </grid>
+        <!--  -->
+       <grid id="grid_znl_T_2D">
+         <domain id="gznl" />
+       </grid>
+        <!--  -->
+       <grid id="grid_znl_T_3D">
+         <domain id="gznl" />
+         <axis id="deptht" />
+       </grid>
+        <!--  -->
+       <grid id="grid_znl_W_3D">
+         <domain id="gznl" />
+         <axis id="depthw" />
+       </grid>
+
+      <grid id="grid_ptr_T_2D">
+       <domain id="ptr" />
+      </grid>
+
+      <grid id="grid_ptr_T_3D">
+       <domain id="ptr" />
+         <axis id="deptht" />
+       </grid>
+
+      <grid id="grid_ptr_W_3D">
+       <domain id="ptr" />
+         <axis id="depthw" />
+      </grid>
+
+    </grid_definition>   
+
+</context>
Index: /NEMO/trunk/cfgs/AGRIF_ICE/EXPREF/3_namelist_cfg
===================================================================
--- /NEMO/trunk/cfgs/AGRIF_ICE/EXPREF/3_namelist_cfg	(revision 9770)
+++ /NEMO/trunk/cfgs/AGRIF_ICE/EXPREF/3_namelist_cfg	(revision 9770)
@@ -0,0 +1,354 @@
+!!>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
+!! NEMO/OPA  Configuration namelist : overwrite some defaults values defined in SHARED/1_namelist_ref
+!!>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
+!                       ORCA2 - SI3 configuration                      !
+
+!!======================================================================
+!!              ***  Domain & Run management namelists  ***           !!
+!!                                                                    !!
+!!   namrun       parameters of the run
+!!   namdom       space and time domain
+!!   namcfg       parameters of the configuration                       (default: user defined GYRE)
+!!   namwad       Wetting and drying                                    (default: OFF)
+!!   namtsd       data: temperature & salinity                          (default: OFF)
+!!   namcrs       coarsened grid (for outputs and/or TOP)               (ln_crs =T)
+!!======================================================================
+!
+!-----------------------------------------------------------------------
+&namrun        !   parameters of the run
+!-----------------------------------------------------------------------
+   cn_exp      = "Nordic"  !  experience name 
+   nn_it000    =    1      !  first time step
+   nn_itend    =  900      !  last  time step
+   nn_istate   =      0    !  output the initial state (1) or not (0)
+   ln_clobber  = .true.    !  clobber (overwrite) an existing file
+/
+!-----------------------------------------------------------------------
+&namdom        !   space and time domain
+!-----------------------------------------------------------------------
+   ln_linssh   = .false.   !  =T  linear free surface  ==>>  model level are fixed in time
+   !
+   rn_rdt      = 480.     !  time step for the dynamics (and tracer if nn_acc=0)
+/
+!-----------------------------------------------------------------------
+&namcfg        !   parameters of the configuration                      (default: user defined GYRE)
+!-----------------------------------------------------------------------
+   ln_read_cfg = .true.    !  (=T) read the domain configuration file
+      cn_domcfg = "ORCA_R017_zps_domcfg_agrif"    ! domain configuration filename
+/
+!-----------------------------------------------------------------------
+&namtsd        !    Temperature & Salinity Data                         (default: OFF)
+!-----------------------------------------------------------------------
+   !                       ! =T  read T-S fields for:
+   ln_tsd_init = .true.          !  ocean initialisation
+   ln_tsd_dmp  = .false.         !  T-S restoring   (see namtra_dmp)
+
+   cn_dir = './'     !  root directory for the T-S data location
+   !___________!_________________________!___________________!___________!_____________!________!___________!__________________!__________!_______________!
+   !           !  file name              ! frequency (hours) ! variable  ! time interp.!  clim  ! 'yearly'/ ! weights filename ! rotation ! land/sea mask !
+   !           !                         !  (if <0  months)  !   name    !   (logical) !  (T/F) ! 'monthly' !                  ! pairing  !    filename   !
+   sn_tem = 'data_1m_potential_temperature_nomask',     -1      ,'votemper',   .true.    , .true. , 'yearly'  ,    ''    ,    ''    ,    ''
+   sn_sal = 'data_1m_salinity_nomask'             ,     -1      ,'vosaline',   .true.    , .true. , 'yearly'  ,    ''    ,    ''    ,    ''
+/
+
+!!======================================================================
+!!            ***  Surface Boundary Condition namelists  ***          !!
+!!                                                                    !!
+!!   namsbc          surface boundary condition manager                 (default: NO selection)
+!!   namsbc_flx      flux               formulation                     (ln_flx     =T)
+!!   namsbc_blk      Bulk formulae formulation                          (ln_blk     =T)
+!!   namsbc_cpl      CouPLed            formulation                     ("key_oasis3" )
+!!   namsbc_sas      Stand-Alone Surface module                         (SAS_SRC  only)
+!!   namtra_qsr      penetrative solar radiation                        (ln_traqsr  =T)
+!!   namsbc_rnf      river runoffs                                      (ln_rnf     =T)
+!!   namsbc_isf      ice shelf melting/freezing                         (ln_isfcav  =T : read (ln_read_cfg=T) or set or usr_def_zgr )
+!!   namsbc_iscpl    coupling option between land ice model and ocean   (ln_isfcav  =T)
+!!   namsbc_apr      Atmospheric Pressure                               (ln_apr_dyn =T)
+!!   namsbc_ssr      sea surface restoring term (for T and/or S)        (ln_ssr     =T)
+!!   namsbc_wave     external fields from wave model                    (ln_wave    =T)
+!!   namberg         iceberg floats                                     (ln_icebergs=T)
+!!======================================================================
+!
+!-----------------------------------------------------------------------
+&namsbc        !   Surface Boundary Condition (surface module)
+!-----------------------------------------------------------------------
+   nn_fsbc     = 1         !  frequency of SBC module call
+                     ! Type of air-sea fluxes 
+   ln_blk      = .true.    !  Bulk formulation                          (T => fill namsbc_blk )
+                     ! Sea-ice :
+   nn_ice      = 2         !  =0   Use SI3 model
+                     ! Misc. options of sbc : 
+   ln_traqsr   = .true.    !  Light penetration in the ocean            (T => fill namtra_qsr)
+   ln_rnf      = .false.   !  runoffs                                   (T => fill namsbc_rnf)
+   ln_ssr      = .false.   !  Sea Surface Restoring on T and/or S       (T => fill namsbc_ssr)
+   nn_fwb      = 0         !  FreshWater Budget: =0 unchecked
+/
+!-----------------------------------------------------------------------
+&namsbc_blk   !   namsbc_blk  generic Bulk formula                      (ln_blk =T)
+!-----------------------------------------------------------------------
+   !                    !  bulk algorithm :
+   ln_NCAR     = .true.    ! "NCAR"      algorithm   (Large and Yeager 2008)
+
+   cn_dir      = './'      !  root directory for the bulk data location
+   !___________!_________________________!___________________!___________!_____________!________!___________!______________________________________!__________!_______________!
+   !           !  file name              ! frequency (hours) ! variable  ! time interp.!  clim  ! 'yearly'/ !          weights filename            ! rotation ! land/sea mask !
+   !           !                         !  (if <0  months)  !   name    !   (logical) !  (T/F) ! 'monthly' !                                      ! pairing  !    filename   !
+   sn_wndi     = 'u_10.15JUNE2009_fill'       ,    6         , 'U_10_MOD',   .false.   , .true. , 'yearly'  , 'weights_core2_nordic2_bicub.nc'     , 'Uwnd'   , ''
+   sn_wndj     = 'v_10.15JUNE2009_fill'       ,    6         , 'V_10_MOD',   .false.   , .true. , 'yearly'  , 'weights_core2_nordic2_bicub.nc'     , 'Vwnd'   , ''
+   sn_qsr      = 'ncar_rad.15JUNE2009_fill'   ,   24         , 'SWDN_MOD',   .false.   , .true. , 'yearly'  , 'weights_core2_nordic2_bilin.nc'     , ''       , ''
+   sn_qlw      = 'ncar_rad.15JUNE2009_fill'   ,   24         , 'LWDN_MOD',   .false.   , .true. , 'yearly'  , 'weights_core2_nordic2_bilin.nc'     , ''       , ''
+   sn_tair     = 't_10.15JUNE2009_fill'       ,    6         , 'T_10_MOD',   .false.   , .true. , 'yearly'  , 'weights_core2_nordic2_bilin.nc'     , ''       , ''
+   sn_humi     = 'q_10.15JUNE2009_fill'       ,    6         , 'Q_10_MOD',   .false.   , .true. , 'yearly'  , 'weights_core2_nordic2_bilin.nc'     , ''       , ''
+   sn_prec     = 'ncar_precip.15JUNE2009_fill',   -1         , 'PRC_MOD1',   .false.   , .true. , 'yearly'  , 'weights_core2_nordic2_bilin.nc'     , ''       , ''
+   sn_snow     = 'ncar_precip.15JUNE2009_fill',   -1         , 'SNOW'    ,   .false.   , .true. , 'yearly'  , 'weights_core2_nordic2_bilin.nc'     , ''       , ''
+   sn_slp      = 'slp.15JUNE2009_fill'        ,    6         , 'SLP'     ,   .false.   , .true. , 'yearly'  , 'weights_core2_nordic2_bilin.nc'     , ''       , ''
+   sn_tdif     = 'taudif_core'                ,   24         , 'taudif'  ,   .false.   , .true. , 'yearly'  , 'weights_core2_nordic2_bilin.nc'     , ''       , ''
+
+/
+!-----------------------------------------------------------------------
+&namtra_qsr    !   penetrative solar radiation                          (ln_traqsr =T)
+!-----------------------------------------------------------------------
+   !                       ! type of penetration                        (default: NO selection)
+   ln_qsr_rgb  = .true.       !  RGB light penetration (Red-Green-Blue)
+   !
+   nn_chldta   =      1       !  RGB : Chl data (=1) or cst value (=0)
+
+   cn_dir      = './'      !  root directory for the chlorophyl data location
+   !___________!_________________________!___________________!___________!_____________!________!___________!______________________________________!__________!_______________!
+   !           !  file name              ! frequency (hours) ! variable  ! time interp.!  clim  ! 'yearly'/ !          weights filename            ! rotation ! land/sea mask !
+   !           !                         !  (if <0  months)  !   name    !   (logical) !  (T/F) ! 'monthly' !                                      ! pairing  !    filename   !
+   sn_chl      ='chlorophyll'            ,        -1         , 'CHLA'    ,   .true.    , .true. , 'yearly'  , ''                                   , ''       , ''
+/
+!-----------------------------------------------------------------------
+&namsbc_rnf    !   runoffs                                              (ln_rnf =T)
+!-----------------------------------------------------------------------
+   !  not used in this zoom
+/
+!-----------------------------------------------------------------------
+&namsbc_ssr    !   surface boundary condition : sea surface restoring   (ln_ssr =T)
+!-----------------------------------------------------------------------
+   !  not used in this zoom
+/
+!-----------------------------------------------------------------------
+&namberg       !   iceberg parameters                                   (default: No iceberg)
+!-----------------------------------------------------------------------
+   !  iceberg floats are not currently available with AGRIF
+   !     ===>>  forced deactivation in icbini.F90 
+/
+
+!!======================================================================
+!!               ***  Lateral boundary condition  ***                 !!
+!!                                                                    !!
+!!   namlbc        lateral momentum boundary condition                  (default: NO selection)
+!!   namagrif      agrif nested grid ( read by child model only )       ("key_agrif")
+!!   nam_tide      Tidal forcing                                        (default: OFF)
+!!   nambdy        Unstructured open boundaries                         (default: OFF)
+!!   nambdy_dta    Unstructured open boundaries - external data         (see  nambdy)
+!!   nambdy_tide   tidal forcing at open boundaries                     (default: OFF)
+!!======================================================================
+!
+!-----------------------------------------------------------------------
+&namlbc        !   lateral momentum boundary condition                  (default: NO selection)
+!-----------------------------------------------------------------------
+   rn_shlat    =    2.     !  no slip
+/
+!-----------------------------------------------------------------------
+&namagrif      !  AGRIF zoom                                            ("key_agrif")
+!-----------------------------------------------------------------------
+   ln_spc_dyn    = .true.  !  use 0 as special value for dynamics
+   rn_sponge_tra =  480.   !  coefficient for tracer   sponge layer [m2/s]
+   rn_sponge_dyn =  480.   !  coefficient for dynamics sponge layer [m2/s]
+   ln_chk_bathy  = .true.  !  =T  check the parent bathymetry
+/
+!-----------------------------------------------------------------------
+&namdrg        !   top/bottom drag coefficient                          (default: NO selection)
+!-----------------------------------------------------------------------
+   ln_non_lin = .true.    !  non-linear  drag: Cd = Cd0 |U|
+/
+!-----------------------------------------------------------------------
+&namdrg_bot    !   BOTTOM friction                                  
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&nambbc        !   bottom temperature boundary condition                (default: OFF)
+!-----------------------------------------------------------------------
+   ln_trabbc   = .true.    !  Apply a geothermal heating at the ocean bottom
+      nn_geoflx   =    1      !  geothermal heat flux: = 2 read variable flux [mW/m2]
+/
+!-----------------------------------------------------------------------
+&nambbl        !   bottom boundary layer scheme                         (default: OFF)
+!-----------------------------------------------------------------------
+   ln_trabbl   = .true.    !  Bottom Boundary Layer parameterisation flag
+      nn_bbl_ldf  =  1        !  diffusive bbl (=1)   or not (=0)
+      nn_bbl_adv  =  0        !  advective bbl (=1/2) or not (=0)
+      rn_ahtbbl   =  1000.    !  lateral mixing coefficient in the bbl  [m2/s]
+      rn_gambbl   =  10.      !  advective bbl coefficient                 [s]
+/
+
+!!======================================================================
+!!                        Tracer (T & S) namelists                    !!
+!!                                                                    !!
+!!   nameos        equation of state                                    (default: NO selection)
+!!   namtra_adv    advection scheme                                     (default: NO selection)
+!!   namtra_ldf    lateral diffusion scheme                             (default: NO selection)
+!!   namtra_mle    mixed layer eddy param. (Fox-Kemper param.)          (default: OFF)
+!!   namtra_eiv    eddy induced velocity param.                         (default: OFF)
+!!   namtra_dmp    T & S newtonian damping                              (default: OFF)
+!!======================================================================
+!
+!-----------------------------------------------------------------------
+&nameos        !   ocean Equation Of Seawater                           (default: NO selection)
+!-----------------------------------------------------------------------
+   ln_eos80    = .true.          !  = Use EOS80
+/
+!-----------------------------------------------------------------------
+&namtra_adv    !   advection scheme for tracer                          (default: NO selection)
+!-----------------------------------------------------------------------
+   ln_traadv_ubs = .true. !  UBS scheme
+      nn_ubs_v   =  2            !  =2  , vertical 2nd order FCT / COMPACT 4th order
+/
+!-----------------------------------------------------------------------
+&namtra_mle    !   mixed layer eddy parametrisation (Fox-Kemper)        (default: OFF)
+!-----------------------------------------------------------------------
+   ln_mle      = .true.   ! (T) use the Mixed Layer Eddy (MLE) parameterisation
+/
+!-----------------------------------------------------------------------
+&namtra_ldf    !   lateral diffusion scheme for tracers                 (default: NO selection)
+!-----------------------------------------------------------------------
+   ln_traldf_OFF   =  .true.  !           No operator (no explicit advection)
+/
+!-----------------------------------------------------------------------
+&namtra_eiv    !   eddy induced velocity param.                         (default: OFF)
+!-----------------------------------------------------------------------
+   !  not used in this zoom
+/
+!-----------------------------------------------------------------------
+&namtra_dmp    !   tracer: T & S newtonian damping                      (default: OFF)
+!-----------------------------------------------------------------------
+   !  not used in this zoom
+/
+
+!!======================================================================
+!!                      ***  Dynamics namelists  ***                  !!
+!!                                                                    !!
+!!   nam_vvl       vertical coordinate options                          (default: z-star)
+!!   namdyn_adv    formulation of the momentum advection                (default: NO selection)
+!!   namdyn_vor    advection scheme                                     (default: NO selection)
+!!   namdyn_hpg    hydrostatic pressure gradient                        (default: NO selection)
+!!   namdyn_spg    surface pressure gradient                            (default: NO selection)
+!!   namdyn_ldf    lateral diffusion scheme                             (default: NO selection)
+!!   namdta_dyn    offline TOP: dynamics read in files                  (OFF_SRC only)
+!!======================================================================
+!
+!-----------------------------------------------------------------------
+&nam_vvl       !   vertical coordinate options                          (default: z-star)
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&namdyn_adv    !   formulation of the momentum advection                (default: NO selection)
+!-----------------------------------------------------------------------
+   ln_dynadv_ubs = .true.  !  flux form - 3rd order UBS      scheme
+/
+!-----------------------------------------------------------------------
+&namdyn_vor    !   Vorticity / Coriolis scheme                          (default: NO selection)
+!-----------------------------------------------------------------------
+   ln_dynvor_ene = .true.  !  energy conserving scheme
+/
+!-----------------------------------------------------------------------
+&namdyn_hpg    !   Hydrostatic pressure gradient option                 (default: NO selection)
+!-----------------------------------------------------------------------
+   ln_hpg_sco  = .true.    !  s-coordinate (standard jacobian formulation)
+/
+!-----------------------------------------------------------------------
+&namdyn_spg    !   surface pressure gradient                            (default: NO selection)
+!-----------------------------------------------------------------------
+   ln_dynspg_ts  = .true.  !  split-explicit free surface
+/
+!-----------------------------------------------------------------------
+&namdyn_ldf    !   lateral diffusion on momentum                        (default: NO selection)
+!-----------------------------------------------------------------------
+   ln_dynldf_OFF =  .true.    !  No operator (i.e. no explicit diffusion)
+/
+
+!!======================================================================
+!!                     vertical physics namelists                     !!
+!!                                                                    !!
+!!    namzdf        vertical physics manager                            (default: NO selection)
+!!    namzdf_ric    richardson number vertical mixing                   (ln_zdfric=T)
+!!    namzdf_tke    TKE vertical mixing                                 (ln_zdftke=T)
+!!    namzdf_gls    GLS vertical mixing                                 (ln_zdfgls=T)
+!!    namzdf_osm    OSM vertical diffusion                              (ln_zdfosm=T)
+!!    namzdf_iwm    tidal mixing parameterization                       (ln_zdfiwm=T)
+!!======================================================================
+!
+!-----------------------------------------------------------------------
+&namzdf        !   vertical physics                                     (default: NO selection)
+!-----------------------------------------------------------------------
+   !                       ! type of vertical closure
+   ln_zdftke   = .true.       !  Turbulent Kinetic Energy closure       (T =>   fill namzdf_tke)
+   !
+   !                       ! convection
+   ln_zdfevd   = .true.       !  Enhanced Vertical Diffusion scheme
+      nn_evdm  =    0            !  evd apply on tracer (=0) or on tracer and momentum (=1)
+      rn_evd   =  100.           !  evd mixing coefficient [m2/s]
+   !
+   ln_zdfddm   = .true.    ! double diffusive mixing
+      rn_avts  =    1.e-4     !  maximum avs (vertical mixing on salinity)
+      rn_hsbfr =    1.6       !  heat/salt buoyancy flux ratio
+   !
+   !                       !  Coefficients
+   rn_avm0     =   1.2e-4     !  vertical eddy viscosity   [m2/s]       (background Kz if ln_zdfcst=F)
+   rn_avt0     =   1.2e-5     !  vertical eddy diffusivity [m2/s]       (background Kz if ln_zdfcst=F)
+   nn_avb      =    0         !  profile for background avt & avm (=1) or not (=0)
+   nn_havtb    =    1         !  horizontal shape for avtb (=1) or not (=0)
+/
+!-----------------------------------------------------------------------
+&namzdf_tke    !   turbulent eddy kinetic dependent vertical diffusion  (ln_zdftke =T)
+!-----------------------------------------------------------------------
+/
+
+!!======================================================================
+!!                  ***  Diagnostics namelists  ***                   !!
+!!                                                                    !!
+!!   namtrd       dynamics and/or tracer trends                         (default: OFF)
+!!   namptr       Poleward Transport Diagnostics                        (default: OFF)
+!!   namhsb       Heat and salt budgets                                 (default: OFF)
+!!   namdiu       Cool skin and warm layer models                       (default: OFF)
+!!   namdiu       Cool skin and warm layer models                       (default: OFF)
+!!   namflo       float parameters                                      ("key_float")
+!!   nam_diaharm  Harmonic analysis of tidal constituents               ("key_diaharm")
+!!   namdct       transports through some sections                      ("key_diadct")
+!!   nam_diatmb   Top Middle Bottom Output                              (default: OFF)
+!!   nam_dia25h   25h Mean Output                                       (default: OFF)
+!!   namnc4       netcdf4 chunking and compression settings             ("key_netcdf4")
+!!======================================================================
+!
+
+!!======================================================================
+!!               ***  Observation & Assimilation  ***                 !!
+!!                                                                    !!
+!!   namobs       observation and model comparison                      (default: OFF)
+!!   nam_asminc   assimilation increments                               ('key_asminc')
+!!======================================================================
+!
+!!======================================================================
+!!                  ***  Miscellaneous namelists  ***                 !!
+!!                                                                    !!
+!!   nammpp            Massively Parallel Processing                    ("key_mpp_mpi")
+!!   namctl            Control prints                                   (default: OFF)
+!!   namsto            Stochastic parametrization of EOS                (default: OFF)
+!!======================================================================
+!
+!
+!-----------------------------------------------------------------------
+&nammpp        !   Massively Parallel Processing                        ("key_mpp_mpi")
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&namctl        !   Control prints                                       (default: OFF)
+!-----------------------------------------------------------------------
+/
+!-----------------------------------------------------------------------
+&namsto        ! Stochastic parametrization of EOS                      (default: OFF)
+!-----------------------------------------------------------------------
+/
Index: /NEMO/trunk/cfgs/AGRIF_ICE/EXPREF/3_namelist_ice_cfg
===================================================================
--- /NEMO/trunk/cfgs/AGRIF_ICE/EXPREF/3_namelist_ice_cfg	(revision 9770)
+++ /NEMO/trunk/cfgs/AGRIF_ICE/EXPREF/3_namelist_ice_cfg	(revision 9770)
@@ -0,0 +1,84 @@
+!!>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
+!! SI3 namelist:  
+!!              1 - Generic parameters                 (nampar)
+!!              2 - Ice thickness discretization       (namitd)
+!!              3 - Ice dynamics                       (namdyn)
+!!              4 - Ice ridging/rafting                (namdyn_rdgrft)
+!!              5 - Ice rheology                       (namdyn_rhg)
+!!              6 - Ice advection                      (namdyn_adv)
+!!              7 - Ice surface forcing                (namforcing)
+!!              8 - Ice thermodynamics                 (namthd)
+!!              9 - Ice heat diffusion                 (namthd_zdf)
+!!             10 - Ice lateral melting                (namthd_da)
+!!             11 - Ice growth in open water           (namthd_do)
+!!             12 - Ice salinity                       (namthd_sal)
+!!             13 - Ice melt ponds                     (namthd_pnd)
+!!             14 - Ice initialization                 (namini)
+!!             15 - Ice/snow albedos                   (namalb)
+!!             16 - Ice diagnostics                    (namdia)
+!!>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
+!
+!------------------------------------------------------------------------------
+&nampar         !   Generic parameters
+!------------------------------------------------------------------------------
+/
+!------------------------------------------------------------------------------
+&namitd         !   Ice discretization
+!------------------------------------------------------------------------------
+/
+!------------------------------------------------------------------------------
+&namdyn         !   Ice dynamics
+!------------------------------------------------------------------------------
+/
+!------------------------------------------------------------------------------
+&namdyn_rdgrft  !   Ice ridging/rafting
+!------------------------------------------------------------------------------
+/
+!------------------------------------------------------------------------------
+&namdyn_rhg     !   Ice rheology
+!------------------------------------------------------------------------------
+/
+!------------------------------------------------------------------------------
+&namdyn_adv     !   Ice advection
+!------------------------------------------------------------------------------
+/
+!------------------------------------------------------------------------------
+&namforcing     !   Ice surface forcing
+!------------------------------------------------------------------------------
+/
+!------------------------------------------------------------------------------
+&namthd         !   Ice thermodynamics
+!------------------------------------------------------------------------------
+/
+!------------------------------------------------------------------------------
+&namthd_zdf     !   Ice heat diffusion
+!------------------------------------------------------------------------------
+/
+!------------------------------------------------------------------------------
+&namthd_da      !   Ice lateral melting
+!------------------------------------------------------------------------------
+/
+!------------------------------------------------------------------------------
+&namthd_do      !   Ice growth in open water
+!------------------------------------------------------------------------------
+/
+!------------------------------------------------------------------------------
+&namthd_sal     !   Ice salinity
+!------------------------------------------------------------------------------
+/
+!------------------------------------------------------------------------------
+&namthd_pnd     !   Melt ponds
+!------------------------------------------------------------------------------
+/
+!------------------------------------------------------------------------------
+&namini         !   Ice initialization
+!------------------------------------------------------------------------------
+/
+!------------------------------------------------------------------------------
+&namalb         !   albedo parameters
+!------------------------------------------------------------------------------
+/
+!------------------------------------------------------------------------------
+&namdia         !   Diagnostics
+!------------------------------------------------------------------------------
+/
Index: /NEMO/trunk/cfgs/AGRIF_ICE/EXPREF/3_namelist_ice_ref
===================================================================
--- /NEMO/trunk/cfgs/AGRIF_ICE/EXPREF/3_namelist_ice_ref	(revision 9770)
+++ /NEMO/trunk/cfgs/AGRIF_ICE/EXPREF/3_namelist_ice_ref	(revision 9770)
@@ -0,0 +1,1 @@
+link ../../SHARED/namelist_ice_ref
Index: /NEMO/trunk/cfgs/AGRIF_ICE/EXPREF/3_namelist_ref
===================================================================
--- /NEMO/trunk/cfgs/AGRIF_ICE/EXPREF/3_namelist_ref	(revision 9770)
+++ /NEMO/trunk/cfgs/AGRIF_ICE/EXPREF/3_namelist_ref	(revision 9770)
@@ -0,0 +1,1 @@
+link ../../SHARED/namelist_ref
Index: /NEMO/trunk/cfgs/AGRIF_ICE/EXPREF/AGRIF_FixedGrids.in
===================================================================
--- /NEMO/trunk/cfgs/AGRIF_ICE/EXPREF/AGRIF_FixedGrids.in	(revision 9769)
+++ /NEMO/trunk/cfgs/AGRIF_ICE/EXPREF/AGRIF_FixedGrids.in	(revision 9770)
@@ -1,4 +1,6 @@
-1
-124 155 112 145 4 4 4
+2
+42 82 49 91 1 1 1
+122 153 110 143 4 4 4
+0
 1
 38 80 71 111 3 3 3
Index: /NEMO/trunk/cfgs/AGRIF_ICE/EXPREF/iodef.xml
===================================================================
--- /NEMO/trunk/cfgs/AGRIF_ICE/EXPREF/iodef.xml	(revision 9769)
+++ /NEMO/trunk/cfgs/AGRIF_ICE/EXPREF/iodef.xml	(revision 9770)
@@ -23,6 +23,6 @@
 
   <context id="nemo" src="./context_nemo.xml"/>       <!--  NEMO       -->
-  <context id="1_nemo" src="./1_context_nemo.xml"/>       <!--  NEMO       -->
-  <context id="2_nemo" src="./2_context_nemo.xml"/>       <!--  NEMO       -->
-
+  <context id="1_nemo" src="./1_context_nemo.xml"/>   <!--  NEMO       -->
+  <context id="2_nemo" src="./2_context_nemo.xml"/>   <!--  NEMO       -->
+  <context id="3_nemo" src="./3_context_nemo.xml"/>   <!--  NEMO       -->
 </simulation>
