Changeset 998


Ignore:
Timestamp:
2008-05-28T13:53:22+02:00 (13 years ago)
Author:
gm
Message:

trunk - DOC - update .tex due to the change in position of NEMO_book

Location:
trunk/DOC
Files:
9 edited

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  • trunk/DOC/NEMO_book.tex

    r997 r998  
    136136 
    137137%--------------------------------------------namlist--------------------------------------------------------- 
    138 %\newcommand{\namdisplay} [1] {  \vspace{-25pt} 
    139 %  \begin{alltt}  \textcolor{blue}{{\scriptsize \verbatiminput{./Namelist/#1}}}  \end{alltt} 
    140 %                          \vspace{-20pt} } 
    141138\newcommand{\namdisplay} [1] {  
    142    \begin{alltt}  {{\tiny \verbatiminput{./Namelist/#1}}}  \end{alltt}  
     139   \begin{alltt}  {{\tiny \verbatiminput{./TexFiles/Namelist/#1}}}  \end{alltt}  
    143140                               \vspace{-10pt}   } 
    144141%-------------------------------------------------------------------------------------------------------------- 
     
    168165 
    169166\title{  
    170 \includegraphics[width=0.2\textwidth]{./Figures/logo_CNRS.pdf}  
     167\includegraphics[width=0.2\textwidth]{./TexFiles/Figures/logo_CNRS.pdf}  
    171168\quad 
    172 \includegraphics[width=0.2\textwidth]{./Figures/logo_MERCATOR.pdf}  
     169\includegraphics[width=0.2\textwidth]{./TexFiles/Figures/logo_MERCATOR.pdf}  
    173170\quad 
    174 \includegraphics[width=0.1\textwidth]{./Figures/logo_UKMO.pdf}  
     171\includegraphics[width=0.1\textwidth]{./TexFiles/Figures/logo_UKMO.pdf}  
    175172\quad 
    176 \includegraphics[width=0.2\textwidth]{./Figures/logo_NERC.pdf} \\ 
     173\includegraphics[width=0.2\textwidth]{./TexFiles/Figures/logo_NERC.pdf} \\ 
    177174\vspace{3.0cm} 
    178 \includegraphics[width=0.3\textwidth]{./Figures/NEMO_logo_Black.pdf} \\ 
     175\includegraphics[width=0.3\textwidth]{./TexFiles/Figures/NEMO_logo_Black.pdf} \\ 
    179176\vspace{1.0cm} 
    180177\rule{345pt}{1.5pt} \\ 
     
    194191 
    195192 
    196 %%\includegraphics[width=0.2\textwidth]{./Figures/logo_NERC.pdf} \\ 
     193%%\includegraphics[width=0.2\textwidth]{./TexFiles/Figures/logo_NERC.pdf} \\ 
    197194 
    198195%%    \hbox{\mbox{% 
    199196%%       \hspace{4pt}% 
    200 %%         \fbox{\includegraphics[width=3em]{./Figures/logo_CNRS.pdf}}% 
     197%%         \fbox{\includegraphics[width=3em]{./TexFiles/Figures/logo_CNRS.pdf}}% 
    201198%%        \hspace{4pt} 
    202199%%        }  }% 
     
    215212% ================================================================ 
    216213 
    217 %\includeonly{./Chapters/Chap_MISC} 
    218 %\includeonly{./Chapters/Annex_E} 
    219 %\includeonly{./Chapters/Chap_LBC,./Chapters/Chap_MISC} 
    220 %\includeonly{./Chapters/Chap_Model_Basics_zstar} 
    221 %\includeonly{./Chapters/Annex_A,./Chapters/Annex_B,./Chapters/Annex_C,./Chapters/Annex_D} 
     214%\includeonly{./TexFiles/Chapters/Chap_MISC} 
     215%\includeonly{./TexFiles/Chapters/Annex_E} 
     216%\includeonly{./TexFiles/Chapters/Chap_LBC,./TexFiles/Chapters/Chap_MISC} 
     217%\includeonly{./TexFiles/Chapters/Chap_Model_Basics_zstar} 
     218%\includeonly{./TexFiles/Chapters/Annex_A,./TexFiles/Chapters/Annex_B,./TexFiles/Chapters/Annex_C,./TexFiles/Chapters/Annex_D} 
    222219 
    223220% ================================================================ 
     
    239236% ================================================================ 
    240237 
    241 \include{./Chapters/Abstracts_Foreword} 
     238\include{./TexFiles/Chapters/Abstracts_Foreword} 
    242239 
    243240% ================================================================ 
     
    245242% ================================================================ 
    246243 
    247 \include{./Chapters/Introduction} 
     244\include{./TexFiles/Chapters/Introduction} 
    248245 
    249246% ================================================================ 
     
    251248% ================================================================ 
    252249 
    253 \include{./Chapters/Chap_Model_Basics} 
    254  
    255 %\include{./Chapters/Chap_Model_Basics_zstar}   % attent to describe z*-s* 
    256  
    257 \include{./Chapters/Chap_DOM} 
    258  
    259 \include{./Chapters/Chap_TRA} 
    260  
    261 \include{./Chapters/Chap_DYN} 
    262  
    263 \include{./Chapters/Chap_SBC} 
    264  
    265 \include{./Chapters/Chap_LBC} 
    266  
    267 \include{./Chapters/Chap_LDF} 
    268  
    269 \include{./Chapters/Chap_ZDF} 
    270  
    271 \include{./Chapters/Chap_MISC} 
     250\include{./TexFiles/Chapters/Chap_Model_Basics} 
     251 
     252%\include{./TexFiles/Chapters/Chap_Model_Basics_zstar}   % attent to describe z*-s* 
     253 
     254\include{./TexFiles/Chapters/Chap_DOM} 
     255 
     256\include{./TexFiles/Chapters/Chap_TRA} 
     257 
     258\include{./TexFiles/Chapters/Chap_DYN} 
     259 
     260\include{./TexFiles/Chapters/Chap_SBC} 
     261 
     262\include{./TexFiles/Chapters/Chap_LBC} 
     263 
     264\include{./TexFiles/Chapters/Chap_LDF} 
     265 
     266\include{./TexFiles/Chapters/Chap_ZDF} 
     267 
     268\include{./TexFiles/Chapters/Chap_MISC} 
    272269 
    273270% ================================================================ 
     
    277274\appendix 
    278275 
    279 %\include{./Chapters/Chap_Conservation} 
    280 \include{./Chapters/Annex_A} 
    281 \include{./Chapters/Annex_B} 
    282 \include{./Chapters/Annex_C} 
    283 %\include{./Chapters/Annex_D} 
    284 %\include{./Chapters/Annex_E} 
    285  
    286 %%%%\include{./Chapters/0_page_de_garde_old} 
     276%\include{./TexFiles/Chapters/Chap_Conservation} 
     277\include{./TexFiles/Chapters/Annex_A} 
     278\include{./TexFiles/Chapters/Annex_B} 
     279\include{./TexFiles/Chapters/Annex_C} 
     280%\include{./TexFiles/Chapters/Annex_D} 
     281%\include{./TexFiles/Chapters/Annex_E} 
     282 
    287283% ================================================================ 
    288284% INDEX 
     
    297293 
    298294%%\bibliographystyle{plainnat} 
    299 \bibliographystyle{./ametsoc}       % AMS biblio style (JPO) 
    300 \bibliography{./Biblio/Biblio} 
     295\bibliographystyle{./TexFiles/ametsoc}       % AMS biblio style (JPO) 
     296\bibliography{./TexFiles/Biblio/Biblio} 
    301297 
    302298% ================================================================ 
  • trunk/DOC/TexFiles/Chapters/Chap_DOM.tex

    r996 r998  
    4545%>>>>>>>>>>>>>>>>>>>>>>>>>>>> 
    4646\begin{figure}[!tb] \label{Fig_cell}  \begin{center} 
    47 \includegraphics[width=0.90\textwidth]{./Figures/Fig_cell.pdf} 
     47\includegraphics[width=0.90\textwidth]{./TexFiles/Figures/Fig_cell.pdf} 
    4848\caption{Arrangement of variables. $T$ indicates scalar points where temperature,  
    4949salinity, density, pressure and horizontal divergence are defined. ($u$,$v$,$w$)  
     
    220220%>>>>>>>>>>>>>>>>>>>>>>>>>>>> 
    221221\begin{figure}[!tb] \label{Fig_index_hor}  \begin{center} 
    222 \includegraphics[width=0.90\textwidth]{./Figures/Fig_index_hor.pdf} 
     222\includegraphics[width=0.90\textwidth]{./TexFiles/Figures/Fig_index_hor.pdf} 
    223223\caption{Horizontal integer indexing used in the \textsc{Fortran} code. The dashed  
    224224area indicates the cell in which variables contained in arrays have the same  
     
    269269%>>>>>>>>>>>>>>>>>>>>>>>>>>>> 
    270270\begin{figure}[!pt] \label{Fig_index_vert}  \begin{center} 
    271 \includegraphics[width=.90\textwidth]{./Figures/Fig_index_vert.pdf} 
     271\includegraphics[width=.90\textwidth]{./TexFiles/Figures/Fig_index_vert.pdf} 
    272272\caption{Vertical integer indexing used in the \textsc{Fortran } code. Note that  
    273273the $k$-axis is orientated downward. The dashed area indicates the cell in  
     
    374374%>>>>>>>>>>>>>>>>>>>>>>>>>>>> 
    375375\begin{figure}[!t] \label{Fig_zgr_e3}  \begin{center} 
    376 \includegraphics[width=0.90\textwidth]{./Figures/Fig_zgr_e3.pdf} 
     376\includegraphics[width=0.90\textwidth]{./TexFiles/Figures/Fig_zgr_e3.pdf} 
    377377\caption{Comparison of (a) traditional definitions of grid-point position and grid-size  
    378378in the vertical, and (b) analytically derived grid-point position and scale factors. For  
     
    479479%>>>>>>>>>>>>>>>>>>>>>>>>>>>> 
    480480\begin{figure}[!tb] \label{Fig_z_zps_s_sps}  \begin{center} 
    481 \includegraphics[width=1.0\textwidth]{./Figures/Fig_z_zps_s_sps.pdf} 
     481\includegraphics[width=1.0\textwidth]{./TexFiles/Figures/Fig_z_zps_s_sps.pdf} 
    482482\caption{The ocean bottom as seen by the model:  
    483483(a) $z$-coordinate with full step,  
     
    583583%>>>>>>>>>>>>>>>>>>>>>>>>>>>> 
    584584\begin{figure}[!tb] \label{Fig_zgr}  \begin{center} 
    585 \includegraphics[width=0.90\textwidth]{./Figures/Fig_zgr.pdf} 
     585\includegraphics[width=0.90\textwidth]{./TexFiles/Figures/Fig_zgr.pdf} 
    586586\caption{Default vertical mesh for ORCA2: 30 ocean levels (L30). Vertical level  
    587587functions for (a) T-point depth and (b) the associated scale factor as computed  
     
    767767%>>>>>>>>>>>>>>>>>>>>>>>>>>>> 
    768768\begin{figure}[!tb] \label{Fig_sco_function}  \begin{center} 
    769 \includegraphics[width=1.0\textwidth]{./Figures/Fig_sco_function.pdf} 
     769\includegraphics[width=1.0\textwidth]{./TexFiles/Figures/Fig_sco_function.pdf} 
    770770\caption{Examples of the stretching function applied to a sea mont; from left to right: surface, surface and bottom, and bottom intensified resolutions} 
    771771\end{center}   \end{figure} 
  • trunk/DOC/TexFiles/Chapters/Chap_DYN.tex

    r996 r998  
    190190\begin{figure}[!ht] \label{Fig_DYN_een_triad} 
    191191\begin{center} 
    192 \includegraphics[width=0.70\textwidth]{./Figures/Fig_DYN_een_triad.pdf} 
     192\includegraphics[width=0.70\textwidth]{./TexFiles/Figures/Fig_DYN_een_triad.pdf} 
    193193\caption{Triads used in the energy and enstrophy conserving scheme (een) for  
    194194$u$-component (upper panel) and $v$-component (lower panel).} 
     
    710710\begin{figure}[!t] \label{Fig_DYN_dynspg_ts} 
    711711\begin{center} 
    712 \includegraphics[width=0.90\textwidth]{./Figures/Fig_DYN_dynspg_ts.pdf} 
     712\includegraphics[width=0.90\textwidth]{./TexFiles/Figures/Fig_DYN_dynspg_ts.pdf} 
    713713\caption{Schematic of the split-explicit time stepping scheme for the external  
    714714and internal modes. Time increases to the right.  
  • trunk/DOC/TexFiles/Chapters/Chap_LBC.tex

    r996 r998  
    4848%>>>>>>>>>>>>>>>>>>>>>>>>>>>> 
    4949\begin{figure}[!t] \label{Fig_LBC_uv}  \begin{center} 
    50 \includegraphics[width=0.90\textwidth]{./Figures/Fig_LBC_uv.pdf} 
     50\includegraphics[width=0.90\textwidth]{./TexFiles/Figures/Fig_LBC_uv.pdf} 
    5151\caption {Lateral boundary (thick line) at T-level. The velocity normal to the  
    5252       boundary is set to zero.} 
     
    7171%>>>>>>>>>>>>>>>>>>>>>>>>>>>> 
    7272\begin{figure}[!p] \label{Fig_LBC_shlat}  \begin{center} 
    73 \includegraphics[width=0.90\textwidth]{./Figures/Fig_LBC_shlat.pdf} 
     73\includegraphics[width=0.90\textwidth]{./TexFiles/Figures/Fig_LBC_shlat.pdf} 
    7474\caption {lateral boundary condition (a) free-slip ($shlat=0$) ; (b) no-slip ($shlat=2$)  
    7575; (c) "partial" free-slip ($0<shlat<2$) and (d) "strong" no-slip ($2<shlat$).  
     
    187187%>>>>>>>>>>>>>>>>>>>>>>>>>>>> 
    188188\begin{figure}[!t] \label{Fig_LBC_jperio}  \begin{center} 
    189 \includegraphics[width=1.0\textwidth]{./Figures/Fig_LBC_jperio.pdf} 
     189\includegraphics[width=1.0\textwidth]{./TexFiles/Figures/Fig_LBC_jperio.pdf} 
    190190\caption {setting of (a) east-west cyclic  (b) symmetric across the equator boundary conditions.} 
    191191\end{center}   \end{figure} 
     
    202202%>>>>>>>>>>>>>>>>>>>>>>>>>>>> 
    203203\begin{figure}[!t] \label{Fig_North_Fold_T}  \begin{center} 
    204 \includegraphics[width=0.90\textwidth]{./Figures/Fig_North_Fold_T.pdf} 
     204\includegraphics[width=0.90\textwidth]{./TexFiles/Figures/Fig_North_Fold_T.pdf} 
    205205\caption {North fold boundary with a $T$-point pivot and cyclic east-west boundary condition ($jperio=4$), as used in ORCA 2, 1/4, and 1/12. Pink shaded area corresponds to the inner domain mask (see text). } 
    206206\end{center}   \end{figure} 
     
    263263%>>>>>>>>>>>>>>>>>>>>>>>>>>>> 
    264264\begin{figure}[!t] \label{Fig_mpp}  \begin{center} 
    265 \includegraphics[width=0.90\textwidth]{./Figures/Fig_mpp.pdf} 
     265\includegraphics[width=0.90\textwidth]{./TexFiles/Figures/Fig_mpp.pdf} 
    266266\caption {Positioning of a sub-domain when massively parallel processing is used. } 
    267267\end{center}   \end{figure} 
     
    339339%>>>>>>>>>>>>>>>>>>>>>>>>>>>> 
    340340\begin{figure}[!ht] \label{Fig_mppini2}  \begin{center} 
    341 \includegraphics[width=0.90\textwidth]{./Figures/Fig_mppini2.pdf} 
     341\includegraphics[width=0.90\textwidth]{./TexFiles/Figures/Fig_mppini2.pdf} 
    342342\caption {Example of Atlantic domain defined for the CLIPPER projet. Initial grid is  
    343343composed of 773 x 1236 horizontal points. (a) the domain is split onto 9 \time 20  
     
    472472%>>>>>>>>>>>>>>>>>>>>>>>>>>>> 
    473473\begin{figure}[!t] \label{Fig_obc_north}  \begin{center} 
    474 \includegraphics[width=0.70\textwidth]{./Figures/Fig_obc_north.pdf} 
     474\includegraphics[width=0.70\textwidth]{./TexFiles/Figures/Fig_obc_north.pdf} 
    475475\caption {Localization of the North open boundary points.} 
    476476\end{center}   
  • trunk/DOC/TexFiles/Chapters/Chap_LDF.tex

    r996 r998  
    232232%>>>>>>>>>>>>>>>>>>>>>>>>>>>> 
    233233\begin{figure}[!ht] \label{Fig_LDF_ZDF1}  \begin{center} 
    234 \includegraphics[width=0.70\textwidth]{./Figures/Fig_LDF_ZDF1.pdf} 
     234\includegraphics[width=0.70\textwidth]{./TexFiles/Figures/Fig_LDF_ZDF1.pdf} 
    235235\caption {averaging procedure for isopycnal slope computation.} 
    236236\end{center}   \end{figure} 
     
    249249%>>>>>>>>>>>>>>>>>>>>>>>>>>>> 
    250250\begin{figure}[!ht] \label{Fig_eiv_slp}  \begin{center} 
    251 \includegraphics[width=0.70\textwidth]{./Figures/Fig_eiv_slp.pdf} 
     251\includegraphics[width=0.70\textwidth]{./TexFiles/Figures/Fig_eiv_slp.pdf} 
    252252\caption {Vertical profile of the slope used for lateral mixing in the mixed layer : \textit{(a)} in the real ocean the slope is the iso-neutral slope in the ocean interior and their have to adjust to the surface boundary (i.e. tend to zero at the surface as there is no mixing across the air-sea interface: wall boundary condition). Nevertheless, the profile between surface zero value and interior iso-neutral one is unknown, and especially the value at the based of the mixed layer ; \textit{(b)} profile of slope using a linear tapering of the slope near the surface and imposing a maximum slope of 1/100 ; \textit{(c)} profile of slope actuelly used in \NEMO: linear decrease of the slope from zero at the surface to its ocean interior value computed just below the mixed layer. Note the huge change in the slope at the based of the mixed layer between  \textit{(b)}  and \textit{(c)}.  
    253253.} 
  • trunk/DOC/TexFiles/Chapters/Chap_MISC.tex

    r996 r998  
    3535%>>>>>>>>>>>>>>>>>>>>>>>>>>>> 
    3636\begin{figure}[!tbp] \label{Fig_MISC_strait_hand}  \begin{center} 
    37 \includegraphics[width=0.80\textwidth]{./Figures/Fig_Gibraltar.pdf} 
    38 \includegraphics[width=0.80\textwidth]{./Figures/Fig_Gibraltar2.pdf} 
     37\includegraphics[width=0.80\textwidth]{./TexFiles/Figures/Fig_Gibraltar.pdf} 
     38\includegraphics[width=0.80\textwidth]{./TexFiles/Figures/Fig_Gibraltar2.pdf} 
    3939\caption {Example of the Gibraltar strait defined in a 1\r{} x 1\r{} mesh.  
    4040\textit{Top}: using partially open cells. The meridional scale factor at $v$-point  
     
    107107%>>>>>>>>>>>>>>>>>>>>>>>>>>>> 
    108108\begin{figure}[!ht] \label{Fig_LBC_zoom}  \begin{center} 
    109 \includegraphics[width=0.90\textwidth]{./Figures/Fig_LBC_zoom.pdf} 
     109\includegraphics[width=0.90\textwidth]{./TexFiles/Figures/Fig_LBC_zoom.pdf} 
    110110\caption {Position of a model domain compared to the data input domain when the zoom functionality is used.} 
    111111\end{center}   \end{figure} 
  • trunk/DOC/TexFiles/Chapters/Chap_Model_Basics.tex

    r996 r998  
    8080%>>>>>>>>>>>>>>>>>>>>>>>>>>>> 
    8181\begin{figure}[!ht] \label{Fig_ocean_bc}  \begin{center} 
    82 \includegraphics[width=0.90\textwidth]{./Figures/Fig_I_ocean_bc.pdf} 
     82\includegraphics[width=0.90\textwidth]{./TexFiles/Figures/Fig_I_ocean_bc.pdf} 
    8383\caption{The ocean is bounded by two surfaces, $z=-H(i,j)$ and $z=\eta(i,j,k,t)$, where $H$ is the depth of the sea floor and $\eta$ the height of the sea surface. Both $H$ and $\eta $ are referenced to $z=0$.} 
    8484\end{center}   \end{figure} 
     
    294294%>>>>>>>>>>>>>>>>>>>>>>>>>>>> 
    295295\begin{figure}[!tb] \label{Fig_referential}  \begin{center} 
    296 \includegraphics[width=0.60\textwidth]{./Figures/Fig_I_earth_referential.pdf} 
     296\includegraphics[width=0.60\textwidth]{./TexFiles/Figures/Fig_I_earth_referential.pdf} 
    297297\caption{the geographical coordinate system $(\lambda,\varphi,z)$ and the curvilinear coordinate system (\textbf{i},\textbf{j},\textbf{k}). } 
    298298\end{center}   \end{figure} 
     
    616616%>>>>>>>>>>>>>>>>>>>>>>>>>>>> 
    617617\begin{figure}[!b] \label{Fig_z_zstar}  \begin{center} 
    618 \includegraphics[width=1.0\textwidth]{./Figures/Fig_z_zstar.pdf} 
     618\includegraphics[width=1.0\textwidth]{./TexFiles/Figures/Fig_z_zstar.pdf} 
    619619\caption{(a) $z$-coordinate in linear free-surface case ; (b) $z-$coordinate in non-linear free surface case (c) re-scaled height coordinate (become popular as the \textit{z*-}coordinate \citep{Adcroft_Campin_OM04} ).} 
    620620\end{center}   \end{figure} 
  • trunk/DOC/TexFiles/Chapters/Chap_TRA.tex

    r996 r998  
    103103%>>>>>>>>>>>>>>>>>>>>>>>>>>>> 
    104104\begin{figure}[!t] \label{Fig_adv_scheme}  \begin{center} 
    105 \includegraphics[width=0.9\textwidth]{./Figures/Fig_adv_scheme.pdf} 
     105\includegraphics[width=0.9\textwidth]{./TexFiles/Figures/Fig_adv_scheme.pdf} 
    106106\caption{Schematic representation of some ways used to evaluate the tracer value  
    107107at $u$-point and the amount of tracer exchanged between two neighbouring grid  
     
    836836%>>>>>>>>>>>>>>>>>>>>>>>>>>>> 
    837837\begin{figure}[!t] \label{Fig_geothermal}  \begin{center} 
    838 \includegraphics[width=1.0\textwidth]{./Figures/Fig_TRA_geoth.pdf} 
     838\includegraphics[width=1.0\textwidth]{./TexFiles/Figures/Fig_TRA_geoth.pdf} 
    839839\caption{Geothermal Heat flux (in $mW.m^{-2}$) as inferred from the age  
    840840of the sea floor and the formulae of \citet{Stein1992}.} 
     
    933933%>>>>>>>>>>>>>>>>>>>>>>>>>>>> 
    934934\begin{figure}[!t] \label{Fig_bbl}  \begin{center} 
    935 \includegraphics[width=1.0\textwidth]{./Figures/Fig_BBL_adv.pdf} 
     935\includegraphics[width=1.0\textwidth]{./TexFiles/Figures/Fig_BBL_adv.pdf} 
    936936\caption{Advective Bottom Boundary Layer.} 
    937937\end{center}   \end{figure} 
     
    12351235%>>>>>>>>>>>>>>>>>>>>>>>>>>>> 
    12361236\begin{figure}[!p] \label{Fig_Partial_step_scheme}  \begin{center} 
    1237 \includegraphics[width=0.9\textwidth]{./Figures/Partial_step_scheme.pdf} 
     1237\includegraphics[width=0.9\textwidth]{./TexFiles/Figures/Partial_step_scheme.pdf} 
    12381238\caption{ Discretisation of the horizontal difference and average of tracers in the $z$-partial step coordinate (\np{ln\_zps}=.true.) in the case $( e3w_k^{i+1} - e3w_k^i  )>0$. A linear interpolation is used to estimate $\widetilde{T}_k^{i+1}$, the tracer value at the depth of the shallower tracer point of the two adjacent bottom $T$-points. The horizontal difference is then given by: $\delta _{i+1/2} T_k=  \widetilde{T}_k^{\,i+1} -T_k^{\,i}$ and the average by: $\overline{T}_k^{\,i+1/2}= ( \widetilde{T}_k^{\,i+1/2} - T_k^{\,i} ) / 2$.  } 
    12391239\end{center}   \end{figure} 
  • trunk/DOC/TexFiles/Chapters/Chap_ZDF.tex

    r996 r998  
    190190%>>>>>>>>>>>>>>>>>>>>>>>>>>>> 
    191191\begin{figure}[!t] \label{Fig_mixing_length}  \begin{center} 
    192 \includegraphics[width=1.00\textwidth]{./Figures/Fig_mixing_length.pdf} 
     192\includegraphics[width=1.00\textwidth]{./TexFiles/Figures/Fig_mixing_length.pdf} 
    193193\caption {Illustration of the mixing length computation. } 
    194194\end{center}   
     
    281281%>>>>>>>>>>>>>>>>>>>>>>>>>>>> 
    282282\begin{figure}[!htb] \label{Fig_npc}   \begin{center} 
    283 \includegraphics[width=0.90\textwidth]{./Figures/Fig_npc.pdf} 
     283\includegraphics[width=0.90\textwidth]{./TexFiles/Figures/Fig_npc.pdf} 
    284284\caption {Example of an unstable density profile treated by the non penetrative  
    285285convective adjustment algorithm. $1^{st}$ step: the initial profile is checked from  
     
    437437%>>>>>>>>>>>>>>>>>>>>>>>>>>>> 
    438438\begin{figure}[!t] \label{Fig_zdfddm}  \begin{center} 
    439 \includegraphics[width=0.99\textwidth]{./Figures/Fig_zdfddm.pdf} 
     439\includegraphics[width=0.99\textwidth]{./TexFiles/Figures/Fig_zdfddm.pdf} 
    440440\caption {From \citet{Merryfield1999} : (a) Diapycnal diffusivities $A_f^{vT}$  
    441441and $A_f^{vS}$ for temperature and salt in regions of salt fingering. Heavy  
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