Index: /NEMO/trunk/doc/latex/TOP/subfiles/model_description.tex
===================================================================
--- /NEMO/trunk/doc/latex/TOP/subfiles/model_description.tex (revision 11693)
+++ /NEMO/trunk/doc/latex/TOP/subfiles/model_description.tex (revision 11694)
@@ -14,5 +14,5 @@
\chapter{Model Description}
\label{chap:ModDes}
-\minitoc
+\chaptertoc
\section{Basics}
@@ -80,5 +80,5 @@
\nlst{namtrc_ldf}
%-------------------------------------------------------------------------------------------------------------
-In NEMO v4.0, the passive tracer diffusion has necessarily the same form as the active tracer diffusion, meaning that the numerical scheme must be the same. However the passive tracer mixing coefficient can be chosen as a multiple of the active ones by changing the value of \textit{rn\_ldf\_multi} in namelist \textit{namtrc\_ldf}. The choice of numerical scheme is then set in the \ngn{namtra\_ldf} namelist for the dynamic described in section 5.2 of \citep{nemo_manual}.
+In NEMO v4.0, the passive tracer diffusion has necessarily the same form as the active tracer diffusion, meaning that the numerical scheme must be the same. However the passive tracer mixing coefficient can be chosen as a multiple of the active ones by changing the value of \textit{rn\_ldf\_multi} in namelist \textit{namtrc\_ldf}. The choice of numerical scheme is then set in the \nam{namtra_ldf}{namtra\_ldf} namelist for the dynamic described in section 5.2 of \citep{nemo_manual}.
@@ -95,5 +95,5 @@
The use of newtonian damping to climatological fields or observations is also coded, sharing the same routine dans active tracers. Boolean variables are defined in the namelist\_top\_ref to select the tracers on which restoring is applied
-Options are defined through the \ngn{namtrc\_dmp} namelist variables. The restoring term is added when the namelist parameter \np{ln\_trcdmp} is set to true. The restoring coefficient is a three-dimensional array read in a file, which name is specified by the namelist variable \np{cn\_resto\_tr}. This netcdf file can be generated using the DMP\_TOOLS tool.
+Options are defined through the \nam{namtrc_dmp}{namtrc\_dmp} namelist variables. The restoring term is added when the namelist parameter \np{ln\_trcdmp} is set to true. The restoring coefficient is a three-dimensional array read in a file, which name is specified by the namelist variable \np{cn\_resto\_tr}. This netcdf file can be generated using the DMP\_TOOLS tool.
\subsection{ Tracer positivity}
@@ -104,5 +104,5 @@
Sometimes, numerical scheme can generates negative values of passive tracers concentration that must be positive. For exemple, isopycnal diffusion can created extrema. The trcrad routine artificially corrects negative concentrations with a very crude solution that either sets negative concentration to zero without adjusting the tracer budget, or by removing negative concentration and keeping mass conservation.
-The treatment of negative concentrations is an option and can be selected in the namelist \ngn{namtrc\_rad} by setting the parameter \np{ln\_trcrad} to true.
+The treatment of negative concentrations is an option and can be selected in the namelist \nam{namtrc_rad}{namtrc\_rad} by setting the parameter \np{ln\_trcrad} to true.
\section{The SMS modules}