# # ChangeLog for branches/NERC # # Generated by Trac 1.0.1 # 2024-04-25T02:06:17+02:00 Fri, 24 Nov 2017 13:45:14 GMT jpalmier [8807] * branches/NERC/dev_r5518_GO6_ScalingCoupledChl/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcnam_medusa.F90 (modified) JPALM -- Update scaling default value to 1. Fri, 24 Nov 2017 13:36:57 GMT jpalmier [8806] * branches/NERC/dev_r5518_GO6_ScalingCoupledChl/NEMOGCM/NEMO/TOP_SRC/MEDUSA/phytoplankton.F90 (modified) JPALM -- correct CHL_MLD hallo with lbc_lnk Thu, 23 Nov 2017 15:41:19 GMT jpalmier [8798] * branches/NERC/dev_r5518_GO6_conserv_Check (copied) Create branch Thu, 09 Nov 2017 16:58:38 GMT jpalmier [8686] * branches/NERC/dev_r5518_GO6_package_trdtrc/NEMOGCM/CONFIG/SHARED/field_def_bgc.xml (modified) * branches/NERC/dev_r5518_GO6_package_trdtrc/NEMOGCM/NEMO/TOP_SRC/TRP/trczdf.F90 (modified) correct passive trend zdf Tue, 07 Nov 2017 11:58:31 GMT jpalmier [8675] * branches/NERC/dev_r5518_GO6_package_trdtrc/NEMOGCM/CONFIG/SHARED/iodef_medusa_et_al.xml (modified) update iodef_medusa example Mon, 06 Nov 2017 16:25:01 GMT jpalmier [8674] * branches/NERC/dev_r5518_GO6_package_trdtrc (modified) * branches/NERC/dev_r5518_GO6_package_trdtrc/NEMOGCM (modified) * branches/NERC/dev_r5518_GO6_package_trdtrc/NEMOGCM/CONFIG/SHARED (modified) * branches/NERC/dev_r5518_GO6_package_trdtrc/NEMOGCM/CONFIG/SHARED/field_def_bgc.xml (modified) * branches/NERC/dev_r5518_GO6_package_trdtrc/NEMOGCM/NEMO (modified) * branches/NERC/dev_r5518_GO6_package_trdtrc/NEMOGCM/NEMO/OPA_SRC (modified) * branches/NERC/dev_r5518_GO6_package_trdtrc/NEMOGCM/NEMO/OPA_SRC/DIA/diaptr.F90 (modified) * branches/NERC/dev_r5518_GO6_package_trdtrc/NEMOGCM/NEMO/OPA_SRC/TRA/trabbl.F90 (modified) * branches/NERC/dev_r5518_GO6_package_trdtrc/NEMOGCM/NEMO/TOP_SRC/MEDUSA/air_sea.F90 (modified) * branches/NERC/dev_r5518_GO6_package_trdtrc/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_medusa_fin.F90 (modified) * branches/NERC/dev_r5518_GO6_package_trdtrc/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_medusa_init.F90 (modified) * branches/NERC/dev_r5518_GO6_package_trdtrc/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_medusa_mod.F90 (modified) * branches/NERC/dev_r5518_GO6_package_trdtrc/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_medusa_update.F90 (modified) * branches/NERC/dev_r5518_GO6_package_trdtrc/NEMOGCM/NEMO/TOP_SRC/MEDUSA/detritus.F90 (modified) * branches/NERC/dev_r5518_GO6_package_trdtrc/NEMOGCM/NEMO/TOP_SRC/MEDUSA/phytoplankton.F90 (modified) * branches/NERC/dev_r5518_GO6_package_trdtrc/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcnam_medusa.F90 (modified) * branches/NERC/dev_r5518_GO6_package_trdtrc/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcsms_medusa.F90 (modified) * branches/NERC/dev_r5518_GO6_package_trdtrc/NEMOGCM/NEMO/TOP_SRC/trc.F90 (modified) jpalm -- merge trdtrc branch with last GO6 package branch revision Mon, 06 Nov 2017 16:20:08 GMT jpalmier [8673] * branches/NERC/dev_r5518_GO6_package_trdtrc/NEMOGCM/CONFIG/SHARED/field_def_bgc.xml (modified) * branches/NERC/dev_r5518_GO6_package_trdtrc/NEMOGCM/NEMO/OPA_SRC/IOM/iom.F90 (modified) * branches/NERC/dev_r5518_GO6_package_trdtrc/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcsms_medusa.F90 (modified) JPALM -- include odd and even var group in IOM.F90 - secure SMS trends ... Fri, 03 Nov 2017 12:41:36 GMT jpalmier [8671] * branches/NERC/dev_r5518_GO6_ScalingCoupledChl/NEMOGCM/CONFIG/SHARED/field_def_bgc.xml (modified) * branches/NERC/dev_r5518_GO6_ScalingCoupledChl/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_medusa_diag_slice.F90 (modified) * branches/NERC/dev_r5518_GO6_ScalingCoupledChl/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_medusa_fin.F90 (modified) * branches/NERC/dev_r5518_GO6_ScalingCoupledChl/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcnam_medusa.F90 (modified) * branches/NERC/dev_r5518_GO6_ScalingCoupledChl/NEMOGCM/NEMO/TOP_SRC/trc.F90 (modified) Update MLD Chl - create a coupled var output group in field_def_bgc Wed, 25 Oct 2017 12:46:18 GMT jpalmier [8657] * branches/NERC/dev_r5518_GO6_COAREbulk (modified) * branches/NERC/dev_r5518_GO6_COAREbulk/DOC (modified) * branches/NERC/dev_r5518_GO6_COAREbulk/NEMOGCM (modified) * branches/NERC/dev_r5518_GO6_COAREbulk/NEMOGCM/CONFIG/SHARED (modified) * branches/NERC/dev_r5518_GO6_COAREbulk/NEMOGCM/CONFIG/SHARED/field_def_bgc.xml (modified) * branches/NERC/dev_r5518_GO6_COAREbulk/NEMOGCM/CONFIG/SHARED/namelist_ref (modified) * branches/NERC/dev_r5518_GO6_COAREbulk/NEMOGCM/CONFIG/SHARED/namelist_top_MEDUSA_et_al_cfg (deleted) * branches/NERC/dev_r5518_GO6_COAREbulk/NEMOGCM/CONFIG/SHARED/namelist_top_MEDUSA_et_al_ref (modified) * branches/NERC/dev_r5518_GO6_COAREbulk/NEMOGCM/CONFIG/cfg.txt (modified) * branches/NERC/dev_r5518_GO6_COAREbulk/NEMOGCM/NEMO (modified) * branches/NERC/dev_r5518_GO6_COAREbulk/NEMOGCM/NEMO/OPA_SRC (modified) * branches/NERC/dev_r5518_GO6_COAREbulk/NEMOGCM/NEMO/OPA_SRC/ASM/asmbkg.F90 (modified) * branches/NERC/dev_r5518_GO6_COAREbulk/NEMOGCM/NEMO/OPA_SRC/ASM/asminc.F90 (modified) * branches/NERC/dev_r5518_GO6_COAREbulk/NEMOGCM/NEMO/OPA_SRC/ASM/bias.F90 (copied) * branches/NERC/dev_r5518_GO6_COAREbulk/NEMOGCM/NEMO/OPA_SRC/ASM/biaspar.F90 (copied) * branches/NERC/dev_r5518_GO6_COAREbulk/NEMOGCM/NEMO/OPA_SRC/C1D/dynnxt_c1d.F90 (modified) * branches/NERC/dev_r5518_GO6_COAREbulk/NEMOGCM/NEMO/OPA_SRC/DIA/diainsitutem.F90 (copied) * branches/NERC/dev_r5518_GO6_COAREbulk/NEMOGCM/NEMO/OPA_SRC/DIA/diaptr.F90 (modified) * branches/NERC/dev_r5518_GO6_COAREbulk/NEMOGCM/NEMO/OPA_SRC/DIA/diawri.F90 (modified) * branches/NERC/dev_r5518_GO6_COAREbulk/NEMOGCM/NEMO/OPA_SRC/DOM/dom_oce.F90 (modified) * branches/NERC/dev_r5518_GO6_COAREbulk/NEMOGCM/NEMO/OPA_SRC/DYN/dynhpg.F90 (modified) * branches/NERC/dev_r5518_GO6_COAREbulk/NEMOGCM/NEMO/OPA_SRC/DYN/sshwzv.F90 (modified) * branches/NERC/dev_r5518_GO6_COAREbulk/NEMOGCM/NEMO/OPA_SRC/SBC/sbc_ice.F90 (modified) * branches/NERC/dev_r5518_GO6_COAREbulk/NEMOGCM/NEMO/OPA_SRC/SBC/sbccpl.F90 (modified) * branches/NERC/dev_r5518_GO6_COAREbulk/NEMOGCM/NEMO/OPA_SRC/SBC/sbcice_cice.F90 (modified) * branches/NERC/dev_r5518_GO6_COAREbulk/NEMOGCM/NEMO/OPA_SRC/TRA/eosbn2.F90 (modified) * branches/NERC/dev_r5518_GO6_COAREbulk/NEMOGCM/NEMO/OPA_SRC/TRA/trabbl.F90 (modified) * branches/NERC/dev_r5518_GO6_COAREbulk/NEMOGCM/NEMO/OPA_SRC/TRA/trasbc.F90 (modified) * branches/NERC/dev_r5518_GO6_COAREbulk/NEMOGCM/NEMO/OPA_SRC/nemogcm.F90 (modified) * branches/NERC/dev_r5518_GO6_COAREbulk/NEMOGCM/NEMO/OPA_SRC/step.F90 (modified) * branches/NERC/dev_r5518_GO6_COAREbulk/NEMOGCM/NEMO/OPA_SRC/step_oce.F90 (modified) * branches/NERC/dev_r5518_GO6_COAREbulk/NEMOGCM/NEMO/TOP_SRC/AGE/trcsms_age.F90 (modified) * branches/NERC/dev_r5518_GO6_COAREbulk/NEMOGCM/NEMO/TOP_SRC/C14b/trcnam_c14b.F90 (modified) * branches/NERC/dev_r5518_GO6_COAREbulk/NEMOGCM/NEMO/TOP_SRC/CFC/trcnam_cfc.F90 (modified) * branches/NERC/dev_r5518_GO6_COAREbulk/NEMOGCM/NEMO/TOP_SRC/CFC/trcsms_cfc.F90 (modified) * branches/NERC/dev_r5518_GO6_COAREbulk/NEMOGCM/NEMO/TOP_SRC/IDTRA/trcsms_idtra.F90 (modified) * branches/NERC/dev_r5518_GO6_COAREbulk/NEMOGCM/NEMO/TOP_SRC/MEDUSA/air_sea.F90 (copied) * branches/NERC/dev_r5518_GO6_COAREbulk/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_med_diag_iomput.F90 (copied) * branches/NERC/dev_r5518_GO6_COAREbulk/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_medusa_diag.F90 (copied) * branches/NERC/dev_r5518_GO6_COAREbulk/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_medusa_diag_slice.F90 (copied) * branches/NERC/dev_r5518_GO6_COAREbulk/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_medusa_fin.F90 (copied) * branches/NERC/dev_r5518_GO6_COAREbulk/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_medusa_init.F90 (copied) * branches/NERC/dev_r5518_GO6_COAREbulk/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_medusa_mod.F90 (copied) * branches/NERC/dev_r5518_GO6_COAREbulk/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_medusa_update.F90 (copied) * branches/NERC/dev_r5518_GO6_COAREbulk/NEMOGCM/NEMO/TOP_SRC/MEDUSA/carb_chem.F90 (copied) * branches/NERC/dev_r5518_GO6_COAREbulk/NEMOGCM/NEMO/TOP_SRC/MEDUSA/detritus.F90 (copied) * branches/NERC/dev_r5518_GO6_COAREbulk/NEMOGCM/NEMO/TOP_SRC/MEDUSA/detritus_fast_sink.F90 (copied) * branches/NERC/dev_r5518_GO6_COAREbulk/NEMOGCM/NEMO/TOP_SRC/MEDUSA/iron_chem_scav.F90 (copied) * branches/NERC/dev_r5518_GO6_COAREbulk/NEMOGCM/NEMO/TOP_SRC/MEDUSA/par_medusa.F90 (modified) * branches/NERC/dev_r5518_GO6_COAREbulk/NEMOGCM/NEMO/TOP_SRC/MEDUSA/phytoplankton.F90 (copied) * branches/NERC/dev_r5518_GO6_COAREbulk/NEMOGCM/NEMO/TOP_SRC/MEDUSA/plankton.F90 (copied) * branches/NERC/dev_r5518_GO6_COAREbulk/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcbio_medusa.F90 (modified) * branches/NERC/dev_r5518_GO6_COAREbulk/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcnam_medusa.F90 (modified) * branches/NERC/dev_r5518_GO6_COAREbulk/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcrst_medusa.F90 (deleted) * branches/NERC/dev_r5518_GO6_COAREbulk/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcsed_medusa.F90 (modified) * branches/NERC/dev_r5518_GO6_COAREbulk/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcsms_medusa.F90 (modified) * branches/NERC/dev_r5518_GO6_COAREbulk/NEMOGCM/NEMO/TOP_SRC/MEDUSA/zooplankton.F90 (copied) * branches/NERC/dev_r5518_GO6_COAREbulk/NEMOGCM/NEMO/TOP_SRC/TRP/trcadv.F90 (modified) * branches/NERC/dev_r5518_GO6_COAREbulk/NEMOGCM/NEMO/TOP_SRC/TRP/trctrp.F90 (modified) * branches/NERC/dev_r5518_GO6_COAREbulk/NEMOGCM/NEMO/TOP_SRC/par_trc.F90 (modified) * branches/NERC/dev_r5518_GO6_COAREbulk/NEMOGCM/NEMO/TOP_SRC/trc.F90 (modified) * branches/NERC/dev_r5518_GO6_COAREbulk/NEMOGCM/NEMO/TOP_SRC/trcini.F90 (modified) * branches/NERC/dev_r5518_GO6_COAREbulk/NEMOGCM/NEMO/TOP_SRC/trcnam.F90 (modified) * branches/NERC/dev_r5518_GO6_COAREbulk/NEMOGCM/NEMO/TOP_SRC/trcrst.F90 (modified) * branches/NERC/dev_r5518_GO6_COAREbulk/NEMOGCM/NEMO/TOP_SRC/trcsms.F90 (modified) * branches/NERC/dev_r5518_GO6_COAREbulk/NEMOGCM/NEMO/TOP_SRC/trcstp.F90 (modified) * branches/NERC/dev_r5518_GO6_COAREbulk/NEMOGCM/NEMO/TOP_SRC/trcwri.F90 (modified) update the branch to match last GO6 changes Fri, 20 Oct 2017 14:46:23 GMT jpalmier [8649] * branches/NERC/dev_r5518_GO6_Carb_Debug/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_medusa_fin.F90 (modified) * branches/NERC/dev_r5518_GO6_Carb_Debug/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcbio_medusa.F90 (modified) JPALM -- 20-10-17 -- ctl_warn text fix Thu, 19 Oct 2017 16:41:56 GMT jpalmier [8643] * branches/NERC/dev_r5518_GO6_Carb_Debug/NEMOGCM/NEMO/TOP_SRC/MEDUSA/air_sea.F90 (modified) * branches/NERC/dev_r5518_GO6_Carb_Debug/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcbio_medusa.F90 (modified) JPALM -- 19-10-17 -- Add ctl_warn for master node output Thu, 19 Oct 2017 16:10:44 GMT jpalmier [8642] * branches/NERC/dev_r5518_GO6_Carb_Debug/NEMOGCM/NEMO/TOP_SRC/MEDUSA/air_sea.F90 (modified) * branches/NERC/dev_r5518_GO6_Carb_Debug/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_medusa_init.F90 (modified) * branches/NERC/dev_r5518_GO6_Carb_Debug/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcbio_medusa.F90 (modified) * branches/NERC/dev_r5518_GO6_Carb_Debug/NEMOGCM/NEMO/TOP_SRC/TRP/trctrp.F90 (modified) * branches/NERC/dev_r5518_GO6_Carb_Debug/NEMOGCM/NEMO/TOP_SRC/trcrst.F90 (modified) * branches/NERC/dev_r5518_GO6_Carb_Debug/NEMOGCM/NEMO/TOP_SRC/trcstat.F90 (added) * branches/NERC/dev_r5518_GO6_Carb_Debug/NEMOGCM/NEMO/TOP_SRC/trcstp.F90 (modified) jpalm --19-10-17-- Carb failure due to 1-cell exceptionnal and ephemeral ... Thu, 19 Oct 2017 14:18:38 GMT jpalmier [8639] * branches/NERC/dev_r5518_GO6_Carb_Debug (copied) Create Branch - UKESM ticket 475 Wed, 18 Oct 2017 14:13:12 GMT jpalmier [8632] * branches/NERC/dev_r5518_GO6_ScalingCoupledChl/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_medusa_diag_slice.F90 (modified) * branches/NERC/dev_r5518_GO6_ScalingCoupledChl/NEMOGCM/NEMO/TOP_SRC/trcrst.F90 (modified) JPALM -- Coupled Chl -- set negative values to 0.0 Tue, 10 Oct 2017 10:43:01 GMT jpalmier [8607] * branches/NERC/dev_r5518_GO6_ScalingCoupledChl/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_medusa_diag_slice.F90 (modified) * branches/NERC/dev_r5518_GO6_ScalingCoupledChl/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_medusa_fin.F90 (modified) * branches/NERC/dev_r5518_GO6_ScalingCoupledChl/NEMOGCM/NEMO/TOP_SRC/MEDUSA/sms_medusa.F90 (modified) * branches/NERC/dev_r5518_GO6_ScalingCoupledChl/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcnam_medusa.F90 (modified) * branches/NERC/dev_r5518_GO6_ScalingCoupledChl/NEMOGCM/NEMO/TOP_SRC/trcrst.F90 (modified) JPALM -- enable to scale Chl sent to the UM and choose between surf or ... Wed, 04 Oct 2017 15:23:11 GMT jpalmier [8590] * branches/NERC/dev_r5518_GO6_ScalingCoupledChl (copied) creating branch Fri, 22 Sep 2017 15:23:46 GMT jpalmier [8560] * branches/NERC/dev_r5518_GO6_package_trdtrc/NEMOGCM/CONFIG/SHARED/field_def_bgc.xml (modified) * branches/NERC/dev_r5518_GO6_package_trdtrc/NEMOGCM/NEMO/TOP_SRC/TRP/trcsbc.F90 (modified) JPALM -- trdtrc -- Silly! SBC trend is 2D but trends routines are ... Fri, 22 Sep 2017 11:50:08 GMT jpalmier [8558] * branches/NERC/dev_r5518_GO6_package_trdtrc/NEMOGCM/CONFIG/SHARED/field_def_bgc.xml (modified) forgot to update trend grid_ref in field_def Fri, 22 Sep 2017 11:06:31 GMT jpalmier [8557] * branches/NERC/dev_r5518_GO6_package_trdtrc/NEMOGCM/CONFIG/SHARED/field_def_bgc.xml (modified) * branches/NERC/dev_r5518_GO6_package_trdtrc/NEMOGCM/NEMO/TOP_SRC/TRP/trcsbc.F90 (modified) JPALM -- trdtrc -- fix SBC trend (2D not 3D) -- remove DMP from XIOS ... Wed, 20 Sep 2017 11:07:27 GMT jpalmier [8549] * branches/NERC/dev_r5518_GO6_package_trdtrc/NEMOGCM/NEMO/OPA_SRC/TRA/tranxt.F90 (modified) JPALM -- trdtrc -- fix tran_xt_vvl for ATF trend Mon, 18 Sep 2017 16:36:54 GMT jpalmier [8535] * branches/NERC/dev_r5518_GO6_package_trdtrc/NEMOGCM/CONFIG/SHARED/field_def_bgc.xml (modified) * branches/NERC/dev_r5518_GO6_package_trdtrc/NEMOGCM/NEMO/OPA_SRC/TRA/tranxt.F90 (modified) JPALM -- trdtrc -- found ATF trend bug relative to TRC case Fri, 01 Sep 2017 15:28:24 GMT jpalmier [8490] * branches/NERC/dev_r5518_GO6_MEDUSA_conserv/NEMOGCM/CONFIG/SHARED/field_def_bgc.xml (modified) * branches/NERC/dev_r5518_GO6_MEDUSA_conserv/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_medusa_fin.F90 (modified) * branches/NERC/dev_r5518_GO6_MEDUSA_conserv/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcnam_medusa.F90 (modified) * branches/NERC/dev_r5518_GO6_MEDUSA_conserv/NEMOGCM/NEMO/TOP_SRC/trc.F90 (modified) JPALM -- mld chl -- remove quick and dirty hacks Fri, 01 Sep 2017 14:55:53 GMT jpalmier [8489] * branches/NERC/dev_r5518_GO6_MEDUSA_conserv/NEMOGCM/NEMO/OPA_SRC/TRA/trabbl.F90 (modified) * branches/NERC/dev_r5518_GO6_MEDUSA_conserv/NEMOGCM/NEMO/TOP_SRC/MEDUSA/air_sea.F90 (modified) * branches/NERC/dev_r5518_GO6_MEDUSA_conserv/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_medusa_fin.F90 (modified) * branches/NERC/dev_r5518_GO6_MEDUSA_conserv/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_medusa_init.F90 (modified) * branches/NERC/dev_r5518_GO6_MEDUSA_conserv/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_medusa_mod.F90 (modified) * branches/NERC/dev_r5518_GO6_MEDUSA_conserv/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_medusa_update.F90 (modified) * branches/NERC/dev_r5518_GO6_MEDUSA_conserv/NEMOGCM/NEMO/TOP_SRC/MEDUSA/detritus.F90 (modified) * branches/NERC/dev_r5518_GO6_MEDUSA_conserv/NEMOGCM/NEMO/TOP_SRC/MEDUSA/phytoplankton.F90 (modified) * branches/NERC/dev_r5518_GO6_MEDUSA_conserv/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcsms_medusa.F90 (modified) JPALM -- gmed ticket #346 : improve MEDUSA conservation -- import BBL ... Fri, 01 Sep 2017 14:35:06 GMT jpalmier [8487] * branches/NERC/dev_r5518_GO6_MEDUSA_conserv (copied) JPALM -- gmed ticket #346 -- branch creation Thu, 31 Aug 2017 17:44:18 GMT jpalmier [8479] * branches/NERC/dev_r5518_GO6_package_trdtrc/NEMOGCM/CONFIG/SHARED/field_def_bgc.xml (modified) JPALM -- trdtrc -- polish field_def_bgc Thu, 31 Aug 2017 12:15:56 GMT jpalmier [8475] * branches/NERC/dev_r5518_GO6_package_trdtrc/NEMOGCM/CONFIG/SHARED/field_def_bgc.xml (modified) * branches/NERC/dev_r5518_GO6_package_trdtrc/NEMOGCM/NEMO/TOP_SRC/TRP/trczdf.F90 (modified) JPALM -- trdtrc --add vertical integrated trends Tue, 29 Aug 2017 14:18:37 GMT jpalmier [8470] * branches/NERC/dev_r5518_GO6_package_trdtrc/NEMOGCM/NEMO/TOP_SRC/TRP/trcnxt.F90 (modified) * branches/NERC/dev_r5518_GO6_package_trdtrc/NEMOGCM/NEMO/TOP_SRC/TRP/trczdf.F90 (modified) * branches/NERC/dev_r5518_GO6_package_trdtrc/NEMOGCM/NEMO/TOP_SRC/TRP/trdtrc.F90 (modified) JPALM -- 29-08-2017 -- trends bug fix TOT, ZDF, ZDP Fri, 25 Aug 2017 16:56:36 GMT jpalmier [8467] * branches/NERC/dev_r5518_GO6_package_trdtrc/NEMOGCM/NEMO/TOP_SRC/TRP/trctrp.F90 (modified) * branches/NERC/dev_r5518_GO6_package_trdtrc/NEMOGCM/NEMO/TOP_SRC/TRP/trdtrc.F90 (modified) * branches/NERC/dev_r5518_GO6_package_trdtrc/NEMOGCM/NEMO/TOP_SRC/trcrst.F90 (modified) * branches/NERC/dev_r5518_GO6_package_trdtrc/NEMOGCM/NEMO/TOP_SRC/trcstat.F90 (added) * branches/NERC/dev_r5518_GO6_package_trdtrc/NEMOGCM/NEMO/TOP_SRC/trcstp.F90 (modified) JPALM -- 25-08-2017 -- improve trdtrc debug print statements Thu, 24 Aug 2017 17:05:09 GMT jpalmier [8463] * branches/NERC/dev_r5518_GO6_package_trdtrc/NEMOGCM/CONFIG/SHARED/field_def_bgc.xml (modified) * branches/NERC/dev_r5518_GO6_package_trdtrc/NEMOGCM/CONFIG/SHARED/namelist_top_MEDUSA_et_al_ref (modified) * branches/NERC/dev_r5518_GO6_package_trdtrc/NEMOGCM/CONFIG/SHARED/namelist_top_ref (modified) * branches/NERC/dev_r5518_GO6_package_trdtrc/NEMOGCM/NEMO/TOP_SRC/CFC/trcsms_cfc.F90 (modified) * branches/NERC/dev_r5518_GO6_package_trdtrc/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_medusa_update.F90 (modified) * branches/NERC/dev_r5518_GO6_package_trdtrc/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcsms_medusa.F90 (modified) * branches/NERC/dev_r5518_GO6_package_trdtrc/NEMOGCM/NEMO/TOP_SRC/trcnam.F90 (modified) JPALM - trdtrc - fixes, update field_def Tue, 22 Aug 2017 16:54:47 GMT jpalmier [8453] * branches/NERC/dev_r5518_GO6_package_trdtrc/NEMOGCM/CONFIG/SHARED/field_def_bgc.xml (modified) * branches/NERC/dev_r5518_GO6_package_trdtrc/NEMOGCM/NEMO/OPA_SRC/TRD/trd_oce.F90 (modified) * branches/NERC/dev_r5518_GO6_package_trdtrc/NEMOGCM/NEMO/OPA_SRC/TRD/trdtra.F90 (modified) * branches/NERC/dev_r5518_GO6_package_trdtrc/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_medusa_update.F90 (modified) * branches/NERC/dev_r5518_GO6_package_trdtrc/NEMOGCM/NEMO/TOP_SRC/TRP/trcnxt.F90 (modified) * branches/NERC/dev_r5518_GO6_package_trdtrc/NEMOGCM/NEMO/TOP_SRC/TRP/trczdf.F90 (modified) * branches/NERC/dev_r5518_GO6_package_trdtrc/NEMOGCM/NEMO/TOP_SRC/TRP/trdtrc.F90 (modified) * branches/NERC/dev_r5518_GO6_package_trdtrc/NEMOGCM/NEMO/TOP_SRC/trcnam.F90 (modified) JPALM --22-08-2017-- repair trends for passive tracers Tue, 22 Aug 2017 11:19:10 GMT jpalmier [8451] * branches/NERC/dev_r5518_GO6_package_trdtrc (copied) create branch to correct the passive tracer trends Fri, 11 Aug 2017 10:47:19 GMT jpalmier [8434] * branches/NERC/dev_r5518_GO6_split_trcbiomedusa/NEMOGCM/NEMO/TOP_SRC/AGE/trcsms_age.F90 (modified) * branches/NERC/dev_r5518_GO6_split_trcbiomedusa/NEMOGCM/NEMO/TOP_SRC/C14b/trcnam_c14b.F90 (modified) * branches/NERC/dev_r5518_GO6_split_trcbiomedusa/NEMOGCM/NEMO/TOP_SRC/CFC/trcnam_cfc.F90 (modified) * branches/NERC/dev_r5518_GO6_split_trcbiomedusa/NEMOGCM/NEMO/TOP_SRC/CFC/trcsms_cfc.F90 (modified) * branches/NERC/dev_r5518_GO6_split_trcbiomedusa/NEMOGCM/NEMO/TOP_SRC/IDTRA/trcsms_idtra.F90 (modified) * branches/NERC/dev_r5518_GO6_split_trcbiomedusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/air_sea.F90 (modified) * branches/NERC/dev_r5518_GO6_split_trcbiomedusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_med_diag_iomput.F90 (modified) * branches/NERC/dev_r5518_GO6_split_trcbiomedusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_med_diag_trc.F90 (deleted) * branches/NERC/dev_r5518_GO6_split_trcbiomedusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_medusa_diag.F90 (modified) * branches/NERC/dev_r5518_GO6_split_trcbiomedusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_medusa_diag_slice.F90 (modified) * branches/NERC/dev_r5518_GO6_split_trcbiomedusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_medusa_fin.F90 (modified) * branches/NERC/dev_r5518_GO6_split_trcbiomedusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_medusa_init.F90 (modified) * branches/NERC/dev_r5518_GO6_split_trcbiomedusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_medusa_mod.F90 (modified) * branches/NERC/dev_r5518_GO6_split_trcbiomedusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_medusa_update.F90 (modified) * branches/NERC/dev_r5518_GO6_split_trcbiomedusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcbio_medusa.F90 (modified) * branches/NERC/dev_r5518_GO6_split_trcbiomedusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcnam_medusa.F90 (modified) * branches/NERC/dev_r5518_GO6_split_trcbiomedusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcrst_medusa.F90 (deleted) * branches/NERC/dev_r5518_GO6_split_trcbiomedusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcsed_medusa.F90 (modified) * branches/NERC/dev_r5518_GO6_split_trcbiomedusa/NEMOGCM/NEMO/TOP_SRC/TRP/trcadv.F90 (modified) * branches/NERC/dev_r5518_GO6_split_trcbiomedusa/NEMOGCM/NEMO/TOP_SRC/TRP/trctrp.F90 (modified) * branches/NERC/dev_r5518_GO6_split_trcbiomedusa/NEMOGCM/NEMO/TOP_SRC/par_trc.F90 (modified) * branches/NERC/dev_r5518_GO6_split_trcbiomedusa/NEMOGCM/NEMO/TOP_SRC/trcini.F90 (modified) * branches/NERC/dev_r5518_GO6_split_trcbiomedusa/NEMOGCM/NEMO/TOP_SRC/trcnam.F90 (modified) * branches/NERC/dev_r5518_GO6_split_trcbiomedusa/NEMOGCM/NEMO/TOP_SRC/trcsms.F90 (modified) * branches/NERC/dev_r5518_GO6_split_trcbiomedusa/NEMOGCM/NEMO/TOP_SRC/trcstp.F90 (modified) * branches/NERC/dev_r5518_GO6_split_trcbiomedusa/NEMOGCM/NEMO/TOP_SRC/trcwri.F90 (modified) JPALM -- 11-08-2017 -- MEDUSA cleaned and purged Tue, 08 Aug 2017 14:14:00 GMT jpalmier [8423] * branches/NERC/dev_r5518_GO6_split_trcbiomedusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_medusa_fin.F90 (modified) * branches/NERC/dev_r5518_GO6_split_trcbiomedusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_medusa_update.F90 (modified) JPALM -- 08-08-2017 -- add conservation test - correct MEDUSA jn loop Tue, 08 Aug 2017 12:11:22 GMT jpalmier [8419] * branches/NERC/dev_r5518_GO6_split_trcbiomedusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_medusa_fin.F90 (modified) * branches/NERC/dev_r5518_GO6_split_trcbiomedusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_medusa_update.F90 (modified) * branches/NERC/dev_r5518_GO6_split_trcbiomedusa/NEMOGCM/NEMO/TOP_SRC/trcini.F90 (modified) JPALM -- 08-08-2017 -- clean trcbio_medusa split only - running this ... Mon, 31 Jul 2017 12:20:01 GMT jpalmier [8395] * branches/NERC/dev_r5518_GO6_split_trcbiomedusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/air_sea.F90 (added) * branches/NERC/dev_r5518_GO6_split_trcbiomedusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_med_diag_iomput.F90 (added) * branches/NERC/dev_r5518_GO6_split_trcbiomedusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_med_diag_trc.F90 (added) * branches/NERC/dev_r5518_GO6_split_trcbiomedusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_medusa_diag.F90 (added) * branches/NERC/dev_r5518_GO6_split_trcbiomedusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_medusa_diag_slice.F90 (added) * branches/NERC/dev_r5518_GO6_split_trcbiomedusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_medusa_fin.F90 (added) * branches/NERC/dev_r5518_GO6_split_trcbiomedusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_medusa_init.F90 (added) * branches/NERC/dev_r5518_GO6_split_trcbiomedusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_medusa_mod.F90 (added) * branches/NERC/dev_r5518_GO6_split_trcbiomedusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_medusa_update.F90 (added) * branches/NERC/dev_r5518_GO6_split_trcbiomedusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/carb_chem.F90 (added) * branches/NERC/dev_r5518_GO6_split_trcbiomedusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/detritus.F90 (added) * branches/NERC/dev_r5518_GO6_split_trcbiomedusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/detritus_fast_sink.F90 (added) * branches/NERC/dev_r5518_GO6_split_trcbiomedusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/iron_chem_scav.F90 (added) * branches/NERC/dev_r5518_GO6_split_trcbiomedusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/par_medusa.F90 (modified) * branches/NERC/dev_r5518_GO6_split_trcbiomedusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/phytoplankton.F90 (added) * branches/NERC/dev_r5518_GO6_split_trcbiomedusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/plankton.F90 (added) * branches/NERC/dev_r5518_GO6_split_trcbiomedusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcbio_medusa.F90 (modified) * branches/NERC/dev_r5518_GO6_split_trcbiomedusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/zooplankton.F90 (added) JPALM -- GMED #339 - split trcbio_medusa only Mon, 31 Jul 2017 11:19:59 GMT jpalmier [8394] * branches/NERC/dev_r5518_GO6_split_trcbiomedusa (copied) branch create Thu, 27 Jul 2017 16:53:07 GMT jpalmier [8391] * branches/NERC/dev_r5518_GO6_COAREbulk/NEMOGCM/NEMO/OPA_SRC/SBC/sbcblk_core.F90 (modified) JPALM -- add a COARE bulk patch for ocean-only run forced by Atm fileds ... Thu, 27 Jul 2017 16:39:15 GMT jpalmier [8390] * branches/NERC/dev_r5518_GO6_COAREbulk (copied) create branch for the COARE bulk patch Tue, 25 Jul 2017 16:58:24 GMT jpalmier [8372] * branches/NERC/dev_r5518_GO6_CleanMedusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_med_diag_trc.F90 (deleted) * branches/NERC/dev_r5518_GO6_CleanMedusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_medusa_diag.F90 (modified) * branches/NERC/dev_r5518_GO6_CleanMedusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_medusa_fin.F90 (modified) * branches/NERC/dev_r5518_GO6_CleanMedusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_medusa_init.F90 (modified) * branches/NERC/dev_r5518_GO6_CleanMedusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_medusa_update.F90 (modified) * branches/NERC/dev_r5518_GO6_CleanMedusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/par_medusa.F90 (modified) * branches/NERC/dev_r5518_GO6_CleanMedusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcbio_medusa.F90 (modified) * branches/NERC/dev_r5518_GO6_CleanMedusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcnam_medusa.F90 (modified) * branches/NERC/dev_r5518_GO6_CleanMedusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcrst_medusa.F90 (deleted) * branches/NERC/dev_r5518_GO6_CleanMedusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcsed_medusa.F90 (modified) JPALM -- debug switch TOP module call order ; remove trc2d and trc3d ... Wed, 19 Jul 2017 14:26:37 GMT jpalmier [8352] * branches/NERC/dev_r5518_GO6_CleanMedusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_medusa_fin.F90 (modified) * branches/NERC/dev_r5518_GO6_CleanMedusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcbio_medusa.F90 (modified) jpalm -- debug plus add conservation test print statement in debug mode Mon, 17 Jul 2017 17:43:02 GMT jpalmier [8345] * branches/NERC/dev_r5518_GO6_CleanMedusa/NEMOGCM/NEMO/TOP_SRC/AGE/par_age.F90 (modified) * branches/NERC/dev_r5518_GO6_CleanMedusa/NEMOGCM/NEMO/TOP_SRC/C14b/par_c14b.F90 (modified) * branches/NERC/dev_r5518_GO6_CleanMedusa/NEMOGCM/NEMO/TOP_SRC/CFC/par_cfc.F90 (modified) * branches/NERC/dev_r5518_GO6_CleanMedusa/NEMOGCM/NEMO/TOP_SRC/IDTRA/par_idtra.F90 (modified) * branches/NERC/dev_r5518_GO6_CleanMedusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/par_medusa.F90 (modified) * branches/NERC/dev_r5518_GO6_CleanMedusa/NEMOGCM/NEMO/TOP_SRC/MY_TRC/par_my_trc.F90 (modified) * branches/NERC/dev_r5518_GO6_CleanMedusa/NEMOGCM/NEMO/TOP_SRC/trcini.F90 (modified) * branches/NERC/dev_r5518_GO6_CleanMedusa/NEMOGCM/NEMO/TOP_SRC/trcnam.F90 (modified) * branches/NERC/dev_r5518_GO6_CleanMedusa/NEMOGCM/NEMO/TOP_SRC/trcsms.F90 (modified) * branches/NERC/dev_r5518_GO6_CleanMedusa/NEMOGCM/NEMO/TOP_SRC/trcwri.F90 (modified) jpalm -- swich back passive tracer module calling order Mon, 17 Jul 2017 17:37:09 GMT jpalmier [8344] * branches/NERC/dev_r5518_GO6_CleanMedusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/air_sea.F90 (added) * branches/NERC/dev_r5518_GO6_CleanMedusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_med_diag_iomput.F90 (added) * branches/NERC/dev_r5518_GO6_CleanMedusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_med_diag_trc.F90 (added) * branches/NERC/dev_r5518_GO6_CleanMedusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_medusa_diag.F90 (added) * branches/NERC/dev_r5518_GO6_CleanMedusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_medusa_diag_slice.F90 (added) * branches/NERC/dev_r5518_GO6_CleanMedusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_medusa_fin.F90 (added) * branches/NERC/dev_r5518_GO6_CleanMedusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_medusa_init.F90 (added) * branches/NERC/dev_r5518_GO6_CleanMedusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_medusa_mod.F90 (added) * branches/NERC/dev_r5518_GO6_CleanMedusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_medusa_update.F90 (added) * branches/NERC/dev_r5518_GO6_CleanMedusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/carb_chem.F90 (added) * branches/NERC/dev_r5518_GO6_CleanMedusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/detritus.F90 (added) * branches/NERC/dev_r5518_GO6_CleanMedusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/detritus_fast_sink.F90 (added) * branches/NERC/dev_r5518_GO6_CleanMedusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/iron_chem_scav.F90 (added) * branches/NERC/dev_r5518_GO6_CleanMedusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/phytoplankton.F90 (added) * branches/NERC/dev_r5518_GO6_CleanMedusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/plankton.F90 (added) * branches/NERC/dev_r5518_GO6_CleanMedusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcbio_medusa.F90 (modified) * branches/NERC/dev_r5518_GO6_CleanMedusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/zooplankton.F90 (added) * branches/NERC/dev_r5518_GO6_CleanMedusa/NEMOGCM/NEMO/TOP_SRC/PISCES/P2Z/p2zbio.F90 (modified) * branches/NERC/dev_r5518_GO6_CleanMedusa/NEMOGCM/NEMO/TOP_SRC/PISCES/P2Z/p2zsms.F90 (modified) * branches/NERC/dev_r5518_GO6_CleanMedusa/NEMOGCM/NEMO/TOP_SRC/PISCES/P4Z/p4zbio.F90 (modified) * branches/NERC/dev_r5518_GO6_CleanMedusa/NEMOGCM/NEMO/TOP_SRC/PISCES/P4Z/p4zche.F90 (modified) * branches/NERC/dev_r5518_GO6_CleanMedusa/NEMOGCM/NEMO/TOP_SRC/PISCES/P4Z/p4zflx.F90 (modified) * branches/NERC/dev_r5518_GO6_CleanMedusa/NEMOGCM/NEMO/TOP_SRC/PISCES/P4Z/p4zint.F90 (modified) * branches/NERC/dev_r5518_GO6_CleanMedusa/NEMOGCM/NEMO/TOP_SRC/PISCES/P4Z/p4zlim.F90 (modified) * branches/NERC/dev_r5518_GO6_CleanMedusa/NEMOGCM/NEMO/TOP_SRC/PISCES/P4Z/p4zlys.F90 (modified) * branches/NERC/dev_r5518_GO6_CleanMedusa/NEMOGCM/NEMO/TOP_SRC/PISCES/P4Z/p4zmeso.F90 (modified) * branches/NERC/dev_r5518_GO6_CleanMedusa/NEMOGCM/NEMO/TOP_SRC/PISCES/P4Z/p4zmicro.F90 (modified) * branches/NERC/dev_r5518_GO6_CleanMedusa/NEMOGCM/NEMO/TOP_SRC/PISCES/P4Z/p4zmort.F90 (modified) * branches/NERC/dev_r5518_GO6_CleanMedusa/NEMOGCM/NEMO/TOP_SRC/PISCES/P4Z/p4zopt.F90 (modified) * branches/NERC/dev_r5518_GO6_CleanMedusa/NEMOGCM/NEMO/TOP_SRC/PISCES/P4Z/p4zprod.F90 (modified) * branches/NERC/dev_r5518_GO6_CleanMedusa/NEMOGCM/NEMO/TOP_SRC/PISCES/P4Z/p4zsbc.F90 (modified) * branches/NERC/dev_r5518_GO6_CleanMedusa/NEMOGCM/NEMO/TOP_SRC/PISCES/P4Z/p4zsed.F90 (modified) * branches/NERC/dev_r5518_GO6_CleanMedusa/NEMOGCM/NEMO/TOP_SRC/PISCES/P4Z/p4zsink.F90 (modified) * branches/NERC/dev_r5518_GO6_CleanMedusa/NEMOGCM/NEMO/TOP_SRC/PISCES/P4Z/p4zsms.F90 (modified) * branches/NERC/dev_r5518_GO6_CleanMedusa/NEMOGCM/NEMO/TOP_SRC/PISCES/sms_pisces.F90 (modified) * branches/NERC/dev_r5518_GO6_CleanMedusa/NEMOGCM/NEMO/TOP_SRC/PISCES/trcice_pisces.F90 (modified) * branches/NERC/dev_r5518_GO6_CleanMedusa/NEMOGCM/NEMO/TOP_SRC/PISCES/trcini_pisces.F90 (modified) * branches/NERC/dev_r5518_GO6_CleanMedusa/NEMOGCM/NEMO/TOP_SRC/TRP/trcadv.F90 (modified) * branches/NERC/dev_r5518_GO6_CleanMedusa/NEMOGCM/NEMO/TOP_SRC/TRP/trcbbl.F90 (modified) * branches/NERC/dev_r5518_GO6_CleanMedusa/NEMOGCM/NEMO/TOP_SRC/TRP/trcdmp.F90 (modified) * branches/NERC/dev_r5518_GO6_CleanMedusa/NEMOGCM/NEMO/TOP_SRC/TRP/trcldf.F90 (modified) * branches/NERC/dev_r5518_GO6_CleanMedusa/NEMOGCM/NEMO/TOP_SRC/TRP/trcnam_trp.F90 (modified) * branches/NERC/dev_r5518_GO6_CleanMedusa/NEMOGCM/NEMO/TOP_SRC/TRP/trcnxt.F90 (modified) * branches/NERC/dev_r5518_GO6_CleanMedusa/NEMOGCM/NEMO/TOP_SRC/TRP/trcsbc.F90 (modified) * branches/NERC/dev_r5518_GO6_CleanMedusa/NEMOGCM/NEMO/TOP_SRC/TRP/trctrp.F90 (modified) * branches/NERC/dev_r5518_GO6_CleanMedusa/NEMOGCM/NEMO/TOP_SRC/oce_trc.F90 (modified) * branches/NERC/dev_r5518_GO6_CleanMedusa/NEMOGCM/NEMO/TOP_SRC/par_trc.F90 (modified) * branches/NERC/dev_r5518_GO6_CleanMedusa/NEMOGCM/NEMO/TOP_SRC/trcdta.F90 (modified) * branches/NERC/dev_r5518_GO6_CleanMedusa/NEMOGCM/NEMO/TOP_SRC/trcini.F90 (modified) * branches/NERC/dev_r5518_GO6_CleanMedusa/NEMOGCM/NEMO/TOP_SRC/trcnam.F90 (modified) * branches/NERC/dev_r5518_GO6_CleanMedusa/NEMOGCM/NEMO/TOP_SRC/trcsms.F90 (modified) * branches/NERC/dev_r5518_GO6_CleanMedusa/NEMOGCM/NEMO/TOP_SRC/trcstp.F90 (modified) jpalm -- split trcbio_medusa and clean debug printing-flush in common ... Mon, 17 Jul 2017 17:04:20 GMT jpalmier [8343] * branches/NERC/dev_r5518_GO6_CleanMedusa (copied) Create branch to clean trcbio_MEDUSA and Clean TOP -- GMED tickets 339 ... Sun, 25 Jun 2017 09:27:43 GMT jpalmier [8213] * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/MEDUSA/air_sea.F90 (added) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_med_diag_iomput.F90 (added) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_med_diag_trc.F90 (added) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_medusa_diag.F90 (added) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_medusa_diag_slice.F90 (added) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_medusa_fin.F90 (added) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_medusa_init.F90 (added) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_medusa_mod.F90 (added) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_medusa_update.F90 (added) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/MEDUSA/carb_chem.F90 (added) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/MEDUSA/detritus.F90 (added) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/MEDUSA/detritus_fast_sink.F90 (added) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/MEDUSA/iron_chem_scav.F90 (added) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/MEDUSA/phytoplankton.F90 (added) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/MEDUSA/plankton.F90 (added) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcbio_medusa.F90 (modified) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/MEDUSA/zooplankton.F90 (added) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/TRP/trcadv.F90 (modified) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/TRP/trctrp.F90 (modified) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/par_trc.F90 (modified) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/trcini.F90 (modified) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/trcnam.F90 (modified) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/trcsms.F90 (modified) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/trcstp.F90 (modified) JPALM -- split trcbio - mergeable-ish MEDUSA branch Thu, 22 Jun 2017 17:02:18 GMT jpalmier [8210] * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/OPA_SRC/SBC/sbcblk_core.F90 (modified) JPALM -- add COARE bulk patch for ocean-only forced by coupled-run atm Thu, 15 Jun 2017 16:50:54 GMT jpalmier [8182] * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcbio_medusa.F90 (modified) JPALM -- update MEDUSA xCO2 to CMIP6 value Wed, 07 Jun 2017 12:22:15 GMT jpalmier [8147] * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcini_medusa.F90 (modified) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/trcrst.F90 (modified) JPALM -- update Chl coupling variable init Mon, 05 Jun 2017 10:52:48 GMT jpalmier [8140] * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcbio_medusa.F90 (modified) JPALM -- Chl coupling - chloro_out_cpl unit adapted Mon, 05 Jun 2017 09:53:05 GMT jpalmier [8137] * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcbio_medusa.F90 (modified) JPALM -- debugg MEDUSA Fri, 02 Jun 2017 18:06:30 GMT jpalmier [8132] * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/CONFIG/SHARED/field_def_bgc.xml (modified) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/MEDUSA/sms_medusa.F90 (modified) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcbio_medusa.F90 (modified) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcdms_medusa.F90 (modified) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcini_medusa.F90 (modified) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/trc.F90 (modified) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/trcrst.F90 (modified) JPALM -- debug DMS update ; add surf Chl coupling for the atm component Fri, 02 Jun 2017 15:14:01 GMT jpalmier [8131] * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/CONFIG/SHARED/field_def_bgc.xml (modified) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcbio_medusa.F90 (modified) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcdms_medusa.F90 (modified) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcnam_medusa.F90 (modified) JPALM -- DMS add an updated version of ANDERSON sheme Fri, 02 Jun 2017 14:17:00 GMT jpalmier [8130] * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/CONFIG/SHARED/field_def_bgc.xml (modified) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/CFC/trcini_cfc.F90 (modified) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/CFC/trcsms_cfc.F90 (modified) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/trcini.F90 (modified) JPALM -- CFC module debugg - CFC12 and SF6 up-to-date and in action from ... Fri, 26 May 2017 11:36:58 GMT jpalmier [8082] * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/CONFIG/SHARED/cfc1112sf6.atm (added) JPALM -- forgot to add the up-to-date CFC-SF6 atm record file Thu, 25 May 2017 16:58:42 GMT jpalmier [8075] * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/CFC/par_cfc.F90 (modified) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/CFC/trcini_cfc.F90 (modified) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/CFC/trcsms_cfc.F90 (modified) JPALM -- update CFCs - add SF6 and update gas transfert param Thu, 25 May 2017 16:43:39 GMT jpalmier [8074] * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/MEDUSA/sms_medusa.F90 (modified) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcavg_medusa.F90 (modified) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcbio_medusa.F90 (modified) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcdms_medusa.F90 (modified) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcnam_medusa.F90 (modified) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcopt_medusa.F90 (modified) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcsed_medusa.F90 (modified) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcsms_medusa.F90 (modified) JPALM -- reverse MEDUSA cleaning and update MOCSY Tue, 09 May 2017 10:50:25 GMT frrh [8006] * branches/NERC/dev_r5518_MEDUSA_merge (deleted) Delete branch created in wrong location Tue, 09 May 2017 10:49:19 GMT frrh [8005] * branches/NERC/dev_r5518_MEDUSA_merge (copied) Copy of MEDUSA stable branch to merge nemo_v3_6_STABLE revisions into ... Tue, 11 Apr 2017 11:58:38 GMT jpalmier [7894] * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/MEDUSA/mocsy_mainmod.F90 (modified) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/MEDUSA/mocsy_wrapper.F90 (modified) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/MEDUSA/sms_medusa.F90 (modified) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcavg_medusa.F90 (modified) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcbio_medusa.F90 (modified) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcdms_medusa.F90 (modified) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcnam_medusa.F90 (modified) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcopt_medusa.F90 (modified) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcsed_medusa.F90 (modified) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcsms_medusa.F90 (modified) JPALM -- 11-04-2017 -- MEDUSA spring tidy-up refreshning session Thu, 06 Apr 2017 10:59:22 GMT marc [7880] * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcbio_medusa.F90 (modified) Marc 6/4/17. Fix bug where flatx is not set in call to mocsy_interface Tue, 07 Mar 2017 18:30:03 GMT jpalmier [7766] * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/CONFIG/SHARED/iodef_medusa_et_al.xml (modified) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/MEDUSA/sms_medusa.F90 (modified) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcbio_medusa.F90 (modified) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcdms_medusa.F90 (modified) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcdms_medusa.F90_COLIN4 (deleted) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcnam_medusa.F90 (modified) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcnam_medusa.F90_save (deleted) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcopt_medusa.F90 (modified) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcsed_medusa.F90 (modified) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcsms_medusa.F90 (modified) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/trcrst.F90 (modified) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/trcstp.F90 (modified) JPALM -- adapted MEDUSA_SBC to coupled mode, and merged this branch with ... Thu, 23 Feb 2017 10:23:56 GMT jpalmier [7720] * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcdms_medusa.F90_COLIN4 (added) JPALM -- 23-02-2017 -- add new DMS testing config Tue, 21 Feb 2017 15:46:07 GMT jpalmier [7709] * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/CONFIG/SHARED/XIOS2/iodef_medusa_et_al.xml (modified) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/CONFIG/SHARED/field_def_bgc_CMIP6.xml (deleted) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/CONFIG/SHARED/field_def_bgc_rev-7112.xml (deleted) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/CONFIG/SHARED/field_def_dyn_rev7515.xml (deleted) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/OPA_SRC/nemogcm.F90 (modified) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcnam_medusa.F90 (modified) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/trc.F90 (modified) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/trcini.F90 (modified) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/trcstp.F90 (modified) JPALM -- 21-02-2017 -- merge the branch with Richard optim branch, and ... Mon, 20 Feb 2017 12:00:57 GMT marc [7703] * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/AGE/par_age.F90 (modified) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/AGE/trcini_age.F90 (modified) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcbio_medusa.F90 (modified) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/trc.F90 (modified) Marc 20/2/17. Fix two bugs. Thu, 26 Jan 2017 11:07:04 GMT jpalmier [7611] * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/MEDUSA/mocsy_wrapper.F90 (modified) JPALM -- 26-01-2017 -- Fix MOCSY depth0 init value Wed, 21 Dec 2016 16:34:30 GMT jpalmier [7519] * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/CONFIG/SHARED/field_def_dyn.xml (modified) JPALM - field_def_dyn.xml debug Wed, 21 Dec 2016 16:12:57 GMT jpalmier [7518] * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/CONFIG/SHARED/field_def_dyn.xml (modified) JPALM - field_def_dyn.xml debug Wed, 21 Dec 2016 13:48:47 GMT jpalmier [7516] * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/CONFIG/SHARED/XIOS2/iodef_medusa_et_al.xml (modified) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/CONFIG/SHARED/field_def_bgc.xml (modified) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/CONFIG/SHARED/field_def_dyn.xml (modified) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/CONFIG/SHARED/field_def_dyn_rev7515.xml (added) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/CONFIG/SHARED/iodef_medusa_et_al.xml (modified) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/OPA_SRC/nemogcm.F90 (modified) JPALM - remove nemogcm debug printing statements to avoid conflicts - ... Thu, 15 Dec 2016 09:44:37 GMT timgraham [7498] * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/trcrst.F90 (modified) Fix for occasional truncation error in date in restart_trc filename Wed, 14 Dec 2016 15:46:28 GMT jpalmier [7497] * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcbio_medusa.F90 (modified) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/TRP/trcadv.F90 (modified) JPALM -- 14-12-2016 -- MEDUSA Diags update ; remove extra lbc-lnk Tue, 13 Dec 2016 16:46:21 GMT jpalmier [7493] * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/CONFIG/SHARED/XIOS2 (added) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/CONFIG/SHARED/XIOS2/field_def_bgc.xml (added) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/CONFIG/SHARED/XIOS2/field_def_bgc_CMIP6.xml (added) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/CONFIG/SHARED/XIOS2/iodef_medusa_et_al.xml (added) JPALM -- add XIOS-2 MEDUSA files Mon, 28 Nov 2016 11:28:56 GMT jpalmier [7348] * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/CONFIG/SHARED/field_def_bgc.xml (modified) JPALM -- 28-11-2016 -- forgot to update field_def_bgc.xml Mon, 28 Nov 2016 11:05:05 GMT jpalmier [7347] * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcbio_medusa.F90 (modified) JPALM -- 28-11-2016 -- MEDUSA bugfix Thu, 24 Nov 2016 17:47:51 GMT jpalmier [7331] * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/CONFIG/SHARED/field_def_bgc.xml (modified) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcbio_medusa.F90 (modified) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcnam_medusa.F90 (modified) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/trc.F90 (modified) JPALM -- 24-11-2016 -- MEDUSA-CMIP6 diags update/bugfix Fri, 18 Nov 2016 17:17:56 GMT jpalmier [7272] * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/CONFIG/SHARED/field_def_bgc.xml (modified) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcbio_medusa.F90 (modified) JPALM -- 18-11-2016 -- CMIP6 diag bugfix Fri, 18 Nov 2016 15:24:30 GMT jpalmier [7271] * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/CONFIG/SHARED/field_def_bgc.xml (modified) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcbio_medusa.F90 (modified) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcnam_medusa.F90 (modified) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/trc.F90 (modified) Jpalm -- 18-11-2016 -- CMIP6 diag-MEDUSA update Fri, 18 Nov 2016 12:27:57 GMT jamesharle [7268] * branches/NERC/dev_r6998_ORCHESTRA (modified) * branches/NERC/dev_r6998_ORCHESTRA/DOC (modified) * branches/NERC/dev_r6998_ORCHESTRA/NEMOGCM (modified) * branches/NERC/dev_r6998_ORCHESTRA/NEMOGCM/ARCH/OLD/NOC/arch-ALTIX_NAUTILUS.fcm (modified) * branches/NERC/dev_r6998_ORCHESTRA/NEMOGCM/ARCH/arch-ALTIX_NAUTILUS_MPT.fcm (modified) * branches/NERC/dev_r6998_ORCHESTRA/NEMOGCM/CONFIG/cfg.txt (modified) * branches/NERC/dev_r6998_ORCHESTRA/NEMOGCM/EXTERNAL/AGRIF (modified) * branches/NERC/dev_r6998_ORCHESTRA/NEMOGCM/NEMO/OPA_SRC/ZDF/zdfric.F90 (modified) * branches/NERC/dev_r6998_ORCHESTRA/NEMOGCM/NEMO/TOP_SRC/trcrst.F90 (modified) * branches/NERC/dev_r6998_ORCHESTRA/NEMOGCM/NEMO/TOP_SRC/trcsub.F90 (modified) * branches/NERC/dev_r6998_ORCHESTRA/NEMOGCM/TOOLS/MISCELLANEOUS/README_uspcfg (copied) * branches/NERC/dev_r6998_ORCHESTRA/NEMOGCM/TOOLS/MISCELLANEOUS/make_usp_tar.sh (copied) branch: NERC/dev_r6998_ORCHESTRA. merge with trunk@7161 Thu, 17 Nov 2016 16:16:37 GMT jpalmier [7254] * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/CONFIG/SHARED/field_def_bgc.xml (modified) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcbio_medusa.F90 (modified) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcnam_medusa.F90 (modified) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcoxy_medusa.F90 (modified) JPALM -- 17-11-2016 -- CMIP6 diags for MEDUSA bugfix Tue, 15 Nov 2016 12:08:07 GMT jpalmier [7228] * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/CONFIG/SHARED/field_def_bgc.xml (modified) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/CONFIG/SHARED/field_def_bgc_CMIP6.xml (added) JPALM --14-11-2015 -- add MEDUSA CMIP6 diags-update forgot field_def_bgc Tue, 15 Nov 2016 11:28:54 GMT jpalmier [7227] * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcbio_medusa.F90 (modified) JPALM --14-11-2015 -- add MEDUSA CMIP6 diags-update Mon, 14 Nov 2016 15:47:26 GMT jpalmier [7224] * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/CONFIG/SHARED/field_def_bgc.xml (modified) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/CONFIG/SHARED/field_def_bgc_rev-7112.xml (added) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcbio_medusa.F90 (modified) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcnam_medusa.F90 (modified) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/trc.F90 (modified) JPALM --14-11-2015 -- add MEDUSA CMIP6 diags Thu, 03 Nov 2016 16:00:56 GMT jpalmier [7185] * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/CONFIG/SHARED/namelist_cfc_v1_ref (added) forgot a namelist Fri, 28 Oct 2016 11:04:10 GMT jpalmier [7156] * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcbio_medusa.F90 (modified) JPALM -- 28-10-2016 -- correct CO2 flux conversion in MEDUSA Mon, 24 Oct 2016 12:46:59 GMT jpalmier [7075] * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/CONFIG/SHARED/1_cfc1112.atm (added) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/CONFIG/SHARED/field_def_bgc.xml (modified) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/CONFIG/SHARED/field_def_dyn.xml (modified) * 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branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/CONFIG/SHARED/namelist_top_medusa_idtra_cfg (deleted) JPALM -- 24-10-2016 -- pass tracers namelist and field_def* files in ... Fri, 14 Oct 2016 09:10:43 GMT jamesharle [7029] * branches/NERC/dev_r6998_ORCHESTRA/NEMOGCM/CONFIG/ORCHESTRA (added) * branches/NERC/dev_r6998_ORCHESTRA/NEMOGCM/CONFIG/ORCHESTRA/EXP00 (added) * branches/NERC/dev_r6998_ORCHESTRA/NEMOGCM/CONFIG/ORCHESTRA/MY_SRC (added) * branches/NERC/dev_r6998_ORCHESTRA/NEMOGCM/CONFIG/ORCHESTRA/MY_SRC/bdyini.F90 (added) * branches/NERC/dev_r6998_ORCHESTRA/NEMOGCM/CONFIG/ORCHESTRA/MY_SRC/daymod.F90 (added) * branches/NERC/dev_r6998_ORCHESTRA/NEMOGCM/CONFIG/ORCHESTRA/MY_SRC/iom.F90 (added) * branches/NERC/dev_r6998_ORCHESTRA/NEMOGCM/CONFIG/ORCHESTRA/cpp_ORCHESTRA.fcm (added) * branches/NERC/dev_r6998_ORCHESTRA/NEMOGCM/CONFIG/SHARED/namelist_ref (modified) * branches/NERC/dev_r6998_ORCHESTRA/NEMOGCM/CONFIG/cfg.txt (modified) * branches/NERC/dev_r6998_ORCHESTRA/NEMOGCM/NEMO/OPA_SRC/BDY/bdy_oce.F90 (modified) * branches/NERC/dev_r6998_ORCHESTRA/NEMOGCM/NEMO/OPA_SRC/BDY/bdydta.F90 (modified) * branches/NERC/dev_r6998_ORCHESTRA/NEMOGCM/NEMO/OPA_SRC/BDY/bdydyn3d.F90 (modified) * branches/NERC/dev_r6998_ORCHESTRA/NEMOGCM/NEMO/OPA_SRC/BDY/bdyini.F90 (modified) * branches/NERC/dev_r6998_ORCHESTRA/NEMOGCM/NEMO/OPA_SRC/BDY/bdylib.F90 (modified) * branches/NERC/dev_r6998_ORCHESTRA/NEMOGCM/NEMO/OPA_SRC/BDY/bdytra.F90 (modified) * branches/NERC/dev_r6998_ORCHESTRA/NEMOGCM/NEMO/OPA_SRC/DOM/dommsk.F90 (modified) * branches/NERC/dev_r6998_ORCHESTRA/NEMOGCM/NEMO/OPA_SRC/DYN/dynkeg.F90 (modified) * branches/NERC/dev_r6998_ORCHESTRA/NEMOGCM/NEMO/OPA_SRC/IOM/iom.F90 (modified) * branches/NERC/dev_r6998_ORCHESTRA/NEMOGCM/NEMO/OPA_SRC/IOM/iom_nf90.F90 (modified) * branches/NERC/dev_r6998_ORCHESTRA/NEMOGCM/NEMO/OPA_SRC/LBC/mppini_2.h90 (modified) * branches/NERC/dev_r6998_ORCHESTRA/NEMOGCM/NEMO/OPA_SRC/SBC/fldread.F90 (modified) Adding ORCHESTRA configuration Merging with ... Tue, 11 Oct 2016 14:20:23 GMT jpalmier [7017] * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcbio_medusa.F90 (modified) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcini_medusa.F90 (modified) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/trcrst.F90 (modified) Jpalm -- 11-10-2016 -- Improve MEDUSA reproducibility - change carb- ... Fri, 07 Oct 2016 07:26:01 GMT jamesharle [7004] * branches/NERC/dev_r6998_ORCHESTRA (copied) Create a specific branch for the NERC ORCHESTRA Configuration Fri, 23 Sep 2016 13:36:33 GMT jamesharle [6950] * branches/NERC/dev_r5840_BDY_MSK/NEMOGCM/NEMO/OPA_SRC/DOM/dommsk.F90 (modified) * branches/NERC/dev_r5840_BDY_MSK/NEMOGCM/NEMO/OPA_SRC/LBC/mppini_2.h90 (modified) update mppini_2.h90 to account for the bdy_msk (if used) to allow full ... Fri, 23 Sep 2016 12:56:46 GMT jamesharle [6948] * branches/NERC/dev_r5840_BDY_MSK/NEMOGCM/NEMO/OPA_SRC/BDY/bdyini.F90 (modified) * branches/NERC/dev_r5840_BDY_MSK/NEMOGCM/NEMO/OPA_SRC/DOM/dommsk.F90 (modified) updated masking code in bdyini.F90 and dommsk.F90 to properly account ... Fri, 23 Sep 2016 10:41:24 GMT jamesharle [6946] * branches/NERC/dev_r5840_BDY_MSK (copied) Address ticket #1618: bdy_msk not masking Fri, 05 Aug 2016 09:01:17 GMT jpalmier [6844] * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcsed_medusa.F90 (modified) repair dust forcing field reading freq Mon, 01 Aug 2016 16:30:32 GMT jpalmier [6829] * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/IDTRA/trcsms_idtra.F90 (modified) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcsed_medusa.F90 (modified) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/trcrst.F90 (modified) JPALM -- 01-08-2016 -- debug dust dep forcing reading : allowed non ... Wed, 20 Jul 2016 12:54:06 GMT jpalmier [6810] * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/IDTRA/trcsms_idtra.F90 (modified) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/MEDUSA/sms_medusa.F90 (modified) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcbio_medusa.F90 (modified) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcsed_medusa.F90 (modified) JPALM -- 20-07-2016 -- adapt dust conversion to SI dust-dep units ... 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branches/NERC/dev_r5549_BDY_ZEROGRAD/NEMOGCM/TOOLS/SIREN/src/variable.f90 (modified) * branches/NERC/dev_r5549_BDY_ZEROGRAD/NEMOGCM/TOOLS/SIREN/src/vgrid.f90 (modified) * branches/NERC/dev_r5549_BDY_ZEROGRAD/NEMOGCM/TOOLS/SIREN/templates/create_bathy.nam (modified) * branches/NERC/dev_r5549_BDY_ZEROGRAD/NEMOGCM/TOOLS/SIREN/templates/create_boundary.nam (modified) * branches/NERC/dev_r5549_BDY_ZEROGRAD/NEMOGCM/TOOLS/SIREN/templates/create_restart.nam (modified) * branches/NERC/dev_r5549_BDY_ZEROGRAD/NEMOGCM/TRUST (copied) * branches/NERC/dev_r5549_BDY_ZEROGRAD/NEMOGCM/fcm-make/inc/keys-orca2_lim.cfg (modified) * branches/NERC/dev_r5549_BDY_ZEROGRAD/NEMOGCM/fcm-make/inc/keys-orca2_lim3.cfg (modified) merge with trunk@6232 for consistency with SSB code Mon, 18 Jul 2016 09:49:32 GMT jamesharle [6807] * branches/NERC/dev_r5549_BDY_ZEROGRAD/NEMOGCM/NEMO/OPA_SRC/BDY/bdydyn3d.F90 (modified) * branches/NERC/dev_r5549_BDY_ZEROGRAD/NEMOGCM/NEMO/OPA_SRC/BDY/bdyini.F90 (modified) * branches/NERC/dev_r5549_BDY_ZEROGRAD/NEMOGCM/NEMO/OPA_SRC/BDY/bdylib.F90 (modified) * branches/NERC/dev_r5549_BDY_ZEROGRAD/NEMOGCM/NEMO/OPA_SRC/BDY/bdytra.F90 (modified) * branches/NERC/dev_r5549_BDY_ZEROGRAD/NEMOGCM/NEMO/OPA_SRC/DYN/dynkeg.F90 (modified) adding addtional boundary condtions to BDY: 1) zero-grad tangential ... Thu, 14 Jul 2016 11:16:48 GMT jpalmier [6806] * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcbio_medusa.F90 (modified) JPALM -- 14-07-2016 -- Bonnes fetes aux Frenchies -- ... Thu, 14 Jul 2016 08:45:01 GMT jamesharle [6805] * branches/NERC/dev_r5549_BDY_ZEROGRAD (copied) Create a branch for 3D zero gradient boundary conditions Fri, 08 Jul 2016 14:18:18 GMT jpalmier [6798] * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcini_medusa.F90 (modified) secure init coupling variable Wed, 06 Jul 2016 11:39:13 GMT jpalmier [6792] * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/OPA_SRC/oce.F90 (modified) update for coupling Mon, 27 Jun 2016 17:09:30 GMT jpalmier [6745] * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/trcrst.F90 (modified) debbug Mon, 27 Jun 2016 16:21:18 GMT jpalmier [6744] * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/OPA_SRC/oce.F90 (modified) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcbio_medusa.F90 (modified) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcsed_medusa.F90 (modified) * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/trcrst.F90 (modified) JPALM --27-06-2016 -- Update MEDUSA-atm coupling