usage of SETTE package:

principal script is sette.sh (usage: ./sette.sh) 

sette.sh is a simple wrapper running test on the reference configuration, test cases and generate the report at the end.
sette_cfg-ref.sh, sette_test-cases.sh and the report generation can still be run separatly for debugging purposes

VERY IMPORTANT : for a verbose debug do:
./sette.sh 2>&1 | tee out.sette
this create out.sette file in ${SETTE_DIR}

USER MODIFICATIONS
 in sette_cfg-ref.sh and sette_test-cases.sh script :
               OPTIONAL ARGUMENT : compiler among those available in NEMOGCM/ARCH (if nothing will use the one specified in paramd.cfg)
	       BATCH_COMMAND_PAR : command for job submission in batch mode parallel (MMIÂ) specified in param.cfg
	       BATCH_COMMAND_SEQ : command for job submission in batch mode sequential (NB_PROC = 1)
                                   default value is the BATCH_COMMAND_PAR value
	       INTERACT_FLAG : "yes" if you want to run in interactive mode 
	       		       "no" if you want to run in batch mode
	       MPIRUN_FLAG   : "yes" if you want to run in parallel (MPI)
			       "no" if you want to run in sequential mode (NB_PROC = 1)

               makenemo -m : machine (compilator); see ./makenemo -m help (in NEMOGCM/CONFIG directory)
                        -n : config name (in examples config_name_nproci_nprocj), see ./makenemo -n help
                        -r : reference configuration (if you don't give it you have to choise directories to install)
                        add_key : to add list of keys
                        del_key : to del list of keys
               and for more details and options of makenemo see ./makenemo -h

	       set_namelist : to set namelist values 
			(example : to set 75 time steps for one test : namelist nn_itend 75)
			(        : to change cn_icerst_in name : namelist_ice cn_icerst_in  \"test_00101231_restart_icemod\")
			(  	 : to activate control print : namelist ln_ctl false )
	       prepare_exe_dir.sh creates execution directory for each test
	       			  : NOTE for EACH JOB EXECUTION it is needed to set TEST_NAME variable
				    TEST_NAME variable gives name to execution directory (created in prepare_exe_dir.sh)
				    IT is mandatory to have different TEST_NAME for each job run if not existing files are re-written (for example namelist)

               prepare_job.sh generates the script to be executed 
			input: INPUT_FILE_CONFIG_NAME NUMBER_PROC TEST_NAME MPIRUN_FLAG JOB_FILE

               fcm_job.sh needs input: TOTAL_NUMBER_OF_PROCS_used JOB_FILE_NAME INTERACT_FLAG MPIRUN_FLAG 
			(for example if you run with 4 procs JOB_FILE batch parallel 
			and only run short test ===> ./fcm_job 4 SHORT no    yes   )

 in param.cfg :
               
               COMPILER    : compiler among those available in NEMOGCM/ARCH
               FORCING_DIR 	   : directory in which will be found input.tar file (same name in input_CONFIG_NAME.cfg)
               INPUT_DIR   	   : directory in which store input files (tar file)
                                     reference configuration input tar file could be found here : https://zenodo.org/record/1472245
               TMPDIR      	   : temporary directory NEEDED ONLY FOR IBM machines (put EXP00 directory)
	       NEMO_VALIDATION_DIR : directory in which create NEMO_VALIDATION tree, and store restart, run.stat, tracer.stat and ocean.output files in
      			             tree NEMO_VALIDATION_DIR/WCONFIG_NAME/WCOMPILER_NAME/TEST_NAME/REVISION_NUMBER(or DATE)
               BATCH_CMD           : command for job submission in batch mode
               SVN_CMD             : svn command use to do svn info (default svn). Could be useful if you are using git svn
               NEMO_VALIDATION_REF : reference directory
               NEMO_REV_REF        : reference revision
                                   : Reference directory for result comparison will be NEMO_VALIDATION_REF/COMPILER/NEMO_REV_REF
               ADD_NODIGNEDZERO    : set "yes" if you need key_nosignedzero to run nemo

 in fcm_job.sh :
               IMPORTANT : control that name of tar file in FORCING directory
               is the same of that in input_REF_CONFIG.cfg, if not change one.

               change in "RUN OPA" if [ ${INTERACT_FLAG} == "yes" ] mpirun command line (some examples are already written)
	       NOTE: if INTERACT_FLAG="no" it is needed a batch_file (see below to create a new one)

 in sette_rpt.sh : if no argument are given, the report will be generated on the last changed revision.
                   if an argument is given (revision number) the report will be generated for this revision

NOTE:
in case of error you can remove you NEW_CONF directory and all files doing :
./makenemo -n MY_CONFIG clean_config

if you want recompile nemo but before you want to clean compiled code do :
./makenemo clean

and if you have already compiled you can re-run all sette.sh and compilation part will be by-passed.

NOTE 2: 
if you want a completly verbose makenemo you can uncomment "set -x" in makenemo script
and then launch ./sette.sh 2>&1 | tee out.sette

TO ADD NEW CONFIGURATION:
1. makenemo -n NEW_CONFIG (see makenemo -h for help) OR
2. makenemo -n NEW_CONFIG -r REF_CONFIG (if it is based on another reference configuration)
3. for fcm_job.sh creates a new input_NEW_CONFIG.cfg if you need tar file (if you use same tar file of GYRE, ORCA2_LIM or ORCA2_LIM_PISCES you can use it)

TO ADD NEW MACHINE:
1. add arch-compiler.fcm in NEMOGCM/ARCH directory
2. makenemo -m new_compiler  (see makenemo -h for help)

TO ADD NEW BATCH-FILE:
1. see in SETTE/BATCH_TEMPLATE directory existing examples
2. create you own batch file like: batch-${COMPILER}
(note: sette_test-cases.sh and sette_cfg-ref.sh will copy it in job_batch_template if you run tests in INTERACT_FLAG="no")