!!-------------------------------------------------------------------- !! !! COMMON passivetrc.lobster1.h !! ******************************* !! !! purpose : !! --------- !! INCLUDE COMMON FILE for LOBSTER1 biological model (IF key_trc_lobster1) !! !! modifications : !! ------------- !! original : 99-09 (M. Levy) !! additions : 00-12 (O. Aumont, E. Kestenare): !! add sediment parameters !! !!--------------------------------------------------------------------- !! TOP 1.0 , LOCEAN-IPSL (2005) !! $Header$ !! This software is governed by the CeCILL licence see modipsl/doc/NEMO_CeCILL.txt !!--------------------------------------------------------------------- !! !! !!---------------------------------------------------------------------- !! !! biological parameters !! -------------------------------------------- !! !! apmin : minimum phytoplancton concentration (NAMELIST) !! azmin : minimum zooplancton concentration (NAMELIST) !! anmin : minimum nutrients concentration (NAMELIST) !! admin : minimum detritus concentration (NAMELIST) !! redf : redfield ratio c:n (NAMELIST) !! reddom : redfield ratio c:n for DOM !! slopet : van t hoff coefficient (NAMELIST) !! toptp : optimal photosynthesis temperature (NAMELIST) !! aknut : half-saturation nutrient (NAMELIST) !! akno3 : half-saturation for nitrate (NAMELIST) !! aknh4 : half-saturation for ammonium (NAMELIST) !! psinut : inhibition of nitrate uptake by ammonium (NAMELIST) !! rgamma : phytoplankton exudation fraction (NAMELIST) !! toptgz : optimal temperature for zooplankton growth (NAMELIST) !! tmaxgz : maximal temperature for zooplankton growth (NAMELIST) !! rgz : widtht of zooplankton temperature FUNCTION (NAMELIST) !! rppz : zooplankton nominal preference for phytoplancton !! food, (NAMELIST) !! taus : maximum specific zooplankton grazing rate (NAMELIST) !! aks : half saturation constant for total zooplankton !! grazing (NAMELIST) !! filmax : maximum mass clearance rate for zooplankton (NAMELIST) !! rpnaz : non-assimilated phytoplankton by zooplancton (NAMELIST) !! rdnaz : non-assimilated detritus by zooplankton (NAMELIST) !! eggzoo : minimum for zooplankton concentration (NAMELIST) !! tauzn : zooplancton specific excretion rate (NAMELIST) !! tmmaxp : maximal phytoplancton mortality rate (NAMELIST) !! tmminp : minimal phytoplancton mortality rate (NAMELIST) !! tmmaxz : maximal zooplankton mortality rate (NAMELIST) !! tmminz : minimal zooplankton mortality rate (NAMELIST) !! anumin : nutrient threshold for phytoplankton mortality (NAMELIST) !! afdmin : food threshold for zooplankton mortality (NAMELIST) !! taudn : detrital breakdown rate (NAMELIST) !! vsed : sedimentation speed (NAMELIST) !! tmumax : maximal phytoplankton growth rate (NAMELIST) !! aki : light photosynthesis half saturation constant (NAMELIST) !! !! tmaxr : maximum coefficient for passive tracer damping (NAMELIST) !! tminr : minimum coefficient for passive tracer damping (NAMELIST) !! remdmp() : damping coefficient of passive tracers (depth dependant) !! fdoml : fraction of exsudation that goes to nh4 (should be labile dom) !! taunn : nitrification rate !! taudomn : slow remineralization rate of semi-labile dom to nh4 !! xhr : coeff for Martin's remineralistion profile !! !! added by asklod AS Kremeur 2005-03: !! fphylab : NH4 fraction of phytoplankton excretion !! fzoolab : NH4 fraction of zooplankton excretion !! fdetlab : NH4 fraction of detritus dissolution !! fdbod : zooplankton mortality fraction that goes to detritus REAL apmin,azmin,anmin,admin, & redf,reddom,slopet,toptp,aknut,psinut,akno3,aknh4,rcchl, & rgamma,toptgz,tmaxgz,rgz, & rppz,taus,aks,filmax,rpnaz,rdnaz,eggzoo,tauzn, & tmmaxp,tmminp,tmmaxz,tmminz,anumin,afdmin,taudn, & vsed,tmumax,aki, & tmaxr,tminr,fdoml,taunn,taudomn,xhr, & fphylab,fzoolab,fdetlab,fdbod REAL remdmp(jpk,jptra) !! !! # if defined key_trc_diabio !! !!---------------------------------------------------------------------- !! !! biological trends !! ------------------------------------------------------------------ !! !! ctrbio : biological trends name (NAMELIST) !! ctrbil : biological trends long name (NAMELIST) !! ctrbiu : biological trends unit (NAMELIST) !! trbio() : biological trends !! CHARACTER*8 ctrbio(jpdiabio) CHARACTER*20 ctrbiu(jpdiabio) CHARACTER*80 ctrbil(jpdiabio) REAL trbio(jpi,jpj,jpk,jpdiabio) !! !! netcdf files and index COMMON biological trends files !! !! nwritebio: time step frequency for biological outputs (NAMELIST) ! asklod 10-2005: oubli de cette partie dans l update: !! nitb : id for additional array output FILE !! ndepitb : id for depth mesh !! nhoritb : id for horizontal mesh !! INTEGER nwritebio,nitb,ndepitb,nhoritb # endif !!---------------------------------------------------------------------- !! !! optical parameters !! ----------------------------------- !! !! xze : euphotic layer depth !! xpar : par (photosynthetic available radiation) !! xkr0 : water coefficient absorption in red (NAMELIST) !! xkg0 : water coefficient absorption in green (NAMELIST) !! xkrp : pigment coefficient absorption in red (NAMELIST) !! xkgp : pigment coefficient absorption in green (NAMELIST) !! xlr : exposant for pigment absorption in red (NAMELIST) !! xlg : exposant for pigment absorption in green (NAMELIST) !! rpig : chla/chla+phea ratio (NAMELIST) !! REAL xkr0,xkg0,xkrp,xkgp,xlr,xlg,rpig REAL xze(jpi,jpj) REAL xpar(jpi,jpj,jpk) !!---------------------------------------------------------------------- !! !! sediment parameters !! -------------------------------------- !! !! sedlam : time coefficient of POC remineralization in sediments !! dmin3 : fraction of sinking POC released at each level !! dminl : fraction of sinking POC released in sediments !! asklod add sedpocb, sedpocn, sedpoca 17 06 2005 !! sedpocb : mass of POC in sediments !! sedpocn : mass of POC in sediments !! sedpoca : mass of POC in sediments !! fbod : rapid sinking particles !! !! REAL sedlam,sedlostpoc REAL dmin3(jpi,jpj,jpk), dminl(jpi,jpj) REAL sedpoca(jpi,jpj),sedpocb(jpi,jpj),sedpocn(jpi,jpj) REAL fbod(jpi,jpj),cmask(jpi,jpj),areacot