!!>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> !! NEMO/OCE : Reference namelist_ref !! !!>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> !! NEMO/OCE : 1 - Domain & run manager (namrun, namcfg, namdom, namtsd, namcrs, namc1d, namc1d_uvd) !! namelists 2 - Surface boundary (namsbc, namsbc_flx, namsbc_blk, namsbc_cpl, !! namsbc_sas, namtra_qsr, namsbc_rnf, !! namisf, namsbc_apr, !! namsbc_ssr, namsbc_wave, namberg) !! 3 - lateral boundary (namlbc, namagrif, nambdy, nambdy_tide) !! 4 - top/bot boundary (namdrg, namdrg_top, namdrg_bot, nambbc, nambbl) !! 5 - Tracer (nameos, namtra_adv, namtra_ldf, namtra_eiv, namtra_dmp) !! 6 - dynamics (namdyn_adv, namdyn_vor, namdyn_hpg, namdyn_spg, namdyn_ldf) !! 7 - Vertical physics (namzdf, namzdf_ric, namzdf_tke, namzdf_gls, namzdf_iwm) !! 8 - diagnostics (namnc4, namtrd, namspr, namflo, namhsb) !! 9 - Obs & Assim (namobs, nam_asminc) !! 10 - miscellaneous (nammpp, namctl, namsto) !! skeleton built : egrep -E '(^/ *$|^! *$|^ *$|&nam.*|!---.*|!! .*|!!==.*|!!>>>.*)' namelist_ref > namelist_skl !!>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> !!====================================================================== !! *** Domain & Run management namelists *** !! !! !! !! namrun parameters of the run !! namdom space and time domain !! namcfg parameters of the configuration (default: user defined GYRE) !! namwad Wetting and drying (default: OFF) !! namtsd data: temperature & salinity (default: OFF) !! namcrs coarsened grid (for outputs and/or TOP) (ln_crs =T) !! namc1d 1D configuration options ("key_c1d") !! namc1d_dyndmp 1D newtonian damping applied on currents ("key_c1d") !! namc1d_uvd 1D data (currents) ("key_c1d") !!====================================================================== ! !----------------------------------------------------------------------- &namrun ! parameters of the run !----------------------------------------------------------------------- cn_exp = "ISOMIP+" ! experience name nn_it000 = 1 ! first time step nn_itend = 43800 ! last time step (std 5840) nn_date0 = 010101 ! date at nit_0000 nn_stock = 43800 ! frequency of creation of a restart file (modulo referenced to 1) / !----------------------------------------------------------------------- &namdom ! time and space domain !----------------------------------------------------------------------- rn_Dt = 720. / !----------------------------------------------------------------------- &namcfg ! parameters of the configuration (default: use namusr_def in namelist_cfg) !----------------------------------------------------------------------- ln_read_cfg = .true. ! (=T) read the domain configuration file / !----------------------------------------------------------------------- &namtsd ! Temperature & Salinity Data (init/dmp) (default: OFF) !----------------------------------------------------------------------- ! ! =T read T-S fields for: ln_tsd_init = .true. ! ocean initialisation ln_tsd_dmp = .true. ! T-S restoring (see namtra_dmp) ! cn_dir = './' ! root directory for the T-S data location !___________!_________________________!___________________!___________!_____________!________!___________!__________________!__________!_______________! ! ! file name ! frequency (hours) ! variable ! time interp.! clim ! 'yearly'/ ! weights filename ! rotation ! land/sea mask ! ! ! ! (if <0 months) ! name ! (logical) ! (T/F) ! 'monthly' ! ! pairing ! filename ! sn_tem = 'nemo_base_WARM.nc' , -12. , 'Tinit', .false. , .true. , 'yearly' , '' , '' , '' sn_sal = 'nemo_base_WARM.nc' , -12. , 'Sinit', .false. , .true. , 'yearly' , '' , '' , '' sn_dmpt = 'nemo_base_WARM.nc' , -12. , 'Tinit', .false. , .true. , 'yearly' , '' , '' , '' sn_dmps = 'nemo_base_WARM.nc' , -12. , 'Sinit', .false. , .true. , 'yearly' , '' , '' , '' / !----------------------------------------------------------------------- &namwad ! Wetting and Drying (WaD) (default: OFF) !----------------------------------------------------------------------- / !----------------------------------------------------------------------- &namcrs ! coarsened grid (for outputs and/or TOP) (ln_crs =T) !----------------------------------------------------------------------- / !----------------------------------------------------------------------- &namc1d ! 1D configuration options ("key_c1d" default: PAPA station) !----------------------------------------------------------------------- / !----------------------------------------------------------------------- &namc1d_dyndmp ! U & V newtonian damping ("key_c1d" default: OFF) !----------------------------------------------------------------------- / !----------------------------------------------------------------------- &namc1d_uvd ! data: U & V currents ("key_c1d" default: OFF) !----------------------------------------------------------------------- / !!====================================================================== !! *** Surface Boundary Condition namelists *** !! !! !! !! namsbc surface boundary condition manager (default: NO selection) !! namsbc_flx flux formulation (ln_flx =T) !! namsbc_blk Bulk formulae formulation (ln_blk =T) !! namsbc_cpl CouPLed formulation ("key_oasis3" ) !! namsbc_sas Stand-Alone Surface module (SAS_SRC only) !! namsbc_iif Ice-IF: use observed ice cover (nn_ice = 1 ) !! namtra_qsr penetrative solar radiation (ln_traqsr =T) !! namsbc_ssr sea surface restoring term (for T and/or S) (ln_ssr =T) !! namsbc_rnf river runoffs (ln_rnf =T) !! namsbc_apr Atmospheric Pressure (ln_apr_dyn =T) !! namsbc_wave external fields from wave model (ln_wave =T) !! namberg iceberg floats (ln_icebergs=T) !!====================================================================== ! !----------------------------------------------------------------------- &namsbc ! Surface Boundary Condition manager (default: NO selection) !----------------------------------------------------------------------- nn_fsbc = 1 ! frequency of SBC module call ln_usr = .true. ! user defined formulation (T => check usrdef_sbc) nn_fwb = 4 / !----------------------------------------------------------------------- &namsbc_flx ! surface boundary condition : flux formulation (ln_flx =T) !----------------------------------------------------------------------- / !----------------------------------------------------------------------- &namsbc_blk ! namsbc_blk generic Bulk formula (ln_blk =T) !----------------------------------------------------------------------- / !----------------------------------------------------------------------- &namsbc_cpl ! coupled ocean/atmosphere model ("key_oasis3") !----------------------------------------------------------------------- / !----------------------------------------------------------------------- &namsbc_sas ! Stand-Alone Surface module: ocean data (SAS_SRC only) !----------------------------------------------------------------------- / !----------------------------------------------------------------------- &namsbc_iif ! Ice-IF : use observed ice cover (nn_ice = 1) !----------------------------------------------------------------------- / !----------------------------------------------------------------------- &namtra_qsr ! penetrative solar radiation (ln_traqsr =T) !----------------------------------------------------------------------- / !----------------------------------------------------------------------- &namsbc_ssr ! surface boundary condition : sea surface restoring (ln_ssr =T) !----------------------------------------------------------------------- / !----------------------------------------------------------------------- &namsbc_rnf ! runoffs (ln_rnf =T) !----------------------------------------------------------------------- / !----------------------------------------------------------------------- &namsbc_apr ! Atmospheric pressure used as ocean forcing (ln_apr_dyn =T) !----------------------------------------------------------------------- / !----------------------------------------------------------------------- &namisf ! Top boundary layer (ISF) (default: OFF) !----------------------------------------------------------------------- ! ! ---------------- ice shelf load ------------------------------- ! cn_isfload = 'uniform' ! scheme to compute ice shelf load (ln_isfcav = .true. in domain_cfg.nc) rn_isfload_T = -1.0 rn_isfload_S = 34.2 ! ! ---------------- ice shelf melt formulation ------------------------------- ! ln_isf = .true. ! activate ice shelf module ln_isfdebug = .false. ! add debug print in ISF code (global min/max/sum of specific variable) cn_isfdir = './' ! directory for all ice shelf input file ! ! ---------------- cavities opened ------------------------------- ! ln_isfcav_mlt = .true. ! ice shelf melting into the cavity (need ln_isfcav = .true. in domain_cfg.nc) cn_isfcav_mlt = '3eq' ! ice shelf melting formulation (spe/2eq/3eq/oasis) ! ! spe = fwfisf is read from a forcing field ! ! 2eq = ISOMIP like: 2 equations formulation (Hunter et al., 2006) ! ! 3eq = ISOMIP+ like: 3 equations formulation (Asay-Davis et al., 2015) ! ! oasis = fwfisf is given by oasis and pattern by file sn_isfcav_fwf ! ! cn_isfcav_mlt = 2eq or 3eq cases: cn_gammablk = 'vel' ! scheme to compute gammat/s (spe,ad15,hj99) ! ! spe = constant transfert velocity (rn_gammat0, rn_gammas0) ! ! vel = velocity dependent transfert velocity (u* * gammat/s) (Asay-Davis et al. 2016 for a short description) ! ! vel_stab = velocity and stability dependent transfert coeficient (Holland et al. 1999 for a complete description) rn_gammat0 = 0.0215 ! gammat coefficient used in blk formula rn_gammas0 = 0.614e-3 ! gammas coefficient used in blk formula rn_vtide = 0.01 ! tidal velocity [m/s] ! rn_htbl = 20. ! thickness of the top boundary layer (Losh et al. 2008) ! ! 0 => thickness of the tbl = thickness of the first wet cell ! !* 'spe' and 'oasis' case !___________!_____________!___________________!___________!_____________!_________!___________!__________!__________!_______________! ! ! file name ! frequency (hours) ! variable ! time interp.! clim ! 'yearly'/ ! weights ! rotation ! land/sea mask ! ! ! ! (if <0 months) ! name ! (logical) ! (T/F) ! 'monthly' ! filename ! pairing ! filename ! sn_isfcav_fwf = 'isfmlt_cav', -12. , 'fwflisf' , .false. , .true. , 'yearly' , '' , '' , '' ! ! ! ---------------- ice sheet coupling ------------------------------- ! ln_isfcpl = .false. nn_drown = 10 ! number of iteration of the extrapolation loop (fill the new wet cells) ln_isfcpl_cons = .false. / !----------------------------------------------------------------------- &namsbc_wave ! External fields from wave model (ln_wave=T) !----------------------------------------------------------------------- / !----------------------------------------------------------------------- &namberg ! iceberg parameters (default: OFF) !----------------------------------------------------------------------- / !!====================================================================== !! *** Lateral boundary condition *** !! !! !! !! namlbc lateral momentum boundary condition (default: NO selection) !! namagrif agrif nested grid (read by child model only) ("key_agrif") !! nam_tide Tidal forcing (default: OFF) !! nambdy Unstructured open boundaries (default: OFF) !! nambdy_dta Unstructured open boundaries - external data (see nambdy) !! nambdy_tide tidal forcing at open boundaries (default: OFF) !!====================================================================== ! !----------------------------------------------------------------------- &namlbc ! lateral momentum boundary condition (default: NO selection) !----------------------------------------------------------------------- ! ! free slip ! partial slip ! no slip ! strong slip rn_shlat = 2. ! shlat = 0 ! 0 < shlat < 2 ! shlat = 2 ! 2 < shlat / !----------------------------------------------------------------------- &namagrif ! AGRIF zoom ("key_agrif") !----------------------------------------------------------------------- / !----------------------------------------------------------------------- &nam_tide ! tide parameters (default: OFF) !----------------------------------------------------------------------- / !----------------------------------------------------------------------- &nambdy ! unstructured open boundaries (default: OFF) !----------------------------------------------------------------------- / !----------------------------------------------------------------------- &nambdy_dta ! open boundaries - external data (see nam_bdy) !----------------------------------------------------------------------- / !----------------------------------------------------------------------- &nambdy_tide ! tidal forcing at open boundaries (default: OFF) !----------------------------------------------------------------------- / !!====================================================================== !! *** Top/Bottom boundary condition *** !! !! !! !! namdrg top/bottom drag coefficient (default: NO selection) !! namdrg_top top friction (ln_OFF=F & ln_isfcav=T) !! namdrg_bot bottom friction (ln_OFF=F) !! nambbc bottom temperature boundary condition (default: OFF) !! nambbl bottom boundary layer scheme (default: OFF) !!====================================================================== ! !----------------------------------------------------------------------- &namdrg ! top/bottom drag coefficient (default: NO selection) !----------------------------------------------------------------------- ln_non_lin = .true. ! non-linear drag: Cd = Cd0 |U| / !----------------------------------------------------------------------- &namdrg_top ! TOP friction (ln_OFF =F & ln_isfcav=T) !----------------------------------------------------------------------- rn_Cd0 = 2.5e-3 ! drag coefficient [-] rn_ke0 = 0.0e-3 ! background kinetic energy [m2/s2] (non-linear cases) / !----------------------------------------------------------------------- &namdrg_bot ! BOTTOM friction (ln_OFF =F) !----------------------------------------------------------------------- rn_Cd0 = 2.5e-3 ! drag coefficient [-] rn_ke0 = 0.0e-3 ! background kinetic energy [m2/s2] (non-linear cases) / !----------------------------------------------------------------------- &nambbc ! bottom temperature boundary condition (default: OFF) !----------------------------------------------------------------------- / !----------------------------------------------------------------------- &nambbl ! bottom boundary layer scheme (default: OFF) !----------------------------------------------------------------------- / !!====================================================================== !! Tracer (T-S) namelists !! !! !! !! nameos equation of state (default: NO selection) !! namtra_adv advection scheme (default: NO selection) !! namtra_ldf lateral diffusion scheme (default: NO selection) !! namtra_mle mixed layer eddy param. (Fox-Kemper param.) (default: OFF) !! namtra_eiv eddy induced velocity param. (default: OFF) !! namtra_dmp T & S newtonian damping (default: OFF) !!====================================================================== ! !----------------------------------------------------------------------- &nameos ! ocean Equation Of Seawater (default: NO selection) !----------------------------------------------------------------------- ln_leos = .true. ! = Use L-EOS (linear Eq.) ! ! ! S-EOS coefficients (ln_seos=T): ! ! rd(T,S,Z)*rau0 = -a0*(1+.5*lambda*dT+mu*Z+nu*dS)*dT+b0*dS ! ! L-EOS coefficients (ln_seos=T): ! ! rd(T,S,Z)*rau0 = rau0*(-a0*dT+b0*dS) rn_a0 = 3.7330e-5 ! thermal expension coefficient rn_b0 = 7.8430e-4 ! saline expension coefficient / !----------------------------------------------------------------------- &namtra_adv ! advection scheme for tracer (default: NO selection) !----------------------------------------------------------------------- ln_traadv_fct = .true. ! FCT scheme / !----------------------------------------------------------------------- &namtra_ldf ! lateral diffusion scheme for tracers (default: NO selection) !----------------------------------------------------------------------- ! ! Operator type: ln_traldf_lap = .true. ! laplacian operator ! ! ! Direction of action: ln_traldf_iso = .true. ! iso-neutral (standard operator) ! ! ! Coefficients: nn_aht_ijk_t = 0 ! ! time invariant coefficients: aht0 = 1/2 Ud*Ld (lap case) ! ! or = 1/12 Ud*Ld^3 (blp case) rn_Ud = 0.01 ! lateral diffusive velocity [m/s] (nn_aht_ijk_t= 0, 10, 20, 30) rn_Ld = 200. ! lateral diffusive length [m] (nn_aht_ijk_t= 0, 10) / !----------------------------------------------------------------------- &namtra_mle ! mixed layer eddy parametrisation (Fox-Kemper) (default: OFF) !----------------------------------------------------------------------- / !----------------------------------------------------------------------- &namtra_eiv ! eddy induced velocity param. (default: OFF) !----------------------------------------------------------------------- / !----------------------------------------------------------------------- &namtra_dmp ! tracer: T & S newtonian damping (default: OFF) !----------------------------------------------------------------------- ln_tradmp = .true. ! add a damping term (using resto.nc coef.) / !!====================================================================== !! *** Dynamics namelists *** !! !! !! !! nam_vvl vertical coordinate options (default: z-star) !! namdyn_adv formulation of the momentum advection (default: NO selection) !! namdyn_vor advection scheme (default: NO selection) !! namdyn_hpg hydrostatic pressure gradient (default: NO selection) !! namdyn_spg surface pressure gradient (default: NO selection) !! namdyn_ldf lateral diffusion scheme (default: NO selection) !! namdta_dyn offline TOP: dynamics read in files (OFF_SRC only) !!====================================================================== ! !----------------------------------------------------------------------- &nam_vvl ! vertical coordinate options (default: z-star) !----------------------------------------------------------------------- / !----------------------------------------------------------------------- &namdyn_adv ! formulation of the momentum advection (default: NO selection) !----------------------------------------------------------------------- ln_dynadv_vec = .true. ! vector form - 2nd centered scheme / !----------------------------------------------------------------------- &namdyn_vor ! Vorticity / Coriolis scheme (default: NO selection) !----------------------------------------------------------------------- ln_dynvor_een = .true. ! energy & enstrophy scheme / !----------------------------------------------------------------------- &namdyn_hpg ! Hydrostatic pressure gradient option (default: NO selection) !----------------------------------------------------------------------- ln_hpg_isf = .true. ! s-coordinate (sco ) adapted to isf / !----------------------------------------------------------------------- &namdyn_spg ! surface pressure gradient (default: NO selection) !----------------------------------------------------------------------- ln_dynspg_ts = .true. ! split-explicit free surface / !----------------------------------------------------------------------- &namdyn_ldf ! lateral diffusion on momentum (default: NO selection) !----------------------------------------------------------------------- ! ! Type of the operator : ln_dynldf_lap = .true. ! laplacian operator ! ! Direction of action : ln_dynldf_hor = .true. ! horizontal (geopotential) ! ! Coefficient nn_ahm_ijk_t = 0 ! space/time variation of eddy coefficient : ! ! = 0 constant ! ! time invariant coefficients : ahm = 1/2 Uv*Lv (lap case) rn_Uv = 0.1 ! lateral viscous velocity [m/s] (nn_ahm_ijk_t= 0, 10, 20, 30) rn_Lv = 120 ! lateral viscous length [m] (nn_ahm_ijk_t= 0, 10) / !----------------------------------------------------------------------- &namdta_dyn ! offline ocean input files (OFF_SRC only) !----------------------------------------------------------------------- / !!====================================================================== !! vertical physics namelists !! !! !! !! namzdf vertical physics manager (default: NO selection) !! namzdf_ric richardson number vertical mixing (ln_zdfric=T) !! namzdf_tke TKE vertical mixing (ln_zdftke=T) !! namzdf_gls GLS vertical mixing (ln_zdfgls=T) !! namzdf_osm OSM vertical diffusion (ln_zdfosm=T) !! namzdf_iwm tidal mixing parameterization (ln_zdfiwm=T) !!====================================================================== ! !----------------------------------------------------------------------- &namzdf ! vertical physics manager (default: NO selection) !----------------------------------------------------------------------- ! ! ! type of vertical closure (required) ln_zdfcst = .true. ! constant mixing ! ! ! convection ln_zdfevd = .true. ! enhanced vertical diffusion nn_evdm = 1 ! apply on tracer (=0) or on tracer and momentum (=1) rn_evd = 0.1 ! mixing coefficient [m2/s] ! ! ! coefficients rn_avm0 = 1.0e-3 ! vertical eddy viscosity [m2/s] (background Kz if ln_zdfcst=F) rn_avt0 = 5.0e-5 ! vertical eddy diffusivity [m2/s] (background Kz if ln_zdfcst=F) nn_avb = 0 ! profile for background avt & avm (=1) or not (=0) nn_havtb = 0 ! horizontal shape for avtb (=1) or not (=0) / !----------------------------------------------------------------------- &namzdf_ric ! richardson number dependent vertical diffusion (ln_zdfric =T) !----------------------------------------------------------------------- / !----------------------------------------------------------------------- &namzdf_tke ! turbulent eddy kinetic dependent vertical diffusion (ln_zdftke =T) !----------------------------------------------------------------------- / !----------------------------------------------------------------------- &namzdf_gls ! GLS vertical diffusion (ln_zdfgls =T) !----------------------------------------------------------------------- / !----------------------------------------------------------------------- &namzdf_osm ! OSM vertical diffusion (ln_zdfosm =T) !----------------------------------------------------------------------- / !----------------------------------------------------------------------- &namzdf_iwm ! internal wave-driven mixing parameterization (ln_zdfiwm =T) !----------------------------------------------------------------------- / !!====================================================================== !! *** Diagnostics namelists *** !! !! !! !! namtrd dynamics and/or tracer trends (default: OFF) !! namptr Poleward Transport Diagnostics (default: OFF) !! namhsb Heat and salt budgets (default: OFF) !! namdiu Cool skin and warm layer models (default: OFF) !! namdiu Cool skin and warm layer models (default: OFF) !! namflo float parameters ("key_float") !! nam_diaharm Harmonic analysis of tidal constituents ("key_diaharm") !! namdct transports through some sections ("key_diadct") !! nam_diatmb Top Middle Bottom Output (default: OFF) !! nam_dia25h 25h Mean Output (default: OFF) !! namnc4 netcdf4 chunking and compression settings ("key_netcdf4") !!====================================================================== ! !----------------------------------------------------------------------- &namtrd ! trend diagnostics (default: OFF) !----------------------------------------------------------------------- / !----------------------------------------------------------------------- &namptr ! Poleward Transport Diagnostic (default: OFF) !----------------------------------------------------------------------- / !----------------------------------------------------------------------- &namhsb ! Heat and salt budgets (default: OFF) !----------------------------------------------------------------------- / !----------------------------------------------------------------------- &namdiu ! Cool skin and warm layer models (default: OFF) !----------------------------------------------------------------------- / !----------------------------------------------------------------------- &namflo ! float parameters ("key_float") !----------------------------------------------------------------------- / !----------------------------------------------------------------------- &nam_diaharm ! Harmonic analysis of tidal constituents ("key_diaharm") !----------------------------------------------------------------------- / !----------------------------------------------------------------------- &namdct ! transports through some sections ("key_diadct") !----------------------------------------------------------------------- / !----------------------------------------------------------------------- &nam_diatmb ! Top Middle Bottom Output (default: OFF) !----------------------------------------------------------------------- / !----------------------------------------------------------------------- &nam_dia25h ! 25h Mean Output (default: OFF) !----------------------------------------------------------------------- / !----------------------------------------------------------------------- &namnc4 ! netcdf4 chunking and compression settings ("key_netcdf4") !----------------------------------------------------------------------- / !!====================================================================== !! *** Observation & Assimilation *** !! !! !! !! namobs observation and model comparison (default: OFF) !! nam_asminc assimilation increments ('key_asminc') !!====================================================================== ! !----------------------------------------------------------------------- &namobs ! observation usage switch (default: OFF) !----------------------------------------------------------------------- / !----------------------------------------------------------------------- &nam_asminc ! assimilation increments ('key_asminc') !----------------------------------------------------------------------- / !!====================================================================== !! *** Miscellaneous namelists *** !! !! !! !! nammpp Massively Parallel Processing ("key_mpp_mpi") !! namctl Control prints (default: OFF) !! namsto Stochastic parametrization of EOS (default: OFF) !!====================================================================== ! !----------------------------------------------------------------------- &nammpp ! Massively Parallel Processing ("key_mpp_mpi") !----------------------------------------------------------------------- / !----------------------------------------------------------------------- &namctl ! Control prints (default: OFF) !----------------------------------------------------------------------- / !----------------------------------------------------------------------- &namsto ! Stochastic parametrization of EOS (default: OFF) !----------------------------------------------------------------------- /