MODULE bio_medusa_mod !!====================================================================== !! *** MODULE bio_medusa_mod *** !! MEDUSA variables : module for MEDUSA variables which are shared !! across subroutines !!====================================================================== !! History : !! - ! 2017-04 (M. Stringer) Code taken from trcbio_medusa.F90 !!---------------------------------------------------------------------- #if defined key_medusa !!---------------------------------------------------------------------- !! 'key_medusa' MEDUSA !!---------------------------------------------------------------------- USE par_kind, ONLY: wp IMPLICIT NONE PUBLIC PUBLIC bio_medusa_alloc ! called by trcini.F90 !! AXY (01/03/10): add in mixed layer PP diagnostics REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: fprn_ml,fprd_ml !! Variable for iron-ligand system REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: xFree !! Mortality/Remineralisation REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: fregenfast,fregenfastsi # if defined key_roam REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: fregenfastc # endif !! Particle flux REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: ffastn,ffastsi,ffastfe REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: ffastc,ffastca REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: fsedn,fsedsi,fsedfe,fsedc,fsedca REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: fccd !! water column nutrient and flux integrals REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: ftot_n,ftot_si,ftot_fe REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: fflx_n,fflx_si,fflx_fe REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: fifd_n,fifd_si,fifd_fe REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: fofd_n,fofd_si,fofd_fe # if defined key_roam REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: ftot_c,ftot_a,ftot_o2 REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: fflx_c,fflx_a,fflx_o2 REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: fifd_c,fifd_a,fifd_o2 REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: fofd_c,fofd_a,fofd_o2 # endif !! Zooplankton grazing integrals REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: fzmi_i,fzmi_o,fzme_i,fzme_o !! Limitation term temporary variables REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: ftot_pn,ftot_pd REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: ftot_zmi,ftot_zme,ftot_det,ftot_dtc !! Nitrogen and silicon production and consumption REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: fnit_prod,fnit_cons REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: fsil_prod,fsil_cons REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: f_omcal,f_omarg !! Carbon, alkalinity production and consumption REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: fcomm_resp REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: fcar_prod,fcar_cons !! Oxygen production and consumption (and non-consumption) REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: foxy_prod,foxy_cons,foxy_anox !! Benthic fluxes INTEGER :: ibenthic REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: f_sbenin_n,f_sbenin_fe,f_sbenin_c REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: f_fbenin_n,f_fbenin_fe,f_fbenin_si REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: f_fbenin_c,f_fbenin_ca REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: f_benout_n,f_benout_fe,f_benout_si REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: f_benout_c,f_benout_ca !! Benthic fluxes of CaCO3 that shouldn't happen because of lysocline REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: f_benout_lyso_ca !! riverine fluxes REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: f_runoff,f_riv_n,f_riv_si REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: f_riv_c,f_riv_alk !! Jpalm -- 11-10-2015 -- adapt diag to iom_use !! 2D var for diagnostics. REAL(wp), POINTER, DIMENSION(:,:) :: fprn2d, fdpn2d, fprd2d, fdpd2d REAL(wp), POINTER, DIMENSION(:,:) :: fprds2d, fsdiss2d, fgmipn2d REAL(wp), POINTER, DIMENSION(:,:) :: fgmid2d, fdzmi2d, fgmepn2d REAL(wp), POINTER, DIMENSION(:,:) :: fgmepd2d, fgmezmi2d, fgmed2d REAL(wp), POINTER, DIMENSION(:,:) :: fdzme2d, fslown2d, fdd2d REAL(wp), POINTER, DIMENSION(:,:) :: ffetop2d, ffebot2d, ffescav2d REAL(wp), POINTER, DIMENSION(:,:) :: fjln2d, fnln2d, ffln2d, fjld2d REAL(wp), POINTER, DIMENSION(:,:) :: fnld2d, ffld2d, fsld2d2 REAL(wp), POINTER, DIMENSION(:,:) :: fsld2d, fregen2d, fregensi2d REAL(wp), POINTER, DIMENSION(:,:) :: ftempn2d, ftempsi2d, ftempfe2d REAL(wp), POINTER, DIMENSION(:,:) :: ftempc2d, ftempca2d, freminn2d REAL(wp), POINTER, DIMENSION(:,:) :: freminsi2d, freminfe2d REAL(wp), POINTER, DIMENSION(:,:) :: freminc2d, freminca2d REAL(wp), POINTER, DIMENSION(:,:) :: zw2d # if defined key_roam REAL(wp), POINTER, DIMENSION(:,:) :: ffastca2d, rivn2d, rivsi2d REAL(wp), POINTER, DIMENSION(:,:) :: rivc2d, rivalk2d, fslowc2d REAL(wp), POINTER, DIMENSION(:,:) :: fdpn22d, fdpd22d, fdzmi22d REAL(wp), POINTER, DIMENSION(:,:) :: fdzme22d, zimesn2d, zimesd2d REAL(wp), POINTER, DIMENSION(:,:) :: zimesc2d, zimesdc2d, ziexcr2d REAL(wp), POINTER, DIMENSION(:,:) :: ziresp2d, zigrow2d, zemesn2d REAL(wp), POINTER, DIMENSION(:,:) :: zemesd2d, zemesc2d, zemesdc2d REAL(wp), POINTER, DIMENSION(:,:) :: zeexcr2d, zeresp2d, zegrow2d REAL(wp), POINTER, DIMENSION(:,:) :: mdetc2d, gmidc2d, gmedc2d REAL(wp), POINTER, DIMENSION(:,:) :: f_pco2a2d, f_pco2w2d, f_co2flux2d REAL(wp), POINTER, DIMENSION(:,:) :: f_TDIC2d, f_TALK2d, f_kw6602d REAL(wp), POINTER, DIMENSION(:,:) :: f_pp02d, f_o2flux2d, f_o2sat2d REAL(wp), POINTER, DIMENSION(:,:) :: dms_andr2d, dms_simo2d, dms_aran2d REAL(wp), POINTER, DIMENSION(:,:) :: dms_hall2d, dms_surf2d REAL(wp), POINTER, DIMENSION(:,:) :: iben_n2d, iben_fe2d, iben_c2d REAL(wp), POINTER, DIMENSION(:,:) :: iben_si2d, iben_ca2d, oben_n2d REAL(wp), POINTER, DIMENSION(:,:) :: oben_fe2d, oben_c2d, oben_si2d REAL(wp), POINTER, DIMENSION(:,:) :: oben_ca2d, sfr_ocal2d REAL(wp), POINTER, DIMENSION(:,:) :: sfr_oarg2d, lyso_ca2d !! AXY (23/11/16): extra MOCSY diagnostics REAL(wp), POINTER, DIMENSION(:,:) :: f_xco2a_2d, f_fco2w_2d, f_fco2a_2d REAL(wp), POINTER, DIMENSION(:,:) :: f_ocnrhosw_2d, f_ocnschco2_2d REAL(wp), POINTER, DIMENSION(:,:) :: f_ocnkwco2_2d REAL(wp), POINTER, DIMENSION(:,:) :: f_ocnk0_2d, f_co2starair_2d REAL(wp), POINTER, DIMENSION(:,:) :: f_ocndpco2_2d # endif !! !! 3D var for diagnostics. REAL(wp), POINTER, DIMENSION(:,:,:) :: tpp3d, detflux3d, remin3dn !! # if defined key_roam !! AXY (04/11/16) !! 2D var for new CMIP6 diagnostics (behind a key_roam ifdef !! for simplicity) REAL(wp), POINTER, DIMENSION(:,:) :: fgco2,intdissic,intdissin REAL(wp), POINTER, DIMENSION(:,:) :: intdissisi,inttalk,o2min,zo2min REAL(wp), POINTER, DIMENSION(:,:) :: fbddtalk,fbddtdic,fbddtdife REAL(wp), POINTER, DIMENSION(:,:) :: fbddtdin,fbddtdisi !! !! 3D var for new CMIP6 diagnostics REAL(wp), POINTER, DIMENSION(:,:,:) :: tppd3 REAL(wp), POINTER, DIMENSION(:,:,:) :: bddtalk3,bddtdic3,bddtdife3 REAL(wp), POINTER, DIMENSION(:,:,:) :: bddtdin3, bddtdisi3 REAL(wp), POINTER, DIMENSION(:,:,:) :: fd_nit3,fd_sil3,fd_car3,fd_cal3 REAL(wp), POINTER, DIMENSION(:,:,:) :: co33,co3satarag3,co3satcalc3,dcalc3 REAL(wp), POINTER, DIMENSION(:,:,:) :: expc3,expn3 REAL(wp), POINTER, DIMENSION(:,:,:) :: fediss3,fescav3 REAL(wp), POINTER, DIMENSION(:,:,:) :: migrazp3,migrazd3,megrazp3 REAL(wp), POINTER, DIMENSION(:,:,:) :: megrazd3, megrazz3 REAL(wp), POINTER, DIMENSION(:,:,:) :: o2sat3,pbsi3,pcal3,remoc3 REAL(wp), POINTER, DIMENSION(:,:,:) :: pnlimj3,pnlimn3,pnlimfe3 REAL(wp), POINTER, DIMENSION(:,:,:) :: pdlimj3,pdlimn3,pdlimfe3,pdlimsi3 # endif !!---------------------------------------------------------------------- !! NEMO/TOP 3.3.1 , NEMO Consortium (2010) !! $Id$ !! Software governed by the CeCILL licence (NEMOGCM/NEMO_CeCILL.txt) !!---------------------------------------------------------------------- CONTAINS INTEGER FUNCTION bio_medusa_alloc() !!------------------------------------------------------------------- !! *** ROUTINE bio_medusa_alloc *** !!------------------------------------------------------------------- USE lib_mpp, ONLY: ctl_warn USE par_oce, ONLY: jpi, jpj ! USE par_trc !!------------------------------------------------------------------- ! ALLOCATE(fprn_ml(jpi,jpj),fprd_ml(jpi,jpj), & xFree(jpi,jpj), & fregenfast(jpi,jpj),fregenfastsi(jpi,jpj), & # if defined key_roam fregenfastc(jpi,jpj), & # endif ffastn(jpi,jpj),ffastsi(jpi,jpj),ffastfe(jpi,jpj), & ffastc(jpi,jpj),ffastca(jpi,jpj), & fsedn(jpi,jpj),fsedsi(jpi,jpj),fsedfe(jpi,jpj), & fsedc(jpi,jpj),fsedca(jpi,jpj), & fccd(jpi,jpj), & ftot_n(jpi,jpj),ftot_si(jpi,jpj),ftot_fe(jpi,jpj), & fflx_n(jpi,jpj),fflx_si(jpi,jpj),fflx_fe(jpi,jpj), & fifd_n(jpi,jpj),fifd_si(jpi,jpj),fifd_fe(jpi,jpj), & fofd_n(jpi,jpj),fofd_si(jpi,jpj),fofd_fe(jpi,jpj), & # if defined key_roam ftot_c(jpi,jpj),ftot_a(jpi,jpj),ftot_o2(jpi,jpj), & fflx_c(jpi,jpj),fflx_a(jpi,jpj),fflx_o2(jpi,jpj), & fifd_c(jpi,jpj),fifd_a(jpi,jpj),fifd_o2(jpi,jpj), & fofd_c(jpi,jpj),fofd_a(jpi,jpj),fofd_o2(jpi,jpj), & # endif fzmi_i(jpi,jpj),fzmi_o(jpi,jpj),fzme_i(jpi,jpj), & fzme_o(jpi,jpj), & ftot_pn(jpi,jpj),ftot_pd(jpi,jpj), & ftot_zmi(jpi,jpj),ftot_zme(jpi,jpj),ftot_det(jpi,jpj), & ftot_dtc(jpi,jpj), & fnit_prod(jpi,jpj),fnit_cons(jpi,jpj), & fsil_prod(jpi,jpj),fsil_cons(jpi,jpj), & f_omcal(jpi,jpj),f_omarg(jpi,jpj), & fcomm_resp(jpi,jpj), & fcar_prod(jpi,jpj),fcar_cons(jpi,jpj), & foxy_prod(jpi,jpj), foxy_cons(jpi,jpj), & foxy_anox(jpi,jpj), & f_sbenin_n(jpi,jpj),f_sbenin_fe(jpi,jpj), & f_sbenin_c(jpi,jpj), & f_fbenin_n(jpi,jpj),f_fbenin_fe(jpi,jpj), & f_fbenin_si(jpi,jpj), & f_fbenin_c(jpi,jpj),f_fbenin_ca(jpi,jpj), & f_benout_n(jpi,jpj),f_benout_fe(jpi,jpj), & f_benout_si(jpi,jpj), & f_benout_c(jpi,jpj),f_benout_ca(jpi,jpj), & f_benout_lyso_ca(jpi,jpj), & f_runoff(jpi,jpj),f_riv_n(jpi,jpj),f_riv_si(jpi,jpj), & f_riv_c(jpi,jpj),f_riv_alk(jpi,jpj), & STAT = bio_medusa_alloc) !! Check that allocation was successful IF ( bio_medusa_alloc /= 0 ) THEN CALL ctl_warn('bio_medusa_alloc: failed to allocate arrays') END IF END FUNCTION bio_medusa_alloc #else !!---------------------------------------------------------------------- !! Empty module : No MEDUSA !!---------------------------------------------------------------------- #endif !!====================================================================== END MODULE bio_medusa_mod