####### Commits ####### ------------------------------------------------------------------------ r12389 | smueller | 2020-02-14 17:56:54 +0100 (ven., 14 févr. 2020) | 5 lines Pinning of revision numbers in externals definitions and adjustments of the documentation (version numbers, download URL, etc.) for the latest point release of NEMO version 4.0 These changes should have been made in NEMO/releases/release-4.0-HEAD prior to creating the tag NEMO/releases/release-4.0.2. ------------------------------------------------------------------------ r12376 | acc | 2020-02-12 15:06:23 +0100 (mer., 12 févr. 2020) | 1 line Immediate tag copy of 4.0-HEAD as release-4.0.2. From now on point releases (such as this) should remain unchanged. Bug fixes or additions in response to tickets should be done on the 4.0-HEAD branch and a new point release made when appropriate ------------------------------------------------------------------------ r12375 | acc | 2020-02-12 15:00:13 +0100 (mer., 12 févr. 2020) | 1 line Copied trunk@12367 to releases/release-4.0-HEAD before merging in 2019 developments ------------------------------------------------------------------------ r12367 | clem | 2020-02-11 19:37:34 +0100 (mar., 11 févr. 2020) | 1 line solve ticket #2380 ------------------------------------------------------------------------ r12366 | jchanut | 2020-02-11 12:17:24 +0100 (mar., 11 févr. 2020) | 2 lines #2317, revert to the correct sign for asselin term on e3t and runoffs ------------------------------------------------------------------------ r12337 | cetlod | 2020-01-27 14:47:23 +0100 (lun., 27 janv. 2020) | 1 line trunk : defining ice transport component on U/V grid ; otherwise grid transformation fails when trying to compute strait ------------------------------------------------------------------------ r12331 | cetlod | 2020-01-17 09:00:10 +0100 (ven., 17 janv. 2020) | 1 line trunk : Minor changes on grid_def ------------------------------------------------------------------------ r12300 | cetlod | 2020-01-06 09:31:02 +0100 (lun., 06 janv. 2020) | 1 line Minor fix on CFC to avoid bad interpolation ------------------------------------------------------------------------ r12296 | mathiot | 2019-12-30 20:34:01 +0100 (lun., 30 déc. 2019) | 1 line fix #2360 ------------------------------------------------------------------------ r12294 | mathiot | 2019-12-30 19:46:59 +0100 (lun., 30 déc. 2019) | 1 line fix #2359 ------------------------------------------------------------------------ r12292 | mathiot | 2019-12-30 18:07:45 +0100 (lun., 30 déc. 2019) | 1 line fix #2358 ------------------------------------------------------------------------ r12291 | mathiot | 2019-12-30 17:43:47 +0100 (lun., 30 déc. 2019) | 1 line fix icb reproducibility into the trunk (ticket #2238) ------------------------------------------------------------------------ r12288 | smasson | 2019-12-26 16:22:36 +0100 (jeu., 26 déc. 2019) | 1 line trunk : minor bugfix/cleaning ------------------------------------------------------------------------ r12284 | cetlod | 2019-12-23 12:05:58 +0100 (lun., 23 déc. 2019) | 1 line trunk:give the right unit to ocean carbon flux ------------------------------------------------------------------------ r12283 | cetlod | 2019-12-23 11:40:48 +0100 (lun., 23 déc. 2019) | 1 line trunk:revert some changes done in sbccpl.F90 ------------------------------------------------------------------------ r12280 | cetlod | 2019-12-21 11:42:44 +0100 (sam., 21 déc. 2019) | 1 line bugfix in trunk : initialise local array in PISCES, see ticket #2357 ------------------------------------------------------------------------ r12279 | jchanut | 2019-12-20 14:36:15 +0100 (ven., 20 déc. 2019) | 2 lines #2317, changes for LFRA freshwater correction ------------------------------------------------------------------------ r12278 | cetlod | 2019-12-20 13:41:08 +0100 (ven., 20 déc. 2019) | 1 line trunk : minor correction in use of diaptr ------------------------------------------------------------------------ r12277 | cetlod | 2019-12-20 12:54:47 +0100 (ven., 20 déc. 2019) | 1 line trunk : Minor corrections ------------------------------------------------------------------------ r12276 | cetlod | 2019-12-20 12:14:26 +0100 (ven., 20 déc. 2019) | 1 line trunk : merge in some cmip6 diagnostics into the trunk before copying it to release-4.0.2(-head). SETTE tests are OK and the is no difference with the revision 12248 ------------------------------------------------------------------------ r12248 | smasson | 2019-12-13 17:33:53 +0100 (ven., 13 déc. 2019) | 1 line trunk : clean useless warnings in fldread ------------------------------------------------------------------------ r12232 | cetlod | 2019-12-13 09:25:14 +0100 (ven., 13 déc. 2019) | 1 line trunk : bugfixes on grazing diagnostics, see ticket #2260 ------------------------------------------------------------------------ r12230 | smasson | 2019-12-12 18:15:21 +0100 (jeu., 12 déc. 2019) | 1 line trunk: missing part in supressing diatmb, see #1759 ------------------------------------------------------------------------ r12214 | smasson | 2019-12-12 16:46:06 +0100 (jeu., 12 déc. 2019) | 1 line trunk: put back 1 line accidentally deleted by [12206] ------------------------------------------------------------------------ r12213 | smasson | 2019-12-12 16:32:02 +0100 (jeu., 12 déc. 2019) | 1 line trunk: update xml files to define missing grids, see #2255 ------------------------------------------------------------------------ r12208 | smasson | 2019-12-12 12:20:21 +0100 (jeu., 12 déc. 2019) | 1 line trunk: move back cpp_AGRIF_DEMO and cpp_VORTEX mofified by [12206] ------------------------------------------------------------------------ r12206 | smasson | 2019-12-12 12:14:55 +0100 (jeu., 12 déc. 2019) | 1 line trunk: supress diatmb as it was bugged and already coded in diawri, see #1759 ------------------------------------------------------------------------ r12201 | smasson | 2019-12-12 09:51:33 +0100 (jeu., 12 déc. 2019) | 1 line trunk: correct [12194], see #2265 ------------------------------------------------------------------------ r12198 | smasson | 2019-12-12 09:16:14 +0100 (jeu., 12 déc. 2019) | 1 line trunk: bugfix in ldf_slp_triad, see #1928 ------------------------------------------------------------------------ r12197 | clem | 2019-12-12 00:46:12 +0100 (jeu., 12 déc. 2019) | 1 line correct ticket #2349 ------------------------------------------------------------------------ r12196 | smasson | 2019-12-11 18:13:20 +0100 (mer., 11 déc. 2019) | 1 line trunk: limit bottom slope to 1/2*e3/e1 in ldf_slp, see #1180 ------------------------------------------------------------------------ r12194 | smasson | 2019-12-11 17:21:56 +0100 (mer., 11 déc. 2019) | 1 line trunk: minor bugfix in ldfdyn, see #2265 ------------------------------------------------------------------------ r12171 | smasson | 2019-12-11 10:36:23 +0100 (mer., 11 déc. 2019) | 1 line trunk: minor cleaning in sbccpl, see #2313 ------------------------------------------------------------------------ r12168 | smasson | 2019-12-11 10:16:47 +0100 (mer., 11 déc. 2019) | 1 line trunk: minor bugfix in sbcrfn, see #2340 ------------------------------------------------------------------------ r12158 | jchanut | 2019-12-10 16:33:19 +0100 (mar., 10 déc. 2019) | 2 lines #2130, correct initial day if not starting at 00Z ------------------------------------------------------------------------ r12148 | smasson | 2019-12-10 14:59:27 +0100 (mar., 10 déc. 2019) | 1 line trunk: minor bugfix in bdyvol, see #2345 ------------------------------------------------------------------------ r12142 | smasson | 2019-12-10 12:50:13 +0100 (mar., 10 déc. 2019) | 1 line trunk: minor bugfix in bdyini, see #2342 ------------------------------------------------------------------------ r12141 | smasson | 2019-12-10 12:43:20 +0100 (mar., 10 déc. 2019) | 1 line trunk: minor bugfix in divhor, see #2347 ------------------------------------------------------------------------ r12138 | smasson | 2019-12-10 12:26:06 +0100 (mar., 10 déc. 2019) | 1 line trunk: minor AGRIF bugfix, see #2322 ------------------------------------------------------------------------ r12137 | smasson | 2019-12-10 12:23:47 +0100 (mar., 10 déc. 2019) | 1 line trunk: missing part of commit [12132] ------------------------------------------------------------------------ r12136 | cetlod | 2019-12-10 11:57:36 +0100 (mar., 10 déc. 2019) | 1 line TOP updates ------------------------------------------------------------------------ r12132 | smasson | 2019-12-10 11:38:28 +0100 (mar., 10 déc. 2019) | 1 line trunk: coupling interface bugfixes, part 1 ------------------------------------------------------------------------ r12121 | cetlod | 2019-12-09 12:19:22 +0100 (lun., 09 déc. 2019) | 1 line trunk:revert commit on changeset 12025 ------------------------------------------------------------------------ r12072 | jchanut | 2019-12-05 16:07:50 +0100 (jeu., 05 déc. 2019) | 2 lines #2346, correct lbc call for depths ------------------------------------------------------------------------ r12055 | jchanut | 2019-12-04 17:20:14 +0100 (mer., 04 déc. 2019) | 2 lines #2327 ------------------------------------------------------------------------ r12052 | jchanut | 2019-12-04 16:59:19 +0100 (mer., 04 déc. 2019) | 2 lines #2335, add missing lbc call with wad ------------------------------------------------------------------------ r12049 | jchanut | 2019-12-04 16:36:36 +0100 (mer., 04 déc. 2019) | 2 lines #2334, bdy init from initial T/S ------------------------------------------------------------------------ r12026 | davestorkey | 2019-12-02 15:54:57 +0100 (lun., 02 déc. 2019) | 4 lines Small bug fixes to to initial Euler timestep and OFF timestepping to ensure bit comparison the IMMERSE_first_steps branch with the trunk. Tickets #2310, #2311, #2343 apply. ------------------------------------------------------------------------ r12025 | cetlod | 2019-12-02 14:41:09 +0100 (lun., 02 déc. 2019) | 1 line Put back original namelist ice values of trunk revision 11640 ------------------------------------------------------------------------ r11993 | cetlod | 2019-11-28 11:20:53 +0100 (jeu., 28 nov. 2019) | 1 line trunk : undo bad commit. Oups ------------------------------------------------------------------------ r11989 | cetlod | 2019-11-27 16:13:52 +0100 (mer., 27 nov. 2019) | 1 line cmip6 diag : finalisation of CMIP6 diags implementation ------------------------------------------------------------------------ r11907 | nicolasmartin | 2019-11-14 18:15:03 +0100 (jeu., 14 nov. 2019) | 2 lines Implementation of syntax highlighting for inline code ------------------------------------------------------------------------ r11899 | smasson | 2019-11-13 18:14:14 +0100 (mer., 13 nov. 2019) | 1 line trunk: bugfix in usrdef_nam.F90 for CANAL test case ------------------------------------------------------------------------ r11891 | smasson | 2019-11-12 16:17:18 +0100 (mar., 12 nov. 2019) | 1 line trunk: bugfix of [11879], see #2230 ------------------------------------------------------------------------ r11879 | smasson | 2019-11-08 21:36:58 +0100 (ven., 08 nov. 2019) | 1 line trunk: fix in bdydta, same results but prevents that all subdomains read all bdy ------------------------------------------------------------------------ r11848 | jchanut | 2019-11-04 11:48:01 +0100 (lun., 04 nov. 2019) | 2 lines 1) Correct typo in OVERFLOW namelists 2) add implicit vertical advection in default namelist (so that it runs with 4th order advection) ------------------------------------------------------------------------ r11821 | acc | 2019-10-29 11:08:08 +0100 (mar., 29 oct. 2019) | 1 line Small correction to trcbdy.F90. This fixes #2324 ------------------------------------------------------------------------ r11818 | jchanut | 2019-10-29 10:23:50 +0100 (mar., 29 oct. 2019) | 2 lines Fixes to compile with gcc 9.2 ------------------------------------------------------------------------ r11814 | smasson | 2019-10-28 11:18:41 +0100 (lun., 28 oct. 2019) | 1 line trunk: fix typo in namsbc_cpl ------------------------------------------------------------------------ r11812 | smasson | 2019-10-28 11:14:40 +0100 (lun., 28 oct. 2019) | 1 line trunk: add missing USE phycst in icedyn_adv_pra, needed when not using key_iomput ------------------------------------------------------------------------ r11793 | jchanut | 2019-10-25 12:25:20 +0200 (ven., 25 oct. 2019) | 2 lines #2321, missing init for online vertical interpolation of bdy data ------------------------------------------------------------------------ r11792 | gsamson | 2019-10-25 12:16:21 +0200 (ven., 25 oct. 2019) | 1 line update namelist_ice_cfg in AGRIF_DEMO cfg as in ORCA2_ICE_PISCES cfg to pass AGRIF-ORCA2 corruption tests in SETTE ------------------------------------------------------------------------ r11780 | nicolasmartin | 2019-10-23 18:08:23 +0200 (mer., 23 oct. 2019) | 3 lines Define fortran as the default language for code highlighting So we only have to define the language in a `code-block` directive for others. ------------------------------------------------------------------------ r11761 | nicolasmartin | 2019-10-22 12:02:46 +0200 (mar., 22 oct. 2019) | 2 lines Create ''unpub'' folder for unpublished READMEs (displayed with `make drafthtml`) ------------------------------------------------------------------------ r11759 | nicolasmartin | 2019-10-21 18:24:58 +0200 (lun., 21 oct. 2019) | 2 lines Review README for data assimilation ------------------------------------------------------------------------ r11754 | nicolasmartin | 2019-10-21 16:25:22 +0200 (lun., 21 oct. 2019) | 2 lines Review README for coupling ------------------------------------------------------------------------ r11753 | nicolasmartin | 2019-10-21 16:21:17 +0200 (lun., 21 oct. 2019) | 2 lines Review README for AGRIF ------------------------------------------------------------------------ r11752 | nicolasmartin | 2019-10-21 16:08:43 +0200 (lun., 21 oct. 2019) | 2 lines Improve the view of todo items by adding the list in the TOC tree ------------------------------------------------------------------------ r11747 | nicolasmartin | 2019-10-21 15:21:48 +0200 (lun., 21 oct. 2019) | 2 lines Review README for diagnostics ------------------------------------------------------------------------ r11745 | nicolasmartin | 2019-10-21 15:00:40 +0200 (lun., 21 oct. 2019) | 2 lines Create symbolic link ''setup.rst'' to ''README'' in `./src/OCE/USR` ------------------------------------------------------------------------ r11743 | nicolasmartin | 2019-10-21 14:57:14 +0200 (lun., 21 oct. 2019) | 2 lines Review README for configuration setup ------------------------------------------------------------------------ r11735 | nicolasmartin | 2019-10-18 19:50:58 +0200 (ven., 18 oct. 2019) | 2 lines Review README for test cases (a gif file mentioned to illustrate CANAL is missing) ------------------------------------------------------------------------ r11734 | nicolasmartin | 2019-10-18 18:46:26 +0200 (ven., 18 oct. 2019) | 2 lines Review README for reference confgiurations ------------------------------------------------------------------------ r11732 | clem | 2019-10-18 18:10:30 +0200 (ven., 18 oct. 2019) | 1 line update trunk from #11730 ------------------------------------------------------------------------ r11731 | clem | 2019-10-18 18:06:28 +0200 (ven., 18 oct. 2019) | 1 line update trunk from #11729 ------------------------------------------------------------------------ r11727 | nicolasmartin | 2019-10-18 17:19:36 +0200 (ven., 18 oct. 2019) | 2 lines Crop caption for AGRIF_DEMO illustration ------------------------------------------------------------------------ r11725 | nicolasmartin | 2019-10-18 16:38:13 +0200 (ven., 18 oct. 2019) | 2 lines Add NOAA picture of PAPA ocean station ------------------------------------------------------------------------ r11724 | nicolasmartin | 2019-10-18 16:34:50 +0200 (ven., 18 oct. 2019) | 2 lines Add image of AMM domain bathymetry extract from Enda's reference paper ------------------------------------------------------------------------ r11723 | nicolasmartin | 2019-10-18 14:33:36 +0200 (ven., 18 oct. 2019) | 2 lines Review of INSTALL.rst ------------------------------------------------------------------------ r11718 | nicolasmartin | 2019-10-18 12:03:11 +0200 (ven., 18 oct. 2019) | 3 lines Rename symlinks to rst files Shortening the internal link syntax with :doc: and making it much readable ------------------------------------------------------------------------ r11713 | nicolasmartin | 2019-10-17 17:49:19 +0200 (jeu., 17 oct. 2019) | 12 lines Revamp TOP README and implement a TODO list Review `tracers.rst` by adding snippets of source files Add ''drafthtml'' target for Makefile related to ''draft'' building tag for sphinx-build to display todo items at the top of the guide homepage Misc: - Use dedicated `:file:` role instead of ```...``` for file or directory - Update BibTeX entries of NEMO reference publications by using `:title:` role - Dump of `RELEASE_NOTES.rst` - New file `todos.rst` to list all items declared with `todo` directive - Modify `conf.py` to add a conditional test for ''draft'' tag ------------------------------------------------------------------------ r11711 | nicolasmartin | 2019-10-17 12:06:25 +0200 (jeu., 17 oct. 2019) | 2 lines Remove external definition to bibtool.rsc for trunk and 4.0.1 ------------------------------------------------------------------------ r11708 | nicolasmartin | 2019-10-16 11:13:01 +0200 (mer., 16 oct. 2019) | 2 lines z ------------------------------------------------------------------------ r11707 | nicolasmartin | 2019-10-16 11:05:06 +0200 (mer., 16 oct. 2019) | 4 lines Review of the rst content In short, new `citations.rst` to have a distinct page for NEMO references and an update of the global directives ------------------------------------------------------------------------ r11706 | nicolasmartin | 2019-10-16 10:51:40 +0200 (mer., 16 oct. 2019) | 5 lines Update files to be compliant with Python 3 (Python 2 no longer available) The compilation of the guide is no longer easy with Python 2 with the need of virtual env to downgrade some dependencies. \\ Last but not least, Python 2 support will expire by the end of the year. ------------------------------------------------------------------------ r11703 | nicolasmartin | 2019-10-14 18:33:28 +0200 (lun., 14 oct. 2019) | 2 lines Update as well the manual namelists ------------------------------------------------------------------------ r11702 | nicolasmartin | 2019-10-14 17:51:45 +0200 (lun., 14 oct. 2019) | 2 lines Restore default path for FontAwesome using in the manual compilation ------------------------------------------------------------------------ ####### Changes ####### M cfgs/AGRIF_DEMO/cpp_AGRIF_DEMO.fcm M cfgs/AGRIF_DEMO/EXPREF/1_context_nemo.xml M cfgs/AGRIF_DEMO/EXPREF/1_namelist_cfg M cfgs/AGRIF_DEMO/EXPREF/2_context_nemo.xml M cfgs/AGRIF_DEMO/EXPREF/2_namelist_cfg M cfgs/AGRIF_DEMO/EXPREF/3_context_nemo.xml M cfgs/AGRIF_DEMO/EXPREF/3_namelist_cfg D cfgs/AGRIF_DEMO/EXPREF/axis_def_nemo.xml M cfgs/AGRIF_DEMO/EXPREF/context_nemo.xml M cfgs/AGRIF_DEMO/EXPREF/namelist_cfg M cfgs/AGRIF_DEMO/EXPREF/namelist_ice_cfg A cfgs/AGRIF_DEMO/MY_SRC M cfgs/AGRIF_DEMO/README.rst D cfgs/AMM12/EXPREF/axis_def_nemo.xml M cfgs/AMM12/EXPREF/context_nemo.xml M cfgs/AMM12/EXPREF/file_def_nemo-oce.xml M cfgs/AMM12/EXPREF/namelist_cfg D cfgs/C1D_PAPA/EXPREF/axis_def_nemo.xml M cfgs/C1D_PAPA/EXPREF/context_nemo.xml M cfgs/C1D_PAPA/EXPREF/namelist_cfg D cfgs/GYRE_BFM/EXPREF/axis_def_nemo.xml M cfgs/GYRE_BFM/EXPREF/context_nemo.xml M cfgs/GYRE_BFM/EXPREF/namelist_cfg D cfgs/GYRE_PISCES/EXPREF/axis_def_nemo.xml M cfgs/GYRE_PISCES/EXPREF/context_nemo.xml M cfgs/GYRE_PISCES/EXPREF/namelist_cfg D cfgs/ORCA2_ICE_PISCES/EXPREF/axis_def_nemo.xml M cfgs/ORCA2_ICE_PISCES/EXPREF/context_nemo.xml M cfgs/ORCA2_ICE_PISCES/EXPREF/file_def_nemo-ice.xml M cfgs/ORCA2_ICE_PISCES/EXPREF/file_def_nemo-oce.xml M cfgs/ORCA2_ICE_PISCES/EXPREF/namelist_cfg M cfgs/ORCA2_ICE_PISCES/EXPREF/namelist_ice_cfg A cfgs/ORCA2_ICE_PISCES/MY_SRC D cfgs/ORCA2_OFF_PISCES/EXPREF/axis_def_nemo.xml M cfgs/ORCA2_OFF_PISCES/EXPREF/context_nemo.xml D cfgs/ORCA2_OFF_PISCES/EXPREF/file_def_nemo-pisces.xml A cfgs/ORCA2_OFF_PISCES/EXPREF/file_def_nemo.xml M cfgs/ORCA2_OFF_PISCES/EXPREF/namelist_cfg D cfgs/ORCA2_OFF_TRC/EXPREF/axis_def_nemo.xml M cfgs/ORCA2_OFF_TRC/EXPREF/context_nemo.xml D cfgs/ORCA2_OFF_TRC/EXPREF/file_def_nemo-innerttrc.xml A cfgs/ORCA2_OFF_TRC/EXPREF/file_def_nemo.xml M cfgs/ORCA2_OFF_TRC/EXPREF/namelist_cfg D cfgs/ORCA2_SAS_ICE/EXPREF/axis_def_nemo.xml M cfgs/ORCA2_SAS_ICE/EXPREF/context_nemo.xml M cfgs/ORCA2_SAS_ICE/EXPREF/namelist_cfg A cfgs/ORCA2_SAS_ICE/MY_SRC M cfgs/README.rst D cfgs/SHARED/axis_def_nemo.xml M cfgs/SHARED/domain_def_nemo.xml M cfgs/SHARED/field_def_nemo-ice.xml M cfgs/SHARED/field_def_nemo-oce.xml M cfgs/SHARED/field_def_nemo-pisces.xml M cfgs/SHARED/grid_def_nemo.xml M cfgs/SHARED/namelist_ice_ref M cfgs/SHARED/namelist_ref M cfgs/SHARED/README.rst D cfgs/SPITZ12/EXPREF/axis_def_nemo.xml M cfgs/SPITZ12/EXPREF/context_nemo.xml M cfgs/SPITZ12/EXPREF/namelist_cfg M cfgs/SPITZ12/EXPREF/namelist_ice_cfg A cfgs/SPITZ12/MY_SRC M CHANGES D CHANGES.rst M CONTRIBUTING.rst M doc/latex/global/document.tex M doc/latex/global/frontpage.tex M doc/latex/global/latexmk.pl M doc/latex/global/new_cmds.tex M doc/latex/global/packages.tex M doc/latex/global/styles.tex M doc/latex/NEMO/subfiles/apdx_triads.tex M doc/latex/NEMO/subfiles/chap_DIA.tex M doc/latex/NEMO/subfiles/chap_OBS.tex M doc/latex/NEMO/subfiles/chap_ZDF.tex M doc/latex/SI3/namelists/namdyn_adv M doc/latex/TOP/subfiles/model_description.tex M doc/manual_build.sh M doc/namelists/nambdy M doc/namelists/nambdy_dta M doc/namelists/namberg M doc/namelists/namc1d_uvd M doc/namelists/namdia M doc/namelists/nam_diadct M doc/namelists/nam_diaharm A doc/namelists/nam_diatmb M doc/namelists/namdta_dyn M doc/namelists/namdyn M doc/namelists/namdyn_adv M doc/namelists/namini M doc/namelists/nammpp M doc/namelists/namobs M doc/namelists/nampisatm M doc/namelists/nampisopt M doc/namelists/nampissbc M doc/namelists/namrun M doc/namelists/namsbc M doc/namelists/namsbc_apr M doc/namelists/namsbc_blk M doc/namelists/namsbc_flx M doc/namelists/namsbc_isf M doc/namelists/namsbc_rnf M doc/namelists/namsbc_sas M doc/namelists/namsbc_ssr M doc/namelists/namsbc_wave M doc/namelists/namtra_qsr M doc/namelists/namtrc_dta M doc/namelists/namtsd M doc/README.rst M doc/rst/Makefile M doc/rst/README.rst M doc/rst/requirements.txt D doc/rst/source/acro.rst D doc/rst/source/cfgs.bib D doc/rst/source/cfgs.rst D doc/rst/source/changes.rst D doc/rst/source/cite.rst A doc/rst/source/coarsening.rst A doc/rst/source/configurations.bib A doc/rst/source/configurations.rst M doc/rst/source/conf.py D doc/rst/source/contrib.rst A doc/rst/source/contributing.rst A doc/rst/source/coupling.rst D doc/rst/source/cplg.rst D doc/rst/source/da.rst A doc/rst/source/data_assimilation.rst A doc/rst/source/definitions.rst A doc/rst/source/diagnostics.rst D doc/rst/source/diags.rst D doc/rst/source/docutils.conf M doc/rst/source/global.rst D doc/rst/source/guide.rst A doc/rst/source/NEMO_guide.rst D doc/rst/source/ref.bib A doc/rst/source/references.bib A doc/rst/source/release_notes.rst M doc/rst/source/setup.rst D doc/rst/source/_static/AGRIF_DEMO_no_cap.jpg D doc/rst/source/_static/AMM_domain.png D doc/rst/source/_static/Papa2015.jpg M doc/rst/source/_static/style.css A doc/rst/source/test_cases.bib A doc/rst/source/test_cases.rst D doc/rst/source/tests.bib D doc/rst/source/tests.rst D doc/rst/source/todos.rst D doc/rst/source/unpub D doc/rst/source/unpub/crs.rst D doc/rst/source/unpub/doc.rst D doc/rst/source/unpub/src.rst M doc/tools/check_pkg.py M doc/tools/shr_func.sh M INSTALL.rst M README.rst M REFERENCES.bib A RELEASE_NOTES.rst M src/ICE/icedyn_adv.F90 M src/ICE/icedyn_adv_pra.F90 M src/ICE/icedyn_adv_umx.F90 M src/ICE/icedyn_rdgrft.F90 M src/ICE/iceitd.F90 M src/ICE/icevar.F90 M src/NST/agrif_user.F90 M src/OCE/ASM/README.rst M src/OCE/BDY/bdydta.F90 M src/OCE/BDY/bdyini.F90 M src/OCE/BDY/bdyvol.F90 M src/OCE/CRS/README.rst M src/OCE/DIA/diaar5.F90 M src/OCE/DIA/diahth.F90 M src/OCE/DIA/diaptr.F90 A src/OCE/DIA/diatmb.F90 M src/OCE/DIA/diawri.F90 M src/OCE/DOM/daymod.F90 M src/OCE/DYN/divhor.F90 M src/OCE/DYN/dynnxt.F90 M src/OCE/DYN/dynspg_ts.F90 M src/OCE/DYN/dynzdf.F90 M src/OCE/FLO/flodom.F90 M src/OCE/FLO/flowri.F90 M src/OCE/ICB/icbthm.F90 M src/OCE/IOM/iom.F90 M src/OCE/LDF/ldfdyn.F90 M src/OCE/LDF/ldfslp.F90 M src/OCE/LDF/ldftra.F90 M src/OCE/nemogcm.F90 M src/OCE/OBS/README.rst M src/OCE/SBC/cpl_oasis3.F90 M src/OCE/SBC/fldread.F90 M src/OCE/SBC/README.rst M src/OCE/SBC/sbcblk.F90 M src/OCE/SBC/sbccpl.F90 M src/OCE/SBC/sbcisf.F90 M src/OCE/SBC/sbcmod.F90 M src/OCE/SBC/sbc_oce.F90 M src/OCE/SBC/sbcrnf.F90 M src/OCE/SBC/sbcssr.F90 M src/OCE/step.F90 M src/OCE/TRA/eosbn2.F90 M src/OCE/TRA/traadv_cen.F90 M src/OCE/TRA/traadv.F90 M src/OCE/TRA/traadv_fct.F90 M src/OCE/TRA/traadv_mus.F90 M src/OCE/TRA/traadv_qck.F90 M src/OCE/TRA/traadv_ubs.F90 M src/OCE/TRA/trabbc.F90 M src/OCE/TRA/traldf_iso.F90 M src/OCE/TRA/traldf_lap_blp.F90 M src/OCE/TRA/traldf_triad.F90 M src/OCE/TRA/tranxt.F90 D src/OCE/USR/README.rst A src/OCE/USR/README-setup-configs M src/OFF/nemogcm.F90 D src/README.rst M src/SAS/README.rst M src/TOP/CFC/trcsms_cfc.F90 M src/TOP/PISCES/P4Z/p4zfechem.F90 M src/TOP/PISCES/P4Z/p4zflx.F90 M src/TOP/PISCES/P4Z/p4zligand.F90 M src/TOP/PISCES/P4Z/p4zlim.F90 M src/TOP/PISCES/P4Z/p4zlys.F90 M src/TOP/PISCES/P4Z/p4zmeso.F90 M src/TOP/PISCES/P4Z/p4zmicro.F90 M src/TOP/PISCES/P4Z/p4zopt.F90 M src/TOP/PISCES/P4Z/p4zprod.F90 M src/TOP/PISCES/P4Z/p4zrem.F90 M src/TOP/PISCES/P4Z/p4zsed.F90 M src/TOP/PISCES/P4Z/p4zsink.F90 M src/TOP/PISCES/P4Z/p4zsms.F90 M src/TOP/PISCES/P4Z/p5zlim.F90 M src/TOP/PISCES/P4Z/p5zmeso.F90 M src/TOP/PISCES/P4Z/p5zmicro.F90 M src/TOP/PISCES/P4Z/p5zprod.F90 M src/TOP/README.rst M src/TOP/trcbdy.F90 M src/TOP/trcini.F90 M src/TOP/trcstp.F90 M src/TOP/trcwri.F90 M src/TOP/TRP/trcnxt.F90 D tests/CANAL/EXPREF/axis_def_nemo.xml M tests/CANAL/EXPREF/context_nemo.xml M tests/CANAL/EXPREF/field_def_nemo-oce.xml M tests/CANAL/EXPREF/namelist_cfg M tests/CANAL/MY_SRC/diawri.F90 M tests/CANAL/MY_SRC/usrdef_nam.F90 D tests/ICE_ADV1D/EXPREF/axis_def_nemo.xml M tests/ICE_ADV1D/EXPREF/context_nemo.xml M tests/ICE_ADV1D/EXPREF/namelist_cfg M tests/ICE_ADV1D/EXPREF/namelist_cfg_120pts M tests/ICE_ADV1D/EXPREF/namelist_cfg_240pts M tests/ICE_ADV1D/EXPREF/namelist_cfg_60pts D tests/ICE_ADV2D/EXPREF/axis_def_nemo.xml M tests/ICE_ADV2D/EXPREF/context_nemo.xml M tests/ICE_ADV2D/EXPREF/namelist_cfg M tests/ICE_AGRIF/EXPREF/1_namelist_cfg D tests/ICE_AGRIF/EXPREF/axis_def_nemo.xml M tests/ICE_AGRIF/EXPREF/context_nemo.xml M tests/ICE_AGRIF/EXPREF/namelist_cfg D tests/ISOMIP/EXPREF/axis_def_nemo.xml M tests/ISOMIP/EXPREF/context_nemo.xml M tests/ISOMIP/EXPREF/namelist_cfg D tests/LOCK_EXCHANGE/EXPREF/axis_def_nemo.xml M tests/LOCK_EXCHANGE/EXPREF/context_nemo.xml M tests/LOCK_EXCHANGE/EXPREF/namelist_FCT2_flux_ubs_cfg D tests/OVERFLOW/EXPREF/axis_def_nemo.xml M tests/OVERFLOW/EXPREF/context_nemo.xml M tests/OVERFLOW/EXPREF/namelist_sco_FCT2_flux_cen-ahm1000_cfg M tests/OVERFLOW/EXPREF/namelist_sco_FCT2_flux_ubs_cfg M tests/OVERFLOW/EXPREF/namelist_sco_FCT4_flux_ubs_cfg M tests/OVERFLOW/EXPREF/namelist_zps_FCT2_flux_ubs_cfg M tests/OVERFLOW/EXPREF/namelist_zps_FCT4_flux_ubs_cfg M tests/OVERFLOW/EXPREF/namelist_zps_FCT4_vect_een_cfg M tests/README.rst M tests/VORTEX/cpp_VORTEX.fcm M tests/VORTEX/EXPREF/1_context_nemo.xml M tests/VORTEX/EXPREF/1_namelist_cfg D tests/VORTEX/EXPREF/axis_def_nemo.xml M tests/VORTEX/EXPREF/context_nemo.xml M tests/VORTEX/EXPREF/namelist_cfg D tests/WAD/EXPREF/axis_def_nemo.xml M tests/WAD/EXPREF/context_nemo.xml M tests/WAD/EXPREF/namelist_cfg