#/bin/bash #! #PBS -N nemo_sette #PBS -l walltime=00:30:00 #PBS -j oe #PBS -q normal #PBS -V #PBS -l SELECT export PBS_O_WORKDIR=$(readlink -f $PBS_O_WORKDIR) export OMP_NUM_THREADS=1 cd $PBS_O_WORKDIR export XIO_HOME=$xios_path # echo " "; export OMP_NUM_THREADS=1 O_PER_NODE=32 X_PER_NODE=4 OCORES=NPROCS XCORES=NXIOPROCS if [ $OCORES -le 32 ] ; then O_PER_NODE=$OCORES; fi export SETTE_DIR=DEF_SETTE_DIR ############################################################### # # # load sette functions (only post_test_tidyup needed) # . ${SETTE_DIR}/all_functions.sh ############################################################### # # Don't remove neither change the following line # BODY # # Test specific settings. Do not hand edit these lines; the fcm_job.sh script will set these # (via sed operating on this template job file). Note that the number of compute nodes required # is also set by the fcm_job.sh on the PBS select header line above. # # These variables are needed by post_test_tidyup function in all_functions.sh # export INPUT_DIR=DEF_INPUT_DIR export CONFIG_DIR=DEF_CONFIG_DIR export TOOLS_DIR=DEF_TOOLS_DIR export NEMO_VALIDATION_DIR=DEF_NEMO_VALIDATION export NEW_CONF=DEF_NEW_CONF export CMP_NAM=DEF_CMP_NAM export TEST_NAME=DEF_TEST_NAME export EXE_DIR=DEF_EXE_DIR ulimit -c unlimited ulimit -s unlimited export FORT_FMT_RECL=132 # # end of set up ############################################################### # # change to the working directory # cd $EXE_DIR echo Directory is `pwd` if [ $XCORES -gt 0 ]; then # # Run MPMD case # #XIOS will run on a separate node so will run in parallel queue if [ ! -f ./xios_server.exe ] && [ -f ${XIO_HOME}/bin/xios_server.exe ]; then cp ${XIO_HOME}/bin/xios_server.exe . fi if [ ! -f ./xios_server.exe ]; then echo "./xios_server.exe not found" echo "run aborted" exit fi echo time aprun -b -n $XCORES -N $X_PER_NODE ./xios_server.exe : -n $OCORES -N $O_PER_NODE ./nemo time aprun -b -n $XCORES -N $X_PER_NODE ./xios_server.exe : -n $OCORES -N $O_PER_NODE ./nemo # else # # Run SPMD case # echo time aprun -b -n $OCORES -N $O_PER_NODE ./nemo time aprun -b -n $OCORES -N $O_PER_NODE ./nemo fi # # post_test_tidyup # END_BODY # Don't remove neither change the previous line exit