MODULE sms_medusa !!---------------------------------------------------------------------- !! *** sms_medusa.F90 *** !! TOP : MEDUSA Source Minus Sink variables !!---------------------------------------------------------------------- !! History : - ! 1999-09 (M. Levy) original code !! - ! 2000-12 (O. Aumont, E. Kestenare) add sediment !! 1.0 ! 2005-10 (C. Ethe) F90 !! 1.0 ! 2005-03 (A-S Kremeur) add fphylab, fzoolab, fdetlab, fdbod !! - ! 2005-06 (A-S Kremeur) add sedpocb, sedpocn, sedpoca !! 2.0 ! 2007-04 (C. Deltel, G. Madec) Free form and modules !! - ! 2008-08 (K. Popova) adaptation for MEDUSA !! - ! 2008-11 (A. Yool) continuing adaptation for MEDUSA !! - ! 2010-03 (A. Yool) updated for branch inclusion !! - ! 2011-04 (A. Yool) updated for ROAM project !!---------------------------------------------------------------------- #if defined key_medusa !!---------------------------------------------------------------------- !! 'key_medusa' MEDUSA model !!---------------------------------------------------------------------- USE par_oce USE par_trc IMPLICIT NONE PUBLIC !!---------------------------------------------------------------------- !! NEMO/TOP 1.0 , LOCEAN-IPSL (2005) !! $Id$ !! Software governed by the CeCILL licence (modipsl/doc/NEMO_CeCILL.txt) !!---------------------------------------------------------------------- INTEGER :: numnatp_ref = -1 !! Logical units for namelist medusa INTEGER :: numnatp_cfg = -1 !! Logical units for namelist medusa INTEGER :: numonp = -1 !! Logical unit for namelist medusa output !!---------------------------------------------------------------------- !! Biological parameters !!---------------------------------------------------------------------- !! !! Primary production and chl related quantities REAL(wp) :: xxi !: conversion factor from gC to mmolN REAL(wp) :: xaln !: Chl-a specific initial slope of P-I curve for non-diatoms REAL(wp) :: xald !: Chl-a specific initial slope of P-I curve for diatoms INTEGER :: jphy !: phytoplankton T-dependent growth switch REAL(wp) :: xvpn !: maximum growth rate for non-diatoms REAL(wp) :: xvpd !: maximum growth rate for diatoms REAL(wp) :: xthetam !: maximum Chl to C ratio for non-diatoms REAL(wp) :: xthetamd !: maximum Chl to C ratio for diatoms REAL(wp) :: jq10 !: specific Q10 value (jphy==2) !! !! Diatom silicon parameters REAL(wp) :: xsin0 !: minimum diatom Si:N ratio REAL(wp) :: xnsi0 !: minimum diatom N:Si ratio REAL(wp) :: xuif !: hypothetical growth ratio at infinite Si:N ratio !! !! Nutrient limitation INTEGER :: jliebig !: Liebig nutrient uptake switch REAL(wp) :: xnln !: half-sat constant for DIN uptake by non-diatoms REAL(wp) :: xnld !: half-sat constant for DIN uptake by diatoms REAL(wp) :: xsld !: half-sat constant for Si uptake by diatoms REAL(wp) :: xfln !: half-sat constant for Fe uptake by non-diatoms REAL(wp) :: xfld !: half-sat constant for Fe uptake by diatoms !! !! Grazing REAL(wp) :: xgmi !: microzoo maximum growth rate REAL(wp) :: xgme !: mesozoo maximum growth rate REAL(wp) :: xkmi !: microzoo grazing half-sat parameter REAL(wp) :: xkme !: mesozoo grazing half-sat parameter REAL(wp) :: xphi !: micro/mesozoo grazing inefficiency REAL(wp) :: xbetan !: micro/mesozoo N assimilation efficiency REAL(wp) :: xbetac !: micro/mesozoo C assimilation efficiency REAL(wp) :: xkc !: micro/mesozoo net C growth efficiency REAL(wp) :: xpmipn !: grazing preference of microzoo for non-diatoms REAL(wp) :: xpmid !: grazing preference of microzoo for diatoms REAL(wp) :: xpmepn !: grazing preference of mesozoo for non-diatoms REAL(wp) :: xpmepd !: grazing preference of mesozoo for diatoms REAL(wp) :: xpmezmi !: grazing preference of mesozoo for microzoo REAL(wp) :: xpmed !: grazing preference of mesozoo for detritus !! !! Metabolic losses REAL(wp) :: xmetapn !: non-diatom metabolic loss rate REAL(wp) :: xmetapd !: diatom metabolic loss rate REAL(wp) :: xmetazmi !: microzoo metabolic loss rate REAL(wp) :: xmetazme !: mesozoo metabolic loss rate !! !! Mortality losses INTEGER :: jmpn !: non-diatom mortality functional form REAL(wp) :: xmpn !: non-diatom mortality rate REAL(wp) :: xkphn !: non-diatom mortality half-sat constant INTEGER :: jmpd !: diatom mortality functional form REAL(wp) :: xmpd !: diatom mortality rate REAL(wp) :: xkphd !: diatom mortality half-sat constant INTEGER :: jmzmi !: microzoo mortality functional form REAL(wp) :: xmzmi !: microzoo mortality rate REAL(wp) :: xkzmi !: microzoo mortality half-sat constant INTEGER :: jmzme !: mesozoo mortality functional form REAL(wp) :: xmzme !: mesozoo mortality rate REAL(wp) :: xkzme !: mesozoo mortality half-sat constant !! !! Remineralisation INTEGER :: jmd !: detritus T-dependent remineralisation switch INTEGER :: jsfd !: accelerate seafloor detritus remin. switch REAL(wp) :: xmd !: detrital nitrogen remineralisation rate REAL(wp) :: xmdc !: detrital carbon remineralisation rate !! !! Stochiometric ratios REAL(wp) :: xthetapn !: non-diatom C:N ratio REAL(wp) :: xthetapd !: diatom C:N ratio REAL(wp) :: xthetazmi !: microzoo C:N ratio REAL(wp) :: xthetazme !: mesozoo C:N ratio REAL(wp) :: xthetad !: detritus C:N ratio REAL(wp) :: xrfn !: phytoplankton Fe:N ratio REAL(wp) :: xrsn !: diatom Si:N ratio (NOT USED HERE; RETAINED FOR LOBSTER) !! !! Iron parameters INTEGER :: jiron !: iron scavenging submodel switch REAL(wp) :: xfe_mass !: iron atomic mass REAL(wp) :: xfe_sol !: aeolian iron solubility REAL(wp) :: xfe_sed !: sediment iron input REAL(wp) :: xLgT !: total ligand concentration (umol/m3) REAL(wp) :: xk_FeL !: dissociation constant for (Fe + L) REAL(wp) :: xk_sc_Fe !: scavenging rate of "free" iron !! !! Gravitational sinking REAL(wp) :: vsed !: detritus gravitational sinking rate REAL(wp) :: xhr !: coefficient for Martin et al. (1987) remineralisation !! !! Fast-sinking detritus parameters INTEGER :: jexport !: fast detritus remineralisation switch INTEGER :: jfdfate !: fate of fast detritus at seafloor switch INTEGER :: jrratio !: rain ratio switch INTEGER :: jocalccd !: CCD switch REAL(wp) :: xridg_r0 !: Ridgwell rain ratio coefficient REAL(wp) :: xfdfrac1 !: fast-sinking fraction of diatom nat. mort. losses REAL(wp) :: xfdfrac2 !: fast-sinking fraction of mesozooplankton mort. losses REAL(wp) :: xfdfrac3 !: fast-sinking fraction of diatom silicon grazing losses REAL(wp) :: xcaco3a !: polar (high latitude) CaCO3 fraction REAL(wp) :: xcaco3b !: equatorial (low latitude) CaCO3 fraction REAL(wp) :: xmassc !: organic C mass:mole ratio, C106 H175 O40 N16 P1 REAL(wp) :: xmassca !: calcium carbonate mass:mole ratio, CaCO3 REAL(wp) :: xmasssi !: biogenic silicon mass:mole ratio, (H2SiO3)n REAL(wp) :: xprotca !: calcium carbonate protection ratio REAL(wp) :: xprotsi !: biogenic silicon protection ratio REAL(wp) :: xfastc !: organic C remineralisation length scale REAL(wp) :: xfastca !: calcium carbonate dissolution length scale REAL(wp) :: xfastsi !: biogenic silicon dissolution length scale !! !! Benthos parameters INTEGER :: jorgben !: does organic detritus go to the benthos? INTEGER :: jinorgben !: does inorganic detritus go to the benthos? !! REAL(wp) :: xsedn !: organic nitrogen sediment remineralisation rate REAL(wp) :: xsedfe !: organic iron sediment remineralisation rate REAL(wp) :: xsedsi !: inorganic silicon sediment dissolution rate REAL(wp) :: xsedc !: organic carbon sediment remineralisation rate REAL(wp) :: xsedca !: inorganic carbon sediment dissolution rate REAL(wp) :: xburial !: burial rate of seafloor detritus !! !! River parameters INTEGER :: jriver_n !: riverine nitrogen? 0 = no, 1 = conc, 2 = flux INTEGER :: jriver_si !: riverine silicon? 0 = no, 1 = conc, 2 = flux INTEGER :: jriver_c !: riverine carbon? 0 = no, 1 = conc, 2 = flux INTEGER :: jriver_alk!: riverine alkalinity? 0 = no, 1 = conc, 2 = flux INTEGER :: jriver_dep!: depth river input added to? 1 = surface, >1 possible !! !! Miscellaneous REAL(wp) :: xsdiss !: diatom frustule dissolution rate !! !! Additional parameters INTEGER :: jpkb !: vertical layer for diagnostic of the vertical flux !! !! UKESM diagnostics INTEGER :: jdms !: include DMS diagnostics ? Jpalm (27-08-2014) INTEGER :: jdms_input !: use instant (0) or diel-average (1) inputs (AXY, 08/07/2015) INTEGER :: jdms_model !: choice of DMS model passed to atmosphere !! 1 = ANDR, 2 = SIMO, 3 = ARAN, 4 = HALL !! !! REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:) :: remdmp !: depth dependent damping coefficient of passive tracers !! !! AXY (27/07/10): add in indices for depth horizons (for sinking flux !! and seafloor iron inputs) INTEGER :: i0100, i0150, i0200, i0500, i1000, i1100 #if defined key_roam !! !! ROAM carbon, alkalinity and oxygen cycle parameters REAL(wp) :: xthetaphy !: oxygen evolution/consumption by phytoplankton REAL(wp) :: xthetazoo !: oxygen consumption by zooplankton REAL(wp) :: xthetanit !: oxygen consumption by nitrogen remineralisation REAL(wp) :: xthetarem !: oxygen consumption by carbon remineralisation REAL(wp) :: xo2min !: oxygen minimum concentration !! !! 3D fields of carbonate system parameters REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: f3_pH !: 3D pH REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: f3_h2co3 !: 3D carbonic acid REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: f3_hco3 !: 3D bicarbonate REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: f3_co3 !: 3D carbonate REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: f3_omcal !: 3D omega calcite REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: f3_omarg !: 3D omega aragonite !! !! 2D fields of calcium carbonate compensation depth REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:) :: f2_ccd_cal !: 2D calcite CCD depth REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:) :: f2_ccd_arg !: 2D aragonite CCD depth !! #if defined key_foam_medusa !! 2D fields of pCO2 and fCO2 for observation operator REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:) :: f2_pco2w !: 2D pCO2 REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:) :: f2_fco2w !: 2D fCO2 !! #endif !! 2D fields of organic and inorganic material sedimented on the seafloor REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:) :: zb_sed_n !: 2D organic nitrogen (before) REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:) :: zn_sed_n !: 2D organic nitrogen (now) REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:) :: za_sed_n !: 2D organic nitrogen (after) REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:) :: zb_sed_fe !: 2D organic iron (before) REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:) :: zn_sed_fe !: 2D organic iron (now) REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:) :: za_sed_fe !: 2D organic iron (after) REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:) :: zb_sed_si !: 2D inorganic silicon (before) REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:) :: zn_sed_si !: 2D inorganic silicon (now) REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:) :: za_sed_si !: 2D inorganic silicon (after) REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:) :: zb_sed_c !: 2D organic carbon (before) REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:) :: zn_sed_c !: 2D organic carbon (now) REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:) :: za_sed_c !: 2D organic carbon (after) REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:) :: zb_sed_ca !: 2D inorganic carbon (before) REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:) :: zn_sed_ca !: 2D inorganic carbon (now) REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:) :: za_sed_ca !: 2D inorganic carbon (after) !! !! 2D fields of temporally averaged properties for DMS calculations (AXY, 07/07/15) REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:) :: zb_dms_chn !: 2D avg CHN (before) REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:) :: zn_dms_chn !: 2D avg CHN (now) REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:) :: za_dms_chn !: 2D avg CHN (after) REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:) :: zb_dms_chd !: 2D avg CHD (before) REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:) :: zn_dms_chd !: 2D avg CHD (now) REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:) :: za_dms_chd !: 2D avg CHD (after) REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:) :: zb_dms_mld !: 2D avg MLD (before) REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:) :: zn_dms_mld !: 2D avg MLD (now) REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:) :: za_dms_mld !: 2D avg MLD (after) REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:) :: zb_dms_qsr !: 2D avg QSR (before) REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:) :: zn_dms_qsr !: 2D avg QSR (now) REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:) :: za_dms_qsr !: 2D avg QSR (after) REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:) :: zb_dms_din !: 2D avg DIN (before) REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:) :: zn_dms_din !: 2D avg DIN (now) REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:) :: za_dms_din !: 2D avg DIN (after) !! !! 2D fields needing to be knows at first tstp for coupling with atm - UKEMS(Jpalm,14-06-2016) REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:) :: zb_co2_flx !: 2D avg fx co2 (before) REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:) :: zn_co2_flx !: 2D avg fx co2 (now) REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:) :: za_co2_flx !: 2D avg fx co2 (after) REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:) :: zb_dms_srf !: 2D avg sfr dms (before) REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:) :: zn_dms_srf !: 2D avg sfr dms (now) REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:) :: za_dms_srf !: 2D avg srf dms (after) REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:) :: zn_chl_srf !: 2D avg srf chl (now) #endif !!---------------------------------------------------------------------- !! CCD parameter !!---------------------------------------------------------------------- !! REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:) :: ocal_ccd !: CCD depth !!---------------------------------------------------------------------- !! Dust parameters !!---------------------------------------------------------------------- !! REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:) :: dust !: dust parameter 1 REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:) :: zirondep !! Fe deposition !!---------------------------------------------------------------------- !! River parameters !!---------------------------------------------------------------------- !! REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:) :: riv_n !: riverine N REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:) :: riv_si !: riverine Si REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:) :: riv_c !: riverine C REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:) :: riv_alk !: riverine alkalinity !! AXY (19/07/12): add this to permit river fluxes to be added below top box REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:) :: friver_dep !: where river fluxes added #if defined key_roam !!---------------------------------------------------------------------- !! Atmospheric pCO2 data (1859 to 2100 inclusive) !!---------------------------------------------------------------------- !! REAL(wp), DIMENSION(242) :: hist_pco2 !: pCO2 # if defined key_rcp26 !! UKMO, run AJKKH + KAAEC, RCP 2.6, pCO2 time evolution DATA hist_pco2 / 286.0230, 286.1730, 286.3230, 286.4480, 286.5730, & & 286.7230, 286.8480, 286.9480, 287.0480, 287.1730, & & 287.3230, 287.4730, 287.6480, 287.8480, 288.0730, & & 288.3480, 288.6480, 288.9730, 289.3470, 289.7470, & & 290.1730, 290.6470, 291.1470, 291.6220, 292.0720, & & 292.5220, 292.9220, 293.2470, 293.5220, 293.7470, & & 293.9470, 294.1220, 294.2720, 294.4220, 294.5470, & & 294.6470, 294.7470, 294.8470, 294.9710, 295.1710, & & 295.4460, 295.7470, 296.0720, 296.4210, 296.7710, & & 297.1460, 297.5710, 298.0210, 298.4460, 298.8460, & & 299.2460, 299.6450, 300.0210, 300.3710, 300.7200, & & 301.0450, 301.3460, 301.6710, 302.0200, 302.3450, & & 302.6450, 302.9700, 303.3450, 303.7200, 304.0700, & & 304.4700, 304.9200, 305.3440, 305.7700, 306.2450, & & 306.7190, 307.1700, 307.6440, 308.1190, 308.5440, & & 308.9440, 309.3440, 309.6940, 309.9440, 310.1190, & & 310.2440, 310.3190, 310.3190, 310.2440, 310.1440, & & 310.0690, 310.0440, 310.0690, 310.1440, 310.2690, & & 310.4440, 310.6940, 311.0430, 311.4440, 311.8690, & & 312.3680, 312.9430, 313.5430, 314.1680, 314.7900, & & 315.4430, 316.2150, 317.0170, 317.7370, 318.3400, & & 318.8680, 319.5900, 320.5890, 321.5470, 322.5770, & & 323.8440, 324.9260, 325.7960, 327.0810, 328.6180, & & 329.6830, 330.5250, 331.6880, 333.2120, 334.7870, & & 336.4640, 338.2990, 339.6660, 340.7310, 342.1360, & & 343.7200, 345.2200, 346.7350, 348.5820, 350.6740, & & 352.4230, 353.7910, 354.9530, 355.8210, 356.7130, & & 358.0630, 359.7720, 361.3970, 363.0900, 365.2560, & & 367.2810, 368.7980, 370.4000, 372.4550, 374.6920, & & 376.7440, 378.7440, 380.7580, 382.7080, 384.7300, & & 386.9310, 389.2150, 391.4910, 393.7710, 396.0460, & & 398.3240, 400.6080, 402.8950, 405.1780, 407.4550, & & 409.7260, 411.9930, 414.2500, 416.4410, 418.5280, & & 420.5250, 422.4390, 424.2720, 426.0200, 427.6750, & & 429.2360, 430.7050, 432.0850, 433.3580, 434.5140, & & 435.5740, 436.5490, 437.4420, 438.2550, 438.9810, & & 439.6110, 440.1430, 440.5770, 440.9450, 441.2660, & & 441.5410, 441.7840, 442.0050, 442.2040, 442.3780, & & 442.5210, 442.6200, 442.6720, 442.6810, 442.6540, & & 442.5830, 442.4670, 442.3270, 442.1680, 441.9960, & & 441.8060, 441.5930, 441.3440, 441.0540, 440.7230, & & 440.3510, 439.9300, 439.4650, 438.9730, 438.4630, & & 437.9400, 437.4020, 436.8400, 436.2640, 435.6850, & & 435.1030, 434.5160, 433.9170, 433.3060, 432.7010, & & 432.1110, 431.5380, 430.9810, 430.4320, 429.8860, & & 429.3370, 428.7810, 428.2220, 427.6490, 427.0660, & & 426.4890, 425.9270, 425.3840, 424.8610, 424.3540, & & 423.8540, 423.3540, 422.8530, 422.3510, 421.8410, & & 421.3250, 420.8190 / # else !! UKMO, run AJKKH + KAAEF, RCP 8.5, pCO2 time evolution DATA hist_pco2 / 286.0230, 286.1730, 286.3230, 286.4480, 286.5730, & & 286.7230, 286.8480, 286.9480, 287.0480, 287.1730, & & 287.3230, 287.4730, 287.6480, 287.8480, 288.0730, & & 288.3480, 288.6480, 288.9730, 289.3470, 289.7470, & & 290.1730, 290.6470, 291.1470, 291.6220, 292.0720, & & 292.5220, 292.9220, 293.2470, 293.5220, 293.7470, & & 293.9470, 294.1220, 294.2720, 294.4220, 294.5470, & & 294.6470, 294.7470, 294.8470, 294.9710, 295.1710, & & 295.4460, 295.7470, 296.0720, 296.4210, 296.7710, & & 297.1460, 297.5710, 298.0210, 298.4460, 298.8460, & & 299.2460, 299.6450, 300.0210, 300.3710, 300.7200, & & 301.0450, 301.3460, 301.6710, 302.0200, 302.3450, & & 302.6450, 302.9700, 303.3450, 303.7200, 304.0700, & & 304.4700, 304.9200, 305.3440, 305.7700, 306.2450, & & 306.7190, 307.1700, 307.6440, 308.1190, 308.5440, & & 308.9440, 309.3440, 309.6940, 309.9440, 310.1190, & & 310.2440, 310.3190, 310.3190, 310.2440, 310.1440, & & 310.0690, 310.0440, 310.0690, 310.1440, 310.2690, & & 310.4440, 310.6940, 311.0430, 311.4440, 311.8690, & & 312.3680, 312.9430, 313.5430, 314.1680, 314.7900, & & 315.4430, 316.2150, 317.0170, 317.7370, 318.3400, & & 318.8680, 319.5900, 320.5890, 321.5470, 322.5770, & & 323.8440, 324.9260, 325.7960, 327.0810, 328.6180, & & 329.6830, 330.5250, 331.6880, 333.2120, 334.7870, & & 336.4640, 338.2990, 339.6660, 340.7310, 342.1360, & & 343.7200, 345.2200, 346.7350, 348.5820, 350.6740, & & 352.4230, 353.7910, 354.9530, 355.8210, 356.7130, & & 358.0630, 359.7720, 361.3970, 363.0900, 365.2560, & & 367.2810, 368.7980, 370.4000, 372.4550, 374.6920, & & 376.7440, 378.7440, 380.7580, 382.7080, 384.7300, & & 386.9420, 389.2540, 391.5670, 393.9370, 396.3920, & & 398.9320, 401.5550, 404.2550, 407.0220, 409.8530, & & 412.7470, 415.7050, 418.7210, 421.7880, 424.9180, & & 428.1200, 431.3970, 434.7470, 438.1650, 441.6410, & & 445.1700, 448.7530, 452.3920, 456.0950, 459.8810, & & 463.7680, 467.7660, 471.8750, 476.0960, 480.4210, & & 484.8390, 489.3470, 493.9430, 498.6400, 503.4380, & & 508.3410, 513.3630, 518.5160, 523.8050, 529.2290, & & 534.7780, 540.4450, 546.2230, 552.1120, 558.1110, & & 564.2110, 570.4130, 576.7390, 583.1990, 589.7980, & & 596.5390, 603.4110, 610.4060, 617.4940, 624.6500, & & 631.8800, 639.1750, 646.5360, 653.9800, 661.5230, & & 669.1840, 676.9570, 684.8290, 692.7790, 700.7690, & & 708.8050, 716.8870, 725.0020, 733.1770, 741.3900, & & 749.6700, 758.0480, 766.5050, 775.0350, 783.6110, & & 792.2200, 800.8740, 809.5680, 818.2760, 827.0090, & & 835.8020, 844.6550, 853.5730, 862.5690, 871.6190, & & 880.7020, 889.8240, 898.9590, 908.1270, 917.3080, & & 926.4960, 935.7040 / # endif # if defined key_foam_medusa REAL(wp) :: xobs_xco2a !: Observed atmospheric xCO2, read in # endif #endif !!---------------------------------------------------------------------- !! Optical parameters !!---------------------------------------------------------------------- !! REAL(wp) :: xkr0 !: water coefficient absorption in red (NAMELIST) REAL(wp) :: xkg0 !: water coefficient absorption in green (NAMELIST) REAL(wp) :: xkrp !: pigment coefficient absorption in red (NAMELIST) REAL(wp) :: xkgp !: pigment coefficient absorption in green (NAMELIST) REAL(wp) :: xlr !: exposant for pigment absorption in red (NAMELIST) REAL(wp) :: xlg !: exposant for pigment absorption in green (NAMELIST) REAL(wp) :: rpig !: chla/chla+phea ratio (NAMELIST) INTEGER , ALLOCATABLE, SAVE, DIMENSION(:,:) :: neln !: number of levels in the euphotic layer REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:) :: xze !: euphotic layer depth REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: xpar !: par (photosynthetic available radiation) !!---------------------------------------------------------------------- !! Sediment parameters !! !! AXY (16/01/12): these parameters were originally part of the pre- !! cursor model on which MEDUSA's code was grounded; !! they do not relate to the sediment/benthos submodel !! added as part of the ROAM project; they have only !! been retained because they are distributed through !! MEDUSA and require a proper clean-up to purge !!---------------------------------------------------------------------- !! REAL(wp) :: sedlam !: time coefficient of POC remineralization in sediments REAL(wp) :: sedlostpoc !: ??? REAL(wp) :: areacot !: ??? REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:) :: dminl !: fraction of sinking POC released in sediments REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: dmin3 !: fraction of sinking POC released at each level REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:) :: sedpocb !: mass of POC in sediments REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:) :: sedpocn !: mass of POC in sediments REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:) :: sedpoca !: mass of POC in sediments REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:) :: fbodf !: rapid sinking particles REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:) :: fbods !: rapid sinking particles REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:) :: fbodn !: rapid sinking particles REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: ffln !: REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: fflf !: REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: ffls !: REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:) :: cmask !: ??? #if defined key_foam_medusa !!---------------------------------------------------------------------- !! Parameters required for ocean colour assimilation !!---------------------------------------------------------------------- !! REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:) :: pgrow_avg !: Mixed layer average phytoplankton growth REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:) :: ploss_avg !: Mixed layer average phytoplankton loss REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:) :: phyt_avg !: Mixed layer average phytoplankton REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:) :: mld_max !: Maximum mixed layer depth !! #endif !!---------------------------------------------------------------------- !! NEMO/TOP 3.3 , NEMO Consortium (2010) !! $Id$ !! Software governed by the CeCILL licence (NEMOGCM/NEMO_CeCILL.txt) !!---------------------------------------------------------------------- CONTAINS INTEGER FUNCTION sms_medusa_alloc() !!---------------------------------------------------------------------- !! *** ROUTINE sms_medusa_alloc *** !!---------------------------------------------------------------------- USE lib_mpp , ONLY: ctl_warn INTEGER :: ierr(9) ! Local variables !!---------------------------------------------------------------------- ierr(:) = 0 ! #if defined key_medusa !* depth-dependent damping coefficient ALLOCATE( remdmp(jpk,jp_medusa), STAT=ierr(1) ) # if defined key_roam !* 2D and 3D fields of carbonate system parameters ALLOCATE( f2_ccd_cal(jpi,jpj) , f2_ccd_arg(jpi,jpj) , & # if defined key_foam_medusa f2_pco2w(jpi,jpj) , f2_fco2w(jpi,jpj) , & # endif & f3_pH(jpi,jpj,jpk) , f3_h2co3(jpi,jpj,jpk), & & f3_hco3(jpi,jpj,jpk) , f3_co3(jpi,jpj,jpk) , & & f3_omcal(jpi,jpj,jpk), f3_omarg(jpi,jpj,jpk), STAT=ierr(2) ) !* 2D fields of organic and inorganic material sedimented on the seafloor ALLOCATE( zb_sed_n(jpi,jpj) , zn_sed_n(jpi,jpj) , & & za_sed_n(jpi,jpj) , & & zb_sed_fe(jpi,jpj) , zn_sed_fe(jpi,jpj) , & & za_sed_fe(jpi,jpj) , & & zb_sed_si(jpi,jpj) , zn_sed_si(jpi,jpj) , & & za_sed_si(jpi,jpj) , & & zb_sed_c(jpi,jpj) , zn_sed_c(jpi,jpj) , & & za_sed_c(jpi,jpj) , & & zb_sed_ca(jpi,jpj) , zn_sed_ca(jpi,jpj) , & & za_sed_ca(jpi,jpj) , STAT=ierr(3) ) !* 2D fields of temporally averaged properties for DMS calculations (AXY, 07/07/15) ALLOCATE( zb_dms_chn(jpi,jpj) , zn_dms_chn(jpi,jpj) , & & za_dms_chn(jpi,jpj) , & & zb_dms_chd(jpi,jpj) , zn_dms_chd(jpi,jpj) , & & za_dms_chd(jpi,jpj) , & & zb_dms_mld(jpi,jpj) , zn_dms_mld(jpi,jpj) , & & za_dms_mld(jpi,jpj) , & & zb_dms_qsr(jpi,jpj) , zn_dms_qsr(jpi,jpj) , & & za_dms_qsr(jpi,jpj) , & & zb_dms_din(jpi,jpj) , zn_dms_din(jpi,jpj) , & & za_dms_din(jpi,jpj) , STAT=ierr(4) ) !* 2D fields needing to be knows at first tstp for coupling with atm - !UKEMSi (Jpalm,14-06-2016) ALLOCATE( zb_co2_flx(jpi,jpj) , zn_co2_flx(jpi,jpj) , & & za_co2_flx(jpi,jpj) , & & zb_dms_srf(jpi,jpj) , zn_dms_srf(jpi,jpj) , & & za_dms_srf(jpi,jpj) , zn_chl_srf(jpi,jpj) , STAT=ierr(5) ) # endif !* 2D fields of miscellaneous parameters ALLOCATE( ocal_ccd(jpi,jpj) , dust(jpi,jpj) , & & zirondep(jpi,jpj) , & & riv_n(jpi,jpj) , & & riv_si(jpi,jpj) , riv_c(jpi,jpj) , & & riv_alk(jpi,jpj) , friver_dep(jpk,jpk) , STAT=ierr(6) ) !* 2D and 3D fields of light parameters ALLOCATE( neln(jpi,jpj) , xze(jpi,jpj) , & & xpar(jpi,jpj,jpk) , STAT=ierr(7) ) !* 2D and 3D fields of sediment-associated parameters ALLOCATE( dminl(jpi,jpj) , dmin3(jpi,jpj,jpk) , & & sedpocb(jpi,jpj) , sedpocn(jpi,jpj) , & & sedpoca(jpi,jpj) , fbodn(jpi,jpj) , & & fbodf(jpi,jpj) , fbods(jpi,jpj) , & & ffln(jpi,jpj,jpk) , fflf(jpi,jpj,jpk) , & & ffls(jpi,jpj,jpk) , cmask(jpi,jpj) , STAT=ierr(8) ) # if defined key_foam_medusa ALLOCATE( pgrow_avg(jpi,jpj) , ploss_avg(jpi,jpj) , & & phyt_avg(jpi,jpj) , mld_max(jpi,jpj) , STAT=ierr(9) ) # endif #endif ! sms_medusa_alloc = MAXVAL( ierr ) ! IF( sms_medusa_alloc /= 0 ) CALL ctl_warn('sms_medusa_alloc: failed to allocate arrays') ! END FUNCTION sms_medusa_alloc #else !!---------------------------------------------------------------------- !! Empty module : NO MEDUSA model !!---------------------------------------------------------------------- #endif !!====================================================================== END MODULE sms_medusa