!!>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> !! PISCES : 1 - air-sea exchange (nampisext) !! namelists 2 - biological parameters (nampisbio) !! 3 - parameters for nutrient limitations (nampislim) !! 4 - parameters for phytoplankton (nampisprod,nampismort) !! 5 - parameters for zooplankton (nampismes,nampiszoo) !! 6 - parameters for remineralization (nampisrem) !! 7 - parameters for calcite chemistry (nampiscal) !! 8 - parameters for inputs deposition (nampissed) !! 9 - parameters for Kriest parameterization (nampiskrp, nampiskrs) !! 10 - additional 2D/3D diagnostics (nampisdia) !! 11 - Damping (nampisdmp) !>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' &nampisext ! air-sea exchange !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, atcco2 = 287. ! atmospheric pCO2 / !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' &nampisbio ! biological parameters !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, part = 0.85 ! part of calcite not dissolved in guts nrdttrc = 1 ! time step frequency for biology wsbio = 2. ! POC sinking speed xkmort = 1.E-7 ! half saturation constant for mortality ferat3 = 3.E-6 ! Fe/C in zooplankton wsbio2 = 30. ! Big particles sinking speed / !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' &nampislim ! parameters for nutrient limitations !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, conc0 = 2.e-6 ! Phosphate half saturation conc1 = 10E-6 ! Phosphate half saturation for diatoms conc2 = 0.01E-9 ! Iron half saturation for phyto conc2m = 0.08E-9 ! Max iron half saturation for phyto conc3 = 0.1E-9 ! Iron half saturation for diatoms conc3m = 0.4E-9 ! Maxi iron half saturation for diatoms concnnh4 = 1.E-7 ! NH4 half saturation for phyto concdnh4 = 5.E-7 ! NH4 half saturation for diatoms xksi1 = 2.E-6 ! half saturation constant for Si uptake xksi2 = 3.33E-6 ! half saturation constant for Si/C xkdoc = 417.E-6 ! half-saturation constant of DOC remineralization caco3r = 0.3 ! mean rain ratio / !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' &nampisprod ! parameters for phytoplankton growth !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, pislope = 3. ! P-I slope pislope2 = 3. ! P-I slope for diatoms excret = 0.05 ! excretion ratio of phytoplankton excret2 = 0.05 ! excretion ratio of diatoms chlcnm = 0.033 ! Minimum Chl/C in nanophytoplankton chlcdm = 0.05 ! Minimum Chl/C in diatoms fecnm = 10E-6 ! Maximum Fe/C in nanophytoplankton fecdm = 15E-6 ! Minimum Fe/C in diatoms grosip = 0.151 ! mean Si/C ratio / !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' &nampismort ! parameters for phytoplankton sinks !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, wchl = 0.001 ! quadratic mortality of phytoplankton wchld = 0.02 ! maximum quadratic mortality of diatoms mprat = 0.01 ! phytoplankton mortality rate mprat2 = 0.01 ! Diatoms mortality rate mpratm = 0.01 ! Phytoplankton minimum mortality rate / !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' &nampismes ! parameters for mesozooplankton !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, grazrat2 = 0.7 ! maximal mesozoo grazing rate resrat2 = 0.005 ! exsudation rate of mesozooplankton mzrat2 = 0.03 ! mesozooplankton mortality rate xprefc = 1. ! zoo preference for phyto xprefp = 0.2 ! zoo preference for POC xprefz = 1. ! zoo preference for zoo xprefpoc = 0.2 ! zoo preference for poc xkgraz2 = 20.E-6 ! half sturation constant for meso grazing epsher2 = 0.33 ! Efficicency of Mesozoo growth sigma2 = 0.6 ! Fraction of mesozoo excretion as DOM unass2 = 0.3 ! non assimilated fraction of P by mesozoo grazflux = 5.e3 ! flux-feeding rate / !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' &nampiszoo ! parameters for microzooplankton !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, grazrat = 4.0 ! maximal zoo grazing rate resrat = 0.03 ! exsudation rate of zooplankton mzrat = 0.0 ! zooplankton mortality rate xpref2c = 0.1 ! Microzoo preference for POM xpref2p = 0.45 ! Microzoo preference for Nanophyto xpref2d = 0.45 ! Microzoo preference for Diatoms xkgraz = 20.E-6 ! half sturation constant for grazing epsher = 0.33 ! Efficiency of microzoo growth sigma1 = 0.6 ! Fraction of microzoo excretion as DOM unass = 0.3 ! non assimilated fraction of phyto by zoo / !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' &nampisrem ! parameters for remineralization !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, xremik = 0.3 ! remineralization rate of DOC xremip = 0.025 ! remineralisation rate of POC nitrif = 0.05 ! NH4 nitrification rate xsirem = 0.015 ! remineralization rate of Si xlam1 = 0.005 ! scavenging rate of Iron oxymin = 1.E-6 ! Half-saturation constant for anoxia / !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' &nampiscal ! parameters for Calcite chemistry !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, kdca = 0.327e3 ! calcite dissolution rate constant (1/time) nca = 1. ! order of dissolution reaction (dimensionless) / !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' &nampissed ! parameters for inputs deposition !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, ln_dustfer = .true. ! boolean for dust input from the atmosphere ln_river = .false. ! boolean for river input of nutrients ln_ndepo = .true. ! boolean for atmospheric deposition of N ln_sedinput = .true. ! boolean for Fe input from sediments sedfeinput = 1E-9 ! Coastal release of Iron dustsolub = 0.014 ! Solubility of the dust / !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' &nampiskrp ! Kriest parameterization : parameters "key_kriest" !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, xkr_eta = 1.17 ! Sinking exponent xkr_zeta = 2.28 ! N content exponent xkr_mass_min = 0.0002 ! Minimum mass for Aggregates xkr_mass_max = 1. ! Maximum mass for Aggregates / !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' &nampiskrs ! Kriest parameterization : size classes "key_kriest" !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, xkr_sfact = 942. ! Sinking factor xkr_stick = 0.5 ! Stickiness xkr_nnano = 2.337 ! Nbr of cell in nano size class xkr_ndiat = 3.718 ! Nbr of cell in diatoms size class xkr_nmeso = 7.147 ! Nbr of cell in mesozoo size class xkr_naggr = 9.877 ! Nbr of cell in aggregates size class / !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' &nampisdia ! additional 2D/3D tracers diagnostics ("key_trc_diaadd") !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, nwritedia = 5475 ! time step frequency for tracers diagnostics ! ! ! name ! title of the field ! units ! ! ! ! ! ! pisdia2d(1) = 'Cflx ' , 'DIC flux ', 'molC/m2/s ' pisdia2d(2) = 'Oflx ' , 'Oxygen flux ', 'molC/m2/s ' pisdia2d(3) = 'Kg ' , 'Gas transfer ', 'mol/m2/s/uatm' pisdia2d(4) = 'Delc ' , 'Delta CO2 ', 'uatm ' pisdia2d(5) = 'PMO ' , 'POC export ', 'molC/m2/s ' pisdia2d(6) = 'PMO2 ' , 'GOC export ', 'molC/m2/s ' pisdia2d(7) = 'ExpFe1 ' , 'Nano iron export ', 'molFe/m2/s ' pisdia2d(8) = 'ExpFe2 ' , 'Diatoms iron export ', 'molFe/m2/s ' pisdia2d(9) = 'ExpSi ' , 'Silicate export ', 'molSi/m2/s ' pisdia2d(10) = 'ExpCaCO3 ' , 'Calcite export ', 'molC/m2/s ' pisdia2d(11) = 'heup ' , 'euphotic layer depth ', 'm ' pisdia2d(12) = 'Fedep ' , 'Iron dep ', 'molFe/m2/s ' pisdia2d(13) = 'Nfix ' , 'Nitrogen Fixation ', 'molN/m2/s ' pisdia3d(1) = 'PH ' , 'PH ', '- ' pisdia3d(2) = 'CO3 ' , 'Bicarbonates ', 'mol/l ' pisdia3d(3) = 'CO3sat ' , 'CO3 saturation ', 'mol/l ' pisdia3d(4) = 'PAR ' , 'light penetration ', 'W/m2 ' pisdia3d(5) = 'PPPHY ' , 'Primary production of nanophyto ', 'molC/m3/s ' pisdia3d(6) = 'PPPHY2 ' , 'Primary production of diatoms ', 'molC/m3/s ' pisdia3d(7) = 'PPNEWN ' , 'New Primary production of nano ', 'molC/m3/s ' pisdia3d(8) = 'PPNEWD ' , 'New Primary production of diat ', 'molC/m3/s ' pisdia3d(9) = 'PBSi ' , 'Primary production of Si diatoms ', 'molSi/m3/s ' pisdia3d(10) = 'PFeN ' , 'Primary production of nano iron ', 'molFe/m3/s ' pisdia3d(11) = 'PFeD ' , 'Primary production of diatoms iron', 'molFe/m3/s ' / !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' &nampisdmp ! Damping !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, ln_pisdmp = .true. ! Relaxation fo some tracers to a mean value ln_pisclo = .false. ! Restoring of tracer to initial value on closed sea ("key_dtatrc") /