MODULE asminc !!====================================================================== !! *** MODULE asminc *** !! Assimilation increment : Apply an increment generated by data !! assimilation !!====================================================================== !! History : ! 2007-03 (M. Martin) Met Office version !! ! 2007-04 (A. Weaver) calc_date original code !! ! 2007-04 (A. Weaver) Merge with OPAVAR/NEMOVAR !! NEMO 3.3 ! 2010-05 (D. Lea) Update to work with NEMO v3.2 !! - ! 2010-05 (D. Lea) add calc_month_len routine based on day_init !! 3.4 ! 2012-10 (A. Weaver and K. Mogensen) Fix for direct initialization !!---------------------------------------------------------------------- !!---------------------------------------------------------------------- !! 'key_asminc' : Switch on the assimilation increment interface !!---------------------------------------------------------------------- !! asm_inc_init : Initialize the increment arrays and IAU weights !! calc_date : Compute the calendar date YYYYMMDD on a given step !! tra_asm_inc : Apply the tracer (T and S) increments !! dyn_asm_inc : Apply the dynamic (u and v) increments !! ssh_asm_inc : Apply the SSH increment !! seaice_asm_inc : Apply the seaice increment !! logchl_asm_inc : Apply the logchl increment !!---------------------------------------------------------------------- USE wrk_nemo ! Memory Allocation USE par_oce ! Ocean space and time domain variables USE dom_oce ! Ocean space and time domain USE domvvl ! domain: variable volume level USE oce ! Dynamics and active tracers defined in memory USE ldfdyn_oce ! ocean dynamics: lateral physics USE eosbn2 ! Equation of state - in situ and potential density USE zpshde ! Partial step : Horizontal Derivative USE iom ! Library to read input files USE asmpar ! Parameters for the assmilation interface USE c1d ! 1D initialization USE in_out_manager ! I/O manager USE lib_mpp ! MPP library #if defined key_lim2 USE ice_2 ! LIM2 #endif #if defined key_cice && defined key_asminc USE sbc_ice, ONLY : & ! CICE Ice model variables & ndaice_da, nfresh_da, nfsalt_da #endif USE sbc_oce ! Surface boundary condition variables. USE zdfmxl, ONLY : & ! & hmld_tref, & #if defined key_karaml & hmld_kara, & & ln_kara, & #endif & hmld, & & hmlp, & & hmlpt #if defined key_top USE trc, ONLY: & & trn, & & trb USE par_trc, ONLY: & & jptra #endif #if defined key_medusa && defined key_foam_medusa USE asmlogchlbal_medusa, ONLY: & & asm_logchl_bal_medusa USE par_medusa #elif defined key_hadocc USE asmlogchlbal_hadocc, ONLY: & & asm_logchl_bal_hadocc USE par_hadocc #endif IMPLICIT NONE PRIVATE PUBLIC asm_inc_init !: Initialize the increment arrays and IAU weights PUBLIC calc_date !: Compute the calendar date YYYYMMDD on a given step PUBLIC tra_asm_inc !: Apply the tracer (T and S) increments PUBLIC dyn_asm_inc !: Apply the dynamic (u and v) increments PUBLIC ssh_asm_inc !: Apply the SSH increment PUBLIC seaice_asm_inc !: Apply the seaice increment PUBLIC logchl_asm_inc !: Apply the logchl increment #if defined key_asminc LOGICAL, PUBLIC, PARAMETER :: lk_asminc = .TRUE. !: Logical switch for assimilation increment interface #else LOGICAL, PUBLIC, PARAMETER :: lk_asminc = .FALSE. !: No assimilation increments #endif LOGICAL, PUBLIC :: ln_bkgwri = .FALSE. !: No output of the background state fields LOGICAL, PUBLIC :: ln_balwri = .FALSE. !: No output of the assimilation balancing increments LOGICAL, PUBLIC :: ln_asmiau = .FALSE. !: No applying forcing with an assimilation increment LOGICAL, PUBLIC :: ln_asmdin = .FALSE. !: No direct initialization LOGICAL, PUBLIC :: ln_trainc = .FALSE. !: No tracer (T and S) assimilation increments LOGICAL, PUBLIC :: ln_dyninc = .FALSE. !: No dynamics (u and v) assimilation increments LOGICAL, PUBLIC :: ln_sshinc = .FALSE. !: No sea surface height assimilation increment LOGICAL, PUBLIC :: ln_seaiceinc !: No sea ice concentration increment LOGICAL, PUBLIC :: ln_logchlinc = .FALSE. !: No log10(chlorophyll) increment LOGICAL, PUBLIC :: ln_logchlbal = .FALSE. !: Don't apply multivariate log10(chlorophyll) balancing LOGICAL, PUBLIC :: ln_salfix = .FALSE. !: Apply minimum salinity check LOGICAL, PUBLIC :: ln_temnofreeze = .FALSE. !: Don't allow the temperature to drop below freezing INTEGER, PUBLIC :: nn_divdmp !: Apply divergence damping filter nn_divdmp times REAL(wp), PUBLIC, DIMENSION(:,:,:), ALLOCATABLE :: t_bkg , s_bkg !: Background temperature and salinity REAL(wp), PUBLIC, DIMENSION(:,:,:), ALLOCATABLE :: u_bkg , v_bkg !: Background u- & v- velocity components REAL(wp), PUBLIC, DIMENSION(:,:,:), ALLOCATABLE :: t_bkginc, s_bkginc !: Increment to the background T & S REAL(wp), PUBLIC, DIMENSION(:,:,:), ALLOCATABLE :: u_bkginc, v_bkginc !: Increment to the u- & v-components REAL(wp), PUBLIC, DIMENSION(:) , ALLOCATABLE :: wgtiau !: IAU weights for each time step #if defined key_asminc REAL(wp), PUBLIC, DIMENSION(:,:), ALLOCATABLE :: ssh_iau !: IAU-weighted sea surface height increment #endif ! !!! time steps relative to the cycle interval [0,nitend-nit000-1] INTEGER , PUBLIC :: nitbkg !: Time step of the background state used in the Jb term INTEGER , PUBLIC :: nitdin !: Time step of the background state for direct initialization INTEGER , PUBLIC :: nitiaustr !: Time step of the start of the IAU interval INTEGER , PUBLIC :: nitiaufin !: Time step of the end of the IAU interval ! INTEGER , PUBLIC :: niaufn !: Type of IAU weighing function: = 0 Constant weighting ! !: = 1 Linear hat-like, centred in middle of IAU interval REAL(wp), PUBLIC :: salfixmin !: Ensure that the salinity is larger than this value if (ln_salfix) REAL(wp), DIMENSION(:,:), ALLOCATABLE :: ssh_bkg, ssh_bkginc ! Background sea surface height and its increment REAL(wp), DIMENSION(:,:), ALLOCATABLE :: seaice_bkginc ! Increment to the background sea ice conc REAL(wp), PUBLIC, DIMENSION(:,:), ALLOCATABLE :: logchl_bkginc !: Increment to background logchl #if defined key_top REAL(wp), PUBLIC, DIMENSION(:,:,:,:), ALLOCATABLE :: logchl_balinc !: Increment to BGC variables from logchl assim #endif #if defined key_hadocc || (defined key_medusa && defined key_foam_medusa) REAL(wp), DIMENSION(:,:), ALLOCATABLE :: pgrow_avg_bkg !: Background phyto growth for logchl balancing REAL(wp), DIMENSION(:,:), ALLOCATABLE :: ploss_avg_bkg !: Background phyto loss for logchl balancing REAL(wp), DIMENSION(:,:), ALLOCATABLE :: phyt_avg_bkg !: Background phyto for logchl balancing REAL(wp), DIMENSION(:,:), ALLOCATABLE :: mld_max_bkg !: Background max MLD for logchl balancing REAL(wp), DIMENSION(:,:,:,:), ALLOCATABLE :: tracer_bkg !: Background tracer state variables #endif #if defined key_hadocc REAL(wp), DIMENSION(:,:), ALLOCATABLE :: chl_bkg !: Background surface chlorophyll REAL(wp), DIMENSION(:,:), ALLOCATABLE :: cchl_p_bkg !: Background surface carbon:chlorophyll #endif REAL(wp) :: rn_maxchlinc = -999.0 !: maximum absolute non-log chlorophyll increment from logchl assimilation !: <= 0 implies no maximum applied (switch turned off) !: > 0 implies maximum absolute chl increment capped at this value INTEGER :: mld_choice_bgc = 5 !: choice of mld criteria to use for biogeochemistry assimilation !: 1) hmld - Turbocline/mixing depth [W points] !: 2) hmlp - Density criterion (0.01 kg/m^3 change from 10m) [W points] !: 3) hmld_kara - Kara MLD [Interpolated] !: 4) hmld_tref - Temperature criterion (0.2 K change from surface) [T points] !: 5) hmlpt - Density criterion (0.01 kg/m^3 change from 10m) [T points] !! * Substitutions # include "domzgr_substitute.h90" # include "ldfdyn_substitute.h90" # include "vectopt_loop_substitute.h90" !!---------------------------------------------------------------------- !! NEMO/OPA 3.3 , NEMO Consortium (2010) !! $Id$ !! Software governed by the CeCILL licence (NEMOGCM/NEMO_CeCILL.txt) !!---------------------------------------------------------------------- CONTAINS SUBROUTINE asm_inc_init !!---------------------------------------------------------------------- !! *** ROUTINE asm_inc_init *** !! !! ** Purpose : Initialize the assimilation increment and IAU weights. !! !! ** Method : Initialize the assimilation increment and IAU weights. !! !! ** Action : !!---------------------------------------------------------------------- INTEGER :: ji, jj, jk, jt ! dummy loop indices INTEGER :: imid, inum ! local integers INTEGER :: ios ! Local integer output status for namelist read INTEGER :: iiauper ! Number of time steps in the IAU period INTEGER :: icycper ! Number of time steps in the cycle INTEGER :: iitend_date ! Date YYYYMMDD of final time step INTEGER :: iitbkg_date ! Date YYYYMMDD of background time step for Jb term INTEGER :: iitdin_date ! Date YYYYMMDD of background time step for DI INTEGER :: iitiaustr_date ! Date YYYYMMDD of IAU interval start time step INTEGER :: iitiaufin_date ! Date YYYYMMDD of IAU interval final time step ! REAL(wp) :: znorm ! Normalization factor for IAU weights REAL(wp) :: ztotwgt ! Value of time-integrated IAU weights (should be equal to one) REAL(wp) :: z_inc_dateb ! Start date of interval on which increment is valid REAL(wp) :: z_inc_datef ! End date of interval on which increment is valid REAL(wp) :: zdate_bkg ! Date in background state file for DI REAL(wp) :: zdate_inc ! Time axis in increments file ! REAL(wp), POINTER, DIMENSION(:,:) :: hdiv ! 2D workspace !! NAMELIST/nam_asminc/ ln_bkgwri, ln_balwri, & & ln_trainc, ln_dyninc, ln_sshinc, & & ln_logchlinc, ln_logchlbal, & & ln_asmdin, ln_asmiau, & & nitbkg, nitdin, nitiaustr, nitiaufin, niaufn, & & ln_salfix, salfixmin, nn_divdmp, & & ln_seaiceinc, ln_temnofreeze, & & mld_choice_bgc, rn_maxchlinc !!---------------------------------------------------------------------- !----------------------------------------------------------------------- ! Read Namelist nam_asminc : assimilation increment interface !----------------------------------------------------------------------- ln_seaiceinc = .FALSE. ln_temnofreeze = .FALSE. REWIND( numnam_ref ) ! Namelist nam_asminc in reference namelist : Assimilation increment READ ( numnam_ref, nam_asminc, IOSTAT = ios, ERR = 901) 901 IF( ios /= 0 ) CALL ctl_nam ( ios , 'nam_asminc in reference namelist', lwp ) REWIND( numnam_cfg ) ! Namelist nam_asminc in configuration namelist : Assimilation increment READ ( numnam_cfg, nam_asminc, IOSTAT = ios, ERR = 902 ) 902 IF( ios /= 0 ) CALL ctl_nam ( ios , 'nam_asminc in configuration namelist', lwp ) IF(lwm) WRITE ( numond, nam_asminc ) ! Control print IF(lwp) THEN WRITE(numout,*) WRITE(numout,*) 'asm_inc_init : Assimilation increment initialization :' WRITE(numout,*) '~~~~~~~~~~~~' WRITE(numout,*) ' Namelist namasm : set assimilation increment parameters' WRITE(numout,*) ' Logical switch for writing out background state ln_bkgwri = ', ln_bkgwri WRITE(numout,*) ' Logical switch for writing out balancing increments ln_balwri = ', ln_balwri WRITE(numout,*) ' Logical switch for applying tracer increments ln_trainc = ', ln_trainc WRITE(numout,*) ' Logical switch for applying velocity increments ln_dyninc = ', ln_dyninc WRITE(numout,*) ' Logical switch for applying SSH increments ln_sshinc = ', ln_sshinc WRITE(numout,*) ' Logical switch for Direct Initialization (DI) ln_asmdin = ', ln_asmdin WRITE(numout,*) ' Logical switch for applying sea ice increments ln_seaiceinc = ', ln_seaiceinc WRITE(numout,*) ' Logical switch for applying logchl increments ln_logchlinc = ', ln_logchlinc WRITE(numout,*) ' Logical switch for logchl multivariate balancing ln_logchlbal = ', ln_logchlbal WRITE(numout,*) ' Logical switch for Incremental Analysis Updating (IAU) ln_asmiau = ', ln_asmiau WRITE(numout,*) ' Timestep of background in [0,nitend-nit000-1] nitbkg = ', nitbkg WRITE(numout,*) ' Timestep of background for DI in [0,nitend-nit000-1] nitdin = ', nitdin WRITE(numout,*) ' Timestep of start of IAU interval in [0,nitend-nit000-1] nitiaustr = ', nitiaustr WRITE(numout,*) ' Timestep of end of IAU interval in [0,nitend-nit000-1] nitiaufin = ', nitiaufin WRITE(numout,*) ' Type of IAU weighting function niaufn = ', niaufn WRITE(numout,*) ' Logical switch for ensuring that the sa > salfixmin ln_salfix = ', ln_salfix WRITE(numout,*) ' Minimum salinity after applying the increments salfixmin = ', salfixmin WRITE(numout,*) ' Choice of MLD for BGC assimilation mld_choice_bgc = ', mld_choice_bgc WRITE(numout,*) ' Maximum absolute chlorophyll increment (<=0 = off) rn_maxchlinc = ', rn_maxchlinc ENDIF nitbkg_r = nitbkg + nit000 - 1 ! Background time referenced to nit000 nitdin_r = nitdin + nit000 - 1 ! Background time for DI referenced to nit000 nitiaustr_r = nitiaustr + nit000 - 1 ! Start of IAU interval referenced to nit000 nitiaufin_r = nitiaufin + nit000 - 1 ! End of IAU interval referenced to nit000 iiauper = nitiaufin_r - nitiaustr_r + 1 ! IAU interval length icycper = nitend - nit000 + 1 ! Cycle interval length CALL calc_date( nit000, nitend , ndate0, iitend_date ) ! Date of final time step CALL calc_date( nit000, nitbkg_r , ndate0, iitbkg_date ) ! Background time for Jb referenced to ndate0 CALL calc_date( nit000, nitdin_r , ndate0, iitdin_date ) ! Background time for DI referenced to ndate0 CALL calc_date( nit000, nitiaustr_r, ndate0, iitiaustr_date ) ! IAU start time referenced to ndate0 CALL calc_date( nit000, nitiaufin_r, ndate0, iitiaufin_date ) ! IAU end time referenced to ndate0 ! IF(lwp) THEN WRITE(numout,*) WRITE(numout,*) ' Time steps referenced to current cycle:' WRITE(numout,*) ' iitrst = ', nit000 - 1 WRITE(numout,*) ' nit000 = ', nit000 WRITE(numout,*) ' nitend = ', nitend WRITE(numout,*) ' nitbkg_r = ', nitbkg_r WRITE(numout,*) ' nitdin_r = ', nitdin_r WRITE(numout,*) ' nitiaustr_r = ', nitiaustr_r WRITE(numout,*) ' nitiaufin_r = ', nitiaufin_r WRITE(numout,*) WRITE(numout,*) ' Dates referenced to current cycle:' WRITE(numout,*) ' ndastp = ', ndastp WRITE(numout,*) ' ndate0 = ', ndate0 WRITE(numout,*) ' iitend_date = ', iitend_date WRITE(numout,*) ' iitbkg_date = ', iitbkg_date WRITE(numout,*) ' iitdin_date = ', iitdin_date WRITE(numout,*) ' iitiaustr_date = ', iitiaustr_date WRITE(numout,*) ' iitiaufin_date = ', iitiaufin_date ENDIF IF ( nacc /= 0 ) & & CALL ctl_stop( ' nacc /= 0 and key_asminc :', & & ' Assimilation increments have only been implemented', & & ' for synchronous time stepping' ) IF ( ( ln_asmdin ).AND.( ln_asmiau ) ) & & CALL ctl_stop( ' ln_asmdin and ln_asmiau :', & & ' Choose Direct Initialization OR Incremental Analysis Updating') IF ( ( ( .NOT. ln_asmdin ).AND.( .NOT. ln_asmiau ) ) & & .AND.( ( ln_trainc ).OR.( ln_dyninc ).OR.( ln_sshinc ).OR.( ln_seaiceinc ).OR. & & ( ln_logchlinc ) )) & & CALL ctl_stop( ' One or more of ln_trainc, ln_dyninc, ln_sshinc, ln_seaiceinc,', & & ' and ln_logchlinc is set to .true.', & & ' but ln_asmdin and ln_asmiau are both set to .false. :', & & ' Inconsistent options') IF ( ( niaufn /= 0 ).AND.( niaufn /= 1 ) ) & & CALL ctl_stop( ' niaufn /= 0 or niaufn /=1 :', & & ' Type IAU weighting function is invalid') IF ( ( .NOT. ln_trainc ).AND.( .NOT. ln_dyninc ).AND.( .NOT. ln_sshinc ).AND.( .NOT. ln_seaiceinc ) & & .AND.( .NOT. ln_logchlinc ) ) & & CALL ctl_warn( ' ln_trainc, ln_dyninc, ln_sshinc, ln_seaiceinc,', & & ' and ln_logchlinc are set to .false. :', & & ' The assimilation increments are not applied') IF ( ( ln_asmiau ).AND.( nitiaustr == nitiaufin ) ) & & CALL ctl_stop( ' nitiaustr = nitiaufin :', & & ' IAU interval is of zero length') IF ( ( ln_asmiau ).AND.( ( nitiaustr_r < nit000 ).OR.( nitiaufin_r > nitend ) ) ) & & CALL ctl_stop( ' nitiaustr or nitiaufin :', & & ' IAU starting or final time step is outside the cycle interval', & & ' Valid range nit000 to nitend') IF ( ( nitbkg_r < nit000 - 1 ).OR.( nitbkg_r > nitend ) ) & & CALL ctl_stop( ' nitbkg :', & & ' Background time step is outside the cycle interval') IF ( ( nitdin_r < nit000 - 1 ).OR.( nitdin_r > nitend ) ) & & CALL ctl_stop( ' nitdin :', & & ' Background time step for Direct Initialization is outside', & & ' the cycle interval') IF ( ( ln_balwri ).AND.( .NOT. ( ln_logchlinc ) ) ) THEN CALL ctl_warn( ' Balancing increments are only calculated for logchl', & & ' Not assimilating logchl, so ln_balwri will be set to .false.') ln_balwri = .FALSE. ENDIF IF ( ( ln_logchlbal ).AND.( .NOT. ( ln_logchlinc ) ) ) THEN CALL ctl_warn( ' Cannot calculate logchl balancing increments if not assimilating logchl', & & ' Not assimilating logchl, so ln_logchlbal will be set to .false.') ln_logchlbal = .FALSE. ENDIF IF ( nstop > 0 ) RETURN ! if there are any errors then go no further !-------------------------------------------------------------------- ! Initialize the Incremental Analysis Updating weighting function !-------------------------------------------------------------------- IF ( ln_asmiau ) THEN ALLOCATE( wgtiau( icycper ) ) wgtiau(:) = 0.0 IF ( niaufn == 0 ) THEN !--------------------------------------------------------- ! Constant IAU forcing !--------------------------------------------------------- DO jt = 1, iiauper wgtiau(jt+nitiaustr-1) = 1.0 / REAL( iiauper ) END DO ELSEIF ( niaufn == 1 ) THEN !--------------------------------------------------------- ! Linear hat-like, centred in middle of IAU interval !--------------------------------------------------------- ! Compute the normalization factor znorm = 0.0 IF ( MOD( iiauper, 2 ) == 0 ) THEN ! Even number of time steps in IAU interval imid = iiauper / 2 DO jt = 1, imid znorm = znorm + REAL( jt ) END DO znorm = 2.0 * znorm ELSE ! Odd number of time steps in IAU interval imid = ( iiauper + 1 ) / 2 DO jt = 1, imid - 1 znorm = znorm + REAL( jt ) END DO znorm = 2.0 * znorm + REAL( imid ) ENDIF znorm = 1.0 / znorm DO jt = 1, imid - 1 wgtiau(jt+nitiaustr-1) = REAL( jt ) * znorm END DO DO jt = imid, iiauper wgtiau(jt+nitiaustr-1) = REAL( iiauper - jt + 1 ) * znorm END DO ENDIF ! Test that the integral of the weights over the weighting interval equals 1 IF(lwp) THEN WRITE(numout,*) WRITE(numout,*) 'asm_inc_init : IAU weights' WRITE(numout,*) '~~~~~~~~~~~~' WRITE(numout,*) ' time step IAU weight' WRITE(numout,*) ' ========= =====================' ztotwgt = 0.0 DO jt = 1, icycper ztotwgt = ztotwgt + wgtiau(jt) WRITE(numout,*) ' ', jt, ' ', wgtiau(jt) END DO WRITE(numout,*) ' ===================================' WRITE(numout,*) ' Time-integrated weight = ', ztotwgt WRITE(numout,*) ' ===================================' ENDIF ENDIF !-------------------------------------------------------------------- ! Allocate and initialize the increment arrays !-------------------------------------------------------------------- ALLOCATE( t_bkginc(jpi,jpj,jpk) ) ALLOCATE( s_bkginc(jpi,jpj,jpk) ) ALLOCATE( u_bkginc(jpi,jpj,jpk) ) ALLOCATE( v_bkginc(jpi,jpj,jpk) ) ALLOCATE( ssh_bkginc(jpi,jpj) ) ALLOCATE( seaice_bkginc(jpi,jpj)) #if defined key_asminc ALLOCATE( ssh_iau(jpi,jpj) ) #endif t_bkginc(:,:,:) = 0.0 s_bkginc(:,:,:) = 0.0 u_bkginc(:,:,:) = 0.0 v_bkginc(:,:,:) = 0.0 ssh_bkginc(:,:) = 0.0 seaice_bkginc(:,:) = 0.0 #if defined key_asminc ssh_iau(:,:) = 0.0 #endif IF ( ln_logchlinc ) THEN ALLOCATE( logchl_bkginc(jpi,jpj) ) logchl_bkginc(:,:) = 0.0 #if defined key_top ALLOCATE( logchl_balinc(jpi,jpj,jpk,jptra) ) logchl_balinc(:,:,:,:) = 0.0 #endif ENDIF IF ( ( ln_trainc ).OR.( ln_dyninc ).OR.( ln_sshinc ).OR.( ln_seaiceinc ) & & .OR.( ln_logchlinc ) ) THEN !-------------------------------------------------------------------- ! Read the increments from file !-------------------------------------------------------------------- CALL iom_open( c_asminc, inum ) CALL iom_get( inum, 'time', zdate_inc ) CALL iom_get( inum, 'z_inc_dateb', z_inc_dateb ) CALL iom_get( inum, 'z_inc_datef', z_inc_datef ) z_inc_dateb = zdate_inc z_inc_datef = zdate_inc IF(lwp) THEN WRITE(numout,*) WRITE(numout,*) 'asm_inc_init : Assimilation increments valid ', & & ' between dates ', NINT( z_inc_dateb ),' and ', & & NINT( z_inc_datef ) WRITE(numout,*) '~~~~~~~~~~~~' ENDIF IF ( ( NINT( z_inc_dateb ) < ndastp ) & & .OR.( NINT( z_inc_datef ) > iitend_date ) ) & & CALL ctl_warn( ' Validity time of assimilation increments is ', & & ' outside the assimilation interval' ) IF ( ( ln_asmdin ).AND.( NINT( zdate_inc ) /= iitdin_date ) ) & & CALL ctl_warn( ' Validity time of assimilation increments does ', & & ' not agree with Direct Initialization time' ) IF ( ln_trainc ) THEN CALL iom_get( inum, jpdom_autoglo, 'bckint', t_bkginc, 1 ) CALL iom_get( inum, jpdom_autoglo, 'bckins', s_bkginc, 1 ) ! Apply the masks t_bkginc(:,:,:) = t_bkginc(:,:,:) * tmask(:,:,:) s_bkginc(:,:,:) = s_bkginc(:,:,:) * tmask(:,:,:) ! Set missing increments to 0.0 rather than 1e+20 ! to allow for differences in masks WHERE( ABS( t_bkginc(:,:,:) ) > 1.0e+10 ) t_bkginc(:,:,:) = 0.0 WHERE( ABS( s_bkginc(:,:,:) ) > 1.0e+10 ) s_bkginc(:,:,:) = 0.0 ENDIF IF ( ln_dyninc ) THEN CALL iom_get( inum, jpdom_autoglo, 'bckinu', u_bkginc, 1 ) CALL iom_get( inum, jpdom_autoglo, 'bckinv', v_bkginc, 1 ) ! Apply the masks u_bkginc(:,:,:) = u_bkginc(:,:,:) * umask(:,:,:) v_bkginc(:,:,:) = v_bkginc(:,:,:) * vmask(:,:,:) ! Set missing increments to 0.0 rather than 1e+20 ! to allow for differences in masks WHERE( ABS( u_bkginc(:,:,:) ) > 1.0e+10 ) u_bkginc(:,:,:) = 0.0 WHERE( ABS( v_bkginc(:,:,:) ) > 1.0e+10 ) v_bkginc(:,:,:) = 0.0 ENDIF IF ( ln_sshinc ) THEN CALL iom_get( inum, jpdom_autoglo, 'bckineta', ssh_bkginc, 1 ) ! Apply the masks ssh_bkginc(:,:) = ssh_bkginc(:,:) * tmask(:,:,1) ! Set missing increments to 0.0 rather than 1e+20 ! to allow for differences in masks WHERE( ABS( ssh_bkginc(:,:) ) > 1.0e+10 ) ssh_bkginc(:,:) = 0.0 ENDIF IF ( ln_seaiceinc ) THEN CALL iom_get( inum, jpdom_autoglo, 'bckinseaice', seaice_bkginc, 1 ) ! Apply the masks seaice_bkginc(:,:) = seaice_bkginc(:,:) * tmask(:,:,1) ! Set missing increments to 0.0 rather than 1e+20 ! to allow for differences in masks WHERE( ABS( seaice_bkginc(:,:) ) > 1.0e+10 ) seaice_bkginc(:,:) = 0.0 ENDIF IF ( ln_logchlinc ) THEN CALL iom_get( inum, jpdom_autoglo, 'bckinlogchl', logchl_bkginc(:,:), 1 ) ! Apply the masks logchl_bkginc(:,:) = logchl_bkginc(:,:) * tmask(:,:,1) ! Set missing increments to 0.0 rather than 1e+20 ! to allow for differences in masks WHERE( ABS( logchl_bkginc(:,:) ) > 1.0e+10 ) logchl_bkginc(:,:) = 0.0 ENDIF CALL iom_close( inum ) ENDIF !----------------------------------------------------------------------- ! Apply divergence damping filter !----------------------------------------------------------------------- IF ( ln_dyninc .AND. nn_divdmp > 0 ) THEN CALL wrk_alloc(jpi,jpj,hdiv) DO jt = 1, nn_divdmp DO jk = 1, jpkm1 hdiv(:,:) = 0._wp DO jj = 2, jpjm1 DO ji = fs_2, fs_jpim1 ! vector opt. hdiv(ji,jj) = & ( e2u(ji ,jj ) * fse3u(ji ,jj ,jk) * u_bkginc(ji ,jj ,jk) & - e2u(ji-1,jj ) * fse3u(ji-1,jj ,jk) * u_bkginc(ji-1,jj ,jk) & + e1v(ji ,jj ) * fse3v(ji ,jj ,jk) * v_bkginc(ji ,jj ,jk) & - e1v(ji ,jj-1) * fse3v(ji ,jj-1,jk) * v_bkginc(ji ,jj-1,jk) ) & / ( e1t(ji,jj) * e2t(ji,jj) * fse3t(ji,jj,jk) ) END DO END DO CALL lbc_lnk( hdiv, 'T', 1. ) ! lateral boundary cond. (no sign change) DO jj = 2, jpjm1 DO ji = fs_2, fs_jpim1 ! vector opt. u_bkginc(ji,jj,jk) = u_bkginc(ji,jj,jk) + 0.2_wp * ( e1t(ji+1,jj)*e2t(ji+1,jj) * hdiv(ji+1,jj) & - e1t(ji ,jj)*e2t(ji ,jj) * hdiv(ji ,jj) ) & / e1u(ji,jj) * umask(ji,jj,jk) v_bkginc(ji,jj,jk) = v_bkginc(ji,jj,jk) + 0.2_wp * ( e1t(ji,jj+1)*e2t(ji,jj+1) * hdiv(ji,jj+1) & - e1t(ji,jj )*e2t(ji,jj ) * hdiv(ji,jj ) ) & / e2v(ji,jj) * vmask(ji,jj,jk) END DO END DO END DO END DO CALL wrk_dealloc(jpi,jpj,hdiv) ENDIF !----------------------------------------------------------------------- ! Allocate and initialize the background state arrays !----------------------------------------------------------------------- IF ( ln_asmdin ) THEN ALLOCATE( t_bkg(jpi,jpj,jpk) ) ALLOCATE( s_bkg(jpi,jpj,jpk) ) ALLOCATE( u_bkg(jpi,jpj,jpk) ) ALLOCATE( v_bkg(jpi,jpj,jpk) ) ALLOCATE( ssh_bkg(jpi,jpj) ) t_bkg(:,:,:) = 0.0 s_bkg(:,:,:) = 0.0 u_bkg(:,:,:) = 0.0 v_bkg(:,:,:) = 0.0 ssh_bkg(:,:) = 0.0 !-------------------------------------------------------------------- ! Read from file the background state at analysis time !-------------------------------------------------------------------- CALL iom_open( c_asmdin, inum ) CALL iom_get( inum, 'rdastp', zdate_bkg ) IF(lwp) THEN WRITE(numout,*) WRITE(numout,*) 'asm_inc_init : Assimilation background state valid at : ', & & NINT( zdate_bkg ) WRITE(numout,*) '~~~~~~~~~~~~' ENDIF IF ( NINT( zdate_bkg ) /= iitdin_date ) & & CALL ctl_warn( ' Validity time of assimilation background state does', & & ' not agree with Direct Initialization time' ) IF ( ln_trainc ) THEN CALL iom_get( inum, jpdom_autoglo, 'tn', t_bkg ) CALL iom_get( inum, jpdom_autoglo, 'sn', s_bkg ) t_bkg(:,:,:) = t_bkg(:,:,:) * tmask(:,:,:) s_bkg(:,:,:) = s_bkg(:,:,:) * tmask(:,:,:) ENDIF IF ( ln_dyninc ) THEN CALL iom_get( inum, jpdom_autoglo, 'un', u_bkg ) CALL iom_get( inum, jpdom_autoglo, 'vn', v_bkg ) u_bkg(:,:,:) = u_bkg(:,:,:) * umask(:,:,:) v_bkg(:,:,:) = v_bkg(:,:,:) * vmask(:,:,:) ENDIF IF ( ln_sshinc ) THEN CALL iom_get( inum, jpdom_autoglo, 'sshn', ssh_bkg ) ssh_bkg(:,:) = ssh_bkg(:,:) * tmask(:,:,1) ENDIF CALL iom_close( inum ) ENDIF #if defined key_hadocc || (defined key_medusa && defined key_foam_medusa) IF ( ln_logchlinc ) THEN ALLOCATE( pgrow_avg_bkg(jpi,jpj) ) ALLOCATE( ploss_avg_bkg(jpi,jpj) ) ALLOCATE( phyt_avg_bkg(jpi,jpj) ) ALLOCATE( mld_max_bkg(jpi,jpj) ) ALLOCATE( tracer_bkg(jpi,jpj,jpk,jptra) ) pgrow_avg_bkg(:,:) = 0.0 ploss_avg_bkg(:,:) = 0.0 phyt_avg_bkg(:,:) = 0.0 mld_max_bkg(:,:) = 0.0 tracer_bkg(:,:,:,:) = 0.0 #if defined key_hadocc ALLOCATE( chl_bkg(jpi,jpj) ) ALLOCATE( cchl_p_bkg(jpi,jpj) ) chl_bkg(:,:) = 0.0 cchl_p_bkg(:,:) = 0.0 #endif !-------------------------------------------------------------------- ! Read background variables for logchl assimilation ! Some only required if performing balancing !-------------------------------------------------------------------- CALL iom_open( c_asmbkg, inum ) #if defined key_hadocc CALL iom_get( inum, jpdom_autoglo, 'hadocc_chl', chl_bkg ) CALL iom_get( inum, jpdom_autoglo, 'hadocc_cchl', cchl_p_bkg ) chl_bkg(:,:) = chl_bkg(:,:) * tmask(:,:,1) cchl_p_bkg(:,:) = cchl_p_bkg(:,:) * tmask(:,:,1) #elif defined key_medusa CALL iom_get( inum, jpdom_autoglo, 'medusa_chn', tracer_bkg(:,:,:,jpchn) ) CALL iom_get( inum, jpdom_autoglo, 'medusa_chd', tracer_bkg(:,:,:,jpchd) ) #endif IF ( ln_logchlbal ) THEN CALL iom_get( inum, jpdom_autoglo, 'pgrow_avg', pgrow_avg_bkg ) CALL iom_get( inum, jpdom_autoglo, 'ploss_avg', ploss_avg_bkg ) CALL iom_get( inum, jpdom_autoglo, 'phyt_avg', phyt_avg_bkg ) CALL iom_get( inum, jpdom_autoglo, 'mld_max', mld_max_bkg ) pgrow_avg_bkg(:,:) = pgrow_avg_bkg(:,:) * tmask(:,:,1) ploss_avg_bkg(:,:) = ploss_avg_bkg(:,:) * tmask(:,:,1) phyt_avg_bkg(:,:) = phyt_avg_bkg(:,:) * tmask(:,:,1) mld_max_bkg(:,:) = mld_max_bkg(:,:) * tmask(:,:,1) #if defined key_hadocc CALL iom_get( inum, jpdom_autoglo, 'hadocc_nut', tracer_bkg(:,:,:,jp_had_nut) ) CALL iom_get( inum, jpdom_autoglo, 'hadocc_phy', tracer_bkg(:,:,:,jp_had_phy) ) CALL iom_get( inum, jpdom_autoglo, 'hadocc_zoo', tracer_bkg(:,:,:,jp_had_zoo) ) CALL iom_get( inum, jpdom_autoglo, 'hadocc_pdn', tracer_bkg(:,:,:,jp_had_pdn) ) CALL iom_get( inum, jpdom_autoglo, 'hadocc_dic', tracer_bkg(:,:,:,jp_had_dic) ) CALL iom_get( inum, jpdom_autoglo, 'hadocc_alk', tracer_bkg(:,:,:,jp_had_alk) ) #elif defined key_medusa CALL iom_get( inum, jpdom_autoglo, 'medusa_phn', tracer_bkg(:,:,:,jpphn) ) CALL iom_get( inum, jpdom_autoglo, 'medusa_phd', tracer_bkg(:,:,:,jpphd) ) CALL iom_get( inum, jpdom_autoglo, 'medusa_pds', tracer_bkg(:,:,:,jppds) ) CALL iom_get( inum, jpdom_autoglo, 'medusa_zmi', tracer_bkg(:,:,:,jpzmi) ) CALL iom_get( inum, jpdom_autoglo, 'medusa_zme', tracer_bkg(:,:,:,jpzme) ) CALL iom_get( inum, jpdom_autoglo, 'medusa_din', tracer_bkg(:,:,:,jpdin) ) CALL iom_get( inum, jpdom_autoglo, 'medusa_sil', tracer_bkg(:,:,:,jpsil) ) CALL iom_get( inum, jpdom_autoglo, 'medusa_fer', tracer_bkg(:,:,:,jpfer) ) CALL iom_get( inum, jpdom_autoglo, 'medusa_det', tracer_bkg(:,:,:,jpdet) ) CALL iom_get( inum, jpdom_autoglo, 'medusa_dtc', tracer_bkg(:,:,:,jpdtc) ) CALL iom_get( inum, jpdom_autoglo, 'medusa_dic', tracer_bkg(:,:,:,jpdic) ) CALL iom_get( inum, jpdom_autoglo, 'medusa_alk', tracer_bkg(:,:,:,jpalk) ) CALL iom_get( inum, jpdom_autoglo, 'medusa_oxy', tracer_bkg(:,:,:,jpoxy) ) #endif ENDIF CALL iom_close( inum ) DO jt = 1, jptra tracer_bkg(:,:,:,jt) = tracer_bkg(:,:,:,jt) * tmask(:,:,:) END DO ENDIF #endif ! END SUBROUTINE asm_inc_init SUBROUTINE calc_date( kit000, kt, kdate0, kdate ) !!---------------------------------------------------------------------- !! *** ROUTINE calc_date *** !! !! ** Purpose : Compute the calendar date YYYYMMDD at a given time step. !! !! ** Method : Compute the calendar date YYYYMMDD at a given time step. !! !! ** Action : !!---------------------------------------------------------------------- INTEGER, INTENT(IN) :: kit000 ! Initial time step INTEGER, INTENT(IN) :: kt ! Current time step referenced to kit000 INTEGER, INTENT(IN) :: kdate0 ! Initial date INTEGER, INTENT(OUT) :: kdate ! Current date reference to kdate0 ! INTEGER :: iyea0 ! Initial year INTEGER :: imon0 ! Initial month INTEGER :: iday0 ! Initial day INTEGER :: iyea ! Current year INTEGER :: imon ! Current month INTEGER :: iday ! Current day INTEGER :: idaystp ! Number of days between initial and current date INTEGER :: idaycnt ! Day counter INTEGER, DIMENSION(12) :: imonth_len !: length in days of the months of the current year !----------------------------------------------------------------------- ! Compute the calendar date YYYYMMDD !----------------------------------------------------------------------- ! Initial date iyea0 = kdate0 / 10000 imon0 = ( kdate0 - ( iyea0 * 10000 ) ) / 100 iday0 = kdate0 - ( iyea0 * 10000 ) - ( imon0 * 100 ) ! Check that kt >= kit000 - 1 IF ( kt < kit000 - 1 ) CALL ctl_stop( ' kt must be >= kit000 - 1') ! If kt = kit000 - 1 then set the date to the restart date IF ( kt == kit000 - 1 ) THEN kdate = ndastp RETURN ENDIF ! Compute the number of days from the initial date idaystp = INT( REAL( kt - kit000 ) * rdt / 86400. ) iday = iday0 imon = imon0 iyea = iyea0 idaycnt = 0 CALL calc_month_len( iyea, imonth_len ) DO WHILE ( idaycnt < idaystp ) iday = iday + 1 IF ( iday > imonth_len(imon) ) THEN iday = 1 imon = imon + 1 ENDIF IF ( imon > 12 ) THEN imon = 1 iyea = iyea + 1 CALL calc_month_len( iyea, imonth_len ) ! update month lengths ENDIF idaycnt = idaycnt + 1 END DO ! kdate = iyea * 10000 + imon * 100 + iday ! END SUBROUTINE SUBROUTINE calc_month_len( iyear, imonth_len ) !!---------------------------------------------------------------------- !! *** ROUTINE calc_month_len *** !! !! ** Purpose : Compute the number of days in a months given a year. !! !! ** Method : !!---------------------------------------------------------------------- INTEGER, DIMENSION(12) :: imonth_len !: length in days of the months of the current year INTEGER :: iyear !: year !!---------------------------------------------------------------------- ! ! length of the month of the current year (from nleapy, read in namelist) IF ( nleapy < 2 ) THEN imonth_len(:) = (/ 31, 28, 31, 30, 31, 30, 31, 31, 30, 31, 30, 31 /) IF ( nleapy == 1 ) THEN ! we are using calendar with leap years IF ( MOD(iyear, 4) == 0 .AND. ( MOD(iyear, 400) == 0 .OR. MOD(iyear, 100) /= 0 ) ) THEN imonth_len(2) = 29 ENDIF ENDIF ELSE imonth_len(:) = nleapy ! all months with nleapy days per year ENDIF ! END SUBROUTINE SUBROUTINE tra_asm_inc( kt ) !!---------------------------------------------------------------------- !! *** ROUTINE tra_asm_inc *** !! !! ** Purpose : Apply the tracer (T and S) assimilation increments !! !! ** Method : Direct initialization or Incremental Analysis Updating !! !! ** Action : !!---------------------------------------------------------------------- INTEGER, INTENT(IN) :: kt ! Current time step ! INTEGER :: ji,jj,jk INTEGER :: it REAL(wp) :: zincwgt ! IAU weight for current time step REAL (wp), DIMENSION(jpi,jpj,jpk) :: fzptnz ! 3d freezing point values !!---------------------------------------------------------------------- ! freezing point calculation taken from oc_fz_pt (but calculated for all depths) ! used to prevent the applied increments taking the temperature below the local freezing point DO jk = 1, jpkm1 CALL eos_fzp( tsn(:,:,jk,jp_sal), fzptnz(:,:,jk), fsdept(:,:,jk) ) END DO IF ( ln_asmiau ) THEN !-------------------------------------------------------------------- ! Incremental Analysis Updating !-------------------------------------------------------------------- IF ( ( kt >= nitiaustr_r ).AND.( kt <= nitiaufin_r ) ) THEN it = kt - nit000 + 1 zincwgt = wgtiau(it) / rdt ! IAU weight for the current time step IF(lwp) THEN WRITE(numout,*) WRITE(numout,*) 'tra_asm_inc : Tracer IAU at time step = ', kt,' with IAU weight = ', wgtiau(it) WRITE(numout,*) '~~~~~~~~~~~~' ENDIF ! Update the tracer tendencies DO jk = 1, jpkm1 IF (ln_temnofreeze) THEN ! Do not apply negative increments if the temperature will fall below freezing WHERE(t_bkginc(:,:,jk) > 0.0_wp .OR. & & tsn(:,:,jk,jp_tem) + tsa(:,:,jk,jp_tem) + t_bkginc(:,:,jk) * wgtiau(it) > fzptnz(:,:,jk) ) tsa(:,:,jk,jp_tem) = tsa(:,:,jk,jp_tem) + t_bkginc(:,:,jk) * zincwgt END WHERE ELSE tsa(:,:,jk,jp_tem) = tsa(:,:,jk,jp_tem) + t_bkginc(:,:,jk) * zincwgt ENDIF IF (ln_salfix) THEN ! Do not apply negative increments if the salinity will fall below a specified ! minimum value salfixmin WHERE(s_bkginc(:,:,jk) > 0.0_wp .OR. & & tsn(:,:,jk,jp_sal) + tsa(:,:,jk,jp_sal) + s_bkginc(:,:,jk) * wgtiau(it) > salfixmin ) tsa(:,:,jk,jp_sal) = tsa(:,:,jk,jp_sal) + s_bkginc(:,:,jk) * zincwgt END WHERE ELSE tsa(:,:,jk,jp_sal) = tsa(:,:,jk,jp_sal) + s_bkginc(:,:,jk) * zincwgt ENDIF END DO ENDIF IF ( kt == nitiaufin_r + 1 ) THEN ! For bias crcn to work DEALLOCATE( t_bkginc ) DEALLOCATE( s_bkginc ) ENDIF ELSEIF ( ln_asmdin ) THEN !-------------------------------------------------------------------- ! Direct Initialization !-------------------------------------------------------------------- IF ( kt == nitdin_r ) THEN neuler = 0 ! Force Euler forward step ! Initialize the now fields with the background + increment IF (ln_temnofreeze) THEN ! Do not apply negative increments if the temperature will fall below freezing WHERE( t_bkginc(:,:,:) > 0.0_wp .OR. tsn(:,:,:,jp_tem) + t_bkginc(:,:,:) > fzptnz(:,:,:) ) tsn(:,:,:,jp_tem) = t_bkg(:,:,:) + t_bkginc(:,:,:) END WHERE ELSE tsn(:,:,:,jp_tem) = t_bkg(:,:,:) + t_bkginc(:,:,:) ENDIF IF (ln_salfix) THEN ! Do not apply negative increments if the salinity will fall below a specified ! minimum value salfixmin WHERE( s_bkginc(:,:,:) > 0.0_wp .OR. tsn(:,:,:,jp_sal) + s_bkginc(:,:,:) > salfixmin ) tsn(:,:,:,jp_sal) = s_bkg(:,:,:) + s_bkginc(:,:,:) END WHERE ELSE tsn(:,:,:,jp_sal) = s_bkg(:,:,:) + s_bkginc(:,:,:) ENDIF tsb(:,:,:,:) = tsn(:,:,:,:) ! Update before fields CALL eos( tsb, rhd, rhop, gdept_0(:,:,:) ) ! Before potential and in situ densities !!gm fabien ! CALL eos( tsb, rhd, rhop ) ! Before potential and in situ densities !!gm IF( ln_zps .AND. .NOT. lk_c1d .AND. .NOT. ln_isfcav) & & CALL zps_hde ( kt, jpts, tsb, gtsu, gtsv, & ! Partial steps: before horizontal gradient & rhd, gru , grv ) ! of t, s, rd at the last ocean level IF( ln_zps .AND. .NOT. lk_c1d .AND. ln_isfcav) & & CALL zps_hde_isf( nit000, jpts, tsb, gtsu, gtsv, & ! Partial steps for top cell (ISF) & rhd, gru , grv , aru , arv , gzu , gzv , ge3ru , ge3rv , & & gtui, gtvi, grui, grvi, arui, arvi, gzui, gzvi, ge3rui, ge3rvi ) ! of t, s, rd at the last ocean level #if defined key_zdfkpp CALL eos( tsn, rhd, fsdept_n(:,:,:) ) ! Compute rhd !!gm fabien CALL eos( tsn, rhd ) ! Compute rhd #endif DEALLOCATE( t_bkginc ) DEALLOCATE( s_bkginc ) DEALLOCATE( t_bkg ) DEALLOCATE( s_bkg ) ENDIF ! ENDIF ! Perhaps the following call should be in step IF ( ln_seaiceinc ) CALL seaice_asm_inc ( kt ) ! apply sea ice concentration increment ! END SUBROUTINE tra_asm_inc SUBROUTINE dyn_asm_inc( kt ) !!---------------------------------------------------------------------- !! *** ROUTINE dyn_asm_inc *** !! !! ** Purpose : Apply the dynamics (u and v) assimilation increments. !! !! ** Method : Direct initialization or Incremental Analysis Updating. !! !! ** Action : !!---------------------------------------------------------------------- INTEGER, INTENT(IN) :: kt ! Current time step ! INTEGER :: jk INTEGER :: it REAL(wp) :: zincwgt ! IAU weight for current time step !!---------------------------------------------------------------------- IF ( ln_asmiau ) THEN !-------------------------------------------------------------------- ! Incremental Analysis Updating !-------------------------------------------------------------------- IF ( ( kt >= nitiaustr_r ).AND.( kt <= nitiaufin_r ) ) THEN it = kt - nit000 + 1 zincwgt = wgtiau(it) / rdt ! IAU weight for the current time step IF(lwp) THEN WRITE(numout,*) WRITE(numout,*) 'dyn_asm_inc : Dynamics IAU at time step = ', & & kt,' with IAU weight = ', wgtiau(it) WRITE(numout,*) '~~~~~~~~~~~~' ENDIF ! Update the dynamic tendencies DO jk = 1, jpkm1 ua(:,:,jk) = ua(:,:,jk) + u_bkginc(:,:,jk) * zincwgt va(:,:,jk) = va(:,:,jk) + v_bkginc(:,:,jk) * zincwgt END DO IF ( kt == nitiaufin_r ) THEN DEALLOCATE( u_bkginc ) DEALLOCATE( v_bkginc ) ENDIF ENDIF ELSEIF ( ln_asmdin ) THEN !-------------------------------------------------------------------- ! Direct Initialization !-------------------------------------------------------------------- IF ( kt == nitdin_r ) THEN neuler = 0 ! Force Euler forward step ! Initialize the now fields with the background + increment un(:,:,:) = u_bkg(:,:,:) + u_bkginc(:,:,:) vn(:,:,:) = v_bkg(:,:,:) + v_bkginc(:,:,:) ub(:,:,:) = un(:,:,:) ! Update before fields vb(:,:,:) = vn(:,:,:) DEALLOCATE( u_bkg ) DEALLOCATE( v_bkg ) DEALLOCATE( u_bkginc ) DEALLOCATE( v_bkginc ) ENDIF ! ENDIF ! END SUBROUTINE dyn_asm_inc SUBROUTINE ssh_asm_inc( kt ) !!---------------------------------------------------------------------- !! *** ROUTINE ssh_asm_inc *** !! !! ** Purpose : Apply the sea surface height assimilation increment. !! !! ** Method : Direct initialization or Incremental Analysis Updating. !! !! ** Action : !!---------------------------------------------------------------------- INTEGER, INTENT(IN) :: kt ! Current time step ! INTEGER :: it INTEGER :: jk REAL(wp) :: zincwgt ! IAU weight for current time step !!---------------------------------------------------------------------- IF ( ln_asmiau ) THEN !-------------------------------------------------------------------- ! Incremental Analysis Updating !-------------------------------------------------------------------- IF ( ( kt >= nitiaustr_r ).AND.( kt <= nitiaufin_r ) ) THEN it = kt - nit000 + 1 zincwgt = wgtiau(it) / rdt ! IAU weight for the current time step IF(lwp) THEN WRITE(numout,*) WRITE(numout,*) 'ssh_asm_inc : SSH IAU at time step = ', & & kt,' with IAU weight = ', wgtiau(it) WRITE(numout,*) '~~~~~~~~~~~~' ENDIF ! Save the tendency associated with the IAU weighted SSH increment ! (applied in dynspg.*) #if defined key_asminc ssh_iau(:,:) = ssh_bkginc(:,:) * zincwgt #endif IF ( kt == nitiaufin_r ) THEN DEALLOCATE( ssh_bkginc ) ENDIF ELSE #if defined key_asminc ssh_iau(:,:) = 0.0 #endif ENDIF ELSEIF ( ln_asmdin ) THEN !-------------------------------------------------------------------- ! Direct Initialization !-------------------------------------------------------------------- IF ( kt == nitdin_r ) THEN neuler = 0 ! Force Euler forward step ! Initialize the now fields the background + increment sshn(:,:) = ssh_bkg(:,:) + ssh_bkginc(:,:) ! Update before fields sshb(:,:) = sshn(:,:) IF( lk_vvl ) THEN DO jk = 1, jpk fse3t_b(:,:,jk) = fse3t_n(:,:,jk) END DO ENDIF DEALLOCATE( ssh_bkg ) DEALLOCATE( ssh_bkginc ) ENDIF ! ENDIF ! END SUBROUTINE ssh_asm_inc SUBROUTINE seaice_asm_inc( kt, kindic ) !!---------------------------------------------------------------------- !! *** ROUTINE seaice_asm_inc *** !! !! ** Purpose : Apply the sea ice assimilation increment. !! !! ** Method : Direct initialization or Incremental Analysis Updating. !! !! ** Action : !! !!---------------------------------------------------------------------- IMPLICIT NONE ! INTEGER, INTENT(in) :: kt ! Current time step INTEGER, INTENT(in), OPTIONAL :: kindic ! flag for disabling the deallocation ! INTEGER :: it REAL(wp) :: zincwgt ! IAU weight for current time step #if defined key_lim2 REAL(wp), DIMENSION(jpi,jpj) :: zofrld, zohicif, zseaicendg, zhicifinc ! LIM REAL(wp) :: zhicifmin = 0.5_wp ! ice minimum depth in metres #endif !!---------------------------------------------------------------------- IF ( ln_asmiau ) THEN !-------------------------------------------------------------------- ! Incremental Analysis Updating !-------------------------------------------------------------------- IF ( ( kt >= nitiaustr_r ).AND.( kt <= nitiaufin_r ) ) THEN it = kt - nit000 + 1 zincwgt = wgtiau(it) ! IAU weight for the current time step ! note this is not a tendency so should not be divided by rdt (as with the tracer and other increments) IF(lwp) THEN WRITE(numout,*) WRITE(numout,*) 'seaice_asm_inc : sea ice conc IAU at time step = ', & & kt,' with IAU weight = ', wgtiau(it) WRITE(numout,*) '~~~~~~~~~~~~' ENDIF ! Sea-ice : LIM-3 case (to add) #if defined key_lim2 ! Sea-ice : LIM-2 case zofrld (:,:) = frld(:,:) zohicif(:,:) = hicif(:,:) ! frld = MIN( MAX( frld (:,:) - seaice_bkginc(:,:) * zincwgt, 0.0_wp), 1.0_wp) pfrld = MIN( MAX( pfrld(:,:) - seaice_bkginc(:,:) * zincwgt, 0.0_wp), 1.0_wp) fr_i(:,:) = 1.0_wp - frld(:,:) ! adjust ice fraction ! zseaicendg(:,:) = zofrld(:,:) - frld(:,:) ! find out actual sea ice nudge applied ! ! Nudge sea ice depth to bring it up to a required minimum depth WHERE( zseaicendg(:,:) > 0.0_wp .AND. hicif(:,:) < zhicifmin ) zhicifinc(:,:) = (zhicifmin - hicif(:,:)) * zincwgt ELSEWHERE zhicifinc(:,:) = 0.0_wp END WHERE ! ! nudge ice depth hicif (:,:) = hicif (:,:) + zhicifinc(:,:) phicif(:,:) = phicif(:,:) + zhicifinc(:,:) ! ! seaice salinity balancing (to add) #endif #if defined key_cice && defined key_asminc ! Sea-ice : CICE case. Pass ice increment tendency into CICE ndaice_da(:,:) = seaice_bkginc(:,:) * zincwgt / rdt #endif IF ( kt == nitiaufin_r ) THEN DEALLOCATE( seaice_bkginc ) ENDIF ELSE #if defined key_cice && defined key_asminc ! Sea-ice : CICE case. Zero ice increment tendency into CICE ndaice_da(:,:) = 0.0_wp #endif ENDIF ELSEIF ( ln_asmdin ) THEN !-------------------------------------------------------------------- ! Direct Initialization !-------------------------------------------------------------------- IF ( kt == nitdin_r ) THEN neuler = 0 ! Force Euler forward step ! Sea-ice : LIM-3 case (to add) #if defined key_lim2 ! Sea-ice : LIM-2 case. zofrld(:,:)=frld(:,:) zohicif(:,:)=hicif(:,:) ! ! Initialize the now fields the background + increment frld (:,:) = MIN( MAX( frld(:,:) - seaice_bkginc(:,:), 0.0_wp), 1.0_wp) pfrld(:,:) = frld(:,:) fr_i (:,:) = 1.0_wp - frld(:,:) ! adjust ice fraction zseaicendg(:,:) = zofrld(:,:) - frld(:,:) ! find out actual sea ice nudge applied ! ! Nudge sea ice depth to bring it up to a required minimum depth WHERE( zseaicendg(:,:) > 0.0_wp .AND. hicif(:,:) < zhicifmin ) zhicifinc(:,:) = (zhicifmin - hicif(:,:)) * zincwgt ELSEWHERE zhicifinc(:,:) = 0.0_wp END WHERE ! ! nudge ice depth hicif (:,:) = hicif (:,:) + zhicifinc(:,:) phicif(:,:) = phicif(:,:) ! ! seaice salinity balancing (to add) #endif #if defined key_cice && defined key_asminc ! Sea-ice : CICE case. Pass ice increment tendency into CICE ndaice_da(:,:) = seaice_bkginc(:,:) / rdt #endif IF ( .NOT. PRESENT(kindic) ) THEN DEALLOCATE( seaice_bkginc ) END IF ELSE #if defined key_cice && defined key_asminc ! Sea-ice : CICE case. Zero ice increment tendency into CICE ndaice_da(:,:) = 0.0_wp #endif ENDIF !#if defined defined key_lim2 || defined key_cice ! ! IF (ln_seaicebal ) THEN ! !! balancing salinity increments ! !! simple case from limflx.F90 (doesn't include a mass flux) ! !! assumption is that as ice concentration is reduced or increased ! !! the snow and ice depths remain constant ! !! note that snow is being created where ice concentration is being increased ! !! - could be more sophisticated and ! !! not do this (but would need to alter h_snow) ! ! usave(:,:,:)=sb(:,:,:) ! use array as a temporary store ! ! DO jj = 1, jpj ! DO ji = 1, jpi ! ! calculate change in ice and snow mass per unit area ! ! positive values imply adding salt to the ocean (results from ice formation) ! ! fwf : ice formation and melting ! ! zfons = ( -nfresh_da(ji,jj)*soce + nfsalt_da(ji,jj) )*rdt ! ! ! change salinity down to mixed layer depth ! mld=hmld_kara(ji,jj) ! ! ! prevent small mld ! ! less than 10m can cause salinity instability ! IF (mld < 10) mld=10 ! ! ! set to bottom of a level ! DO jk = jpk-1, 2, -1 ! IF ((mld > gdepw(ji,jj,jk)) .and. (mld < gdepw(ji,jj,jk+1))) THEN ! mld=gdepw(ji,jj,jk+1) ! jkmax=jk ! ENDIF ! ENDDO ! ! ! avoid applying salinity balancing in shallow water or on land ! ! ! ! ! dsal_ocn (psu kg m^-2) / (kg m^-3 * m) ! ! dsal_ocn=0.0_wp ! sal_thresh=5.0_wp ! minimum salinity threshold for salinity balancing ! ! if (tmask(ji,jj,1) > 0 .AND. tmask(ji,jj,jkmax) > 0 ) & ! dsal_ocn = zfons / (rhop(ji,jj,1) * mld) ! ! ! put increments in for levels in the mixed layer ! ! but prevent salinity below a threshold value ! ! DO jk = 1, jkmax ! ! IF (dsal_ocn > 0.0_wp .or. sb(ji,jj,jk)+dsal_ocn > sal_thresh) THEN ! sb(ji,jj,jk) = sb(ji,jj,jk) + dsal_ocn ! sn(ji,jj,jk) = sn(ji,jj,jk) + dsal_ocn ! ENDIF ! ! ENDDO ! ! ! ! salt exchanges at the ice/ocean interface ! ! zpmess = zfons / rdt_ice ! rdt_ice is ice timestep ! ! ! !! Adjust fsalt. A +ve fsalt means adding salt to ocean ! !! fsalt(ji,jj) = fsalt(ji,jj) + zpmess ! adjust fsalt ! !! ! !! emps(ji,jj) = emps(ji,jj) + zpmess ! or adjust emps (see icestp1d) ! !! ! E-P (kg m-2 s-2) ! ! emp(ji,jj) = emp(ji,jj) + zpmess ! E-P (kg m-2 s-2) ! ENDDO !ji ! ENDDO !jj! ! ! ENDIF !ln_seaicebal ! !#endif ENDIF END SUBROUTINE seaice_asm_inc SUBROUTINE logchl_asm_inc( kt ) !!---------------------------------------------------------------------- !! *** ROUTINE logchl_asm_inc *** !! !! ** Purpose : Apply the chlorophyll assimilation increments. !! !! ** Method : Calculate increments to state variables using nitrogen !! balancing. !! Direct initialization or Incremental Analysis Updating. !! !! ** Action : !!---------------------------------------------------------------------- INTEGER, INTENT(IN) :: kt ! Current time step ! INTEGER :: jk ! Loop counter INTEGER :: it ! Index REAL(wp) :: zincwgt ! IAU weight for current time step REAL(wp) :: zincper ! IAU interval in seconds !!---------------------------------------------------------------------- IF ( kt <= nit000 ) THEN zincper = (nitiaufin_r - nitiaustr_r + 1) * rdt #if defined key_medusa && defined key_foam_medusa CALL asm_logchl_bal_medusa( logchl_bkginc, zincper, mld_choice_bgc, & & rn_maxchlinc, ln_logchlbal, & & pgrow_avg_bkg, ploss_avg_bkg, & & phyt_avg_bkg, mld_max_bkg, & & tracer_bkg, logchl_balinc ) #elif defined key_hadocc CALL asm_logchl_bal_hadocc( logchl_bkginc, zincper, mld_choice_bgc, & & rn_maxchlinc, ln_logchlbal, & & pgrow_avg_bkg, ploss_avg_bkg, & & phyt_avg_bkg, mld_max_bkg, & & chl_bkg, cchl_p_bkg, & & tracer_bkg, logchl_balinc ) #else CALL ctl_stop( 'Attempting to assimilate logchl, ', & & 'but not defined a biogeochemical model' ) #endif ENDIF IF ( ln_asmiau ) THEN !-------------------------------------------------------------------- ! Incremental Analysis Updating !-------------------------------------------------------------------- IF ( ( kt >= nitiaustr_r ).AND.( kt <= nitiaufin_r ) ) THEN it = kt - nit000 + 1 zincwgt = wgtiau(it) ! IAU weight for the current time step ! note this is not a tendency so should not be divided by rdt IF(lwp) THEN WRITE(numout,*) WRITE(numout,*) 'logchl_asm_inc : logchl IAU at time step = ', & & kt,' with IAU weight = ', wgtiau(it) WRITE(numout,*) '~~~~~~~~~~~~' ENDIF ! Update the biogeochemical variables ! Add directly to trn and trb, rather than to tra, as not a tendency #if defined key_medusa && defined key_foam_medusa DO jk = 1, jpkm1 trn(:,:,jk,jp_msa0:jp_msa1) = trn(:,:,jk,jp_msa0:jp_msa1) + & & logchl_balinc(:,:,jk,jp_msa0:jp_msa1) * zincwgt trb(:,:,jk,jp_msa0:jp_msa1) = trb(:,:,jk,jp_msa0:jp_msa1) + & & logchl_balinc(:,:,jk,jp_msa0:jp_msa1) * zincwgt END DO #elif defined key_hadocc DO jk = 1, jpkm1 trn(:,:,jk,jp_had0:jp_had1) = trn(:,:,jk,jp_had0:jp_had1) + & & logchl_balinc(:,:,jk,jp_had0:jp_had1) * zincwgt trb(:,:,jk,jp_had0:jp_had1) = trb(:,:,jk,jp_had0:jp_had1) + & & logchl_balinc(:,:,jk,jp_had0:jp_had1) * zincwgt END DO #endif ! Do not deallocate arrays - needed by asm_bal_wri ! which is called at end of model run ENDIF ELSEIF ( ln_asmdin ) THEN !-------------------------------------------------------------------- ! Direct Initialization !-------------------------------------------------------------------- IF ( kt == nitdin_r ) THEN neuler = 0 ! Force Euler forward step #if defined key_medusa && defined key_foam_medusa ! Initialize the now fields with the background + increment ! Background currently is what the model is initialised with CALL ctl_warn( ' Doing direct initialisation of MEDUSA with chlorophyll assimilation', & & ' Background state is taken from model rather than background file' ) trn(:,:,:,jp_msa0:jp_msa1) = trn(:,:,:,jp_msa0:jp_msa1) + & & logchl_balinc(:,:,:,jp_msa0:jp_msa1) trb(:,:,:,jp_msa0:jp_msa1) = trn(:,:,:,jp_msa0:jp_msa1) #elif defined key_hadocc ! Initialize the now fields with the background + increment ! Background currently is what the model is initialised with CALL ctl_warn( ' Doing direct initialisation of HadOCC with chlorophyll assimilation', & & ' Background state is taken from model rather than background file' ) trn(:,:,:,jp_had0:jp_had1) = trn(:,:,:,jp_had0:jp_had1) + & & logchl_balinc(:,:,:,jp_had0:jp_had1) trb(:,:,:,jp_had0:jp_had1) = trn(:,:,:,jp_had0:jp_had1) #endif ! Do not deallocate arrays - needed by asm_bal_wri ! which is called at end of model run ENDIF ! ENDIF ! END SUBROUTINE logchl_asm_inc !!====================================================================== END MODULE asminc