#
# ChangeLog for branches/UKMO/HPC_loop_reordering/DOC/TexFiles/Top_Matter.tex
#
# Generated by Trac 1.0.1
# 2024-07-07T14:47:23+02:00

Mon, 04 Jun 2018 09:43:20 GMT mikebell [9730]
	* branches/UKMO/HPC_loop_reordering (copied)

	ticket #2095: test re-ordering of loops to improve HPC performance


Mon, 06 Feb 2017 09:25:03 GMT timgraham [7646]
	* trunk (modified)
	* trunk/DOC (modified)
	* trunk/DOC/NEMO_book.pdf (copied)
	* trunk/DOC/Namelists/nam_tide (modified)
	* trunk/DOC/Namelists/nambdy (modified)
	* trunk/DOC/Namelists/nambdy_dta (modified)
	* trunk/DOC/TexFiles/Bibliography/Biblio.bib (modified)
	* trunk/DOC/TexFiles/Chapters/Chap_CFG.tex (modified)
	* trunk/DOC/TexFiles/Chapters/Chap_DYN.tex (modified)
	* trunk/DOC/TexFiles/Chapters/Chap_LBC.tex (modified)
	* trunk/DOC/TexFiles/Chapters/Chap_MISC.tex (modified)
	* trunk/DOC/TexFiles/Chapters/Chap_SBC.tex (modified)
	* trunk/DOC/TexFiles/Top_Matter.tex (modified)
	* trunk/NEMOGCM (modified)
	* trunk/NEMOGCM/ARCH/INGV/arch-IBM_EKMAN_INGV.fcm (modified)
	* trunk/NEMOGCM/ARCH/OLD/NOC/arch-ALTIX_NAUTILUS.fcm (modified)
	* trunk/NEMOGCM/ARCH/arch-ALTIX_NAUTILUS_MPT.fcm (modified)
	* trunk/NEMOGCM/ARCH/arch-THALASSA.fcm (copied)
	* trunk/NEMOGCM/ARCH/arch-X64_ADA_DEBUG.fcm (copied)
	* trunk/NEMOGCM/ARCH/arch-X64_ADA_O0.fcm (deleted)
	* trunk/NEMOGCM/ARCH/arch-X64_MOBILIS.fcm (modified)
	* trunk/NEMOGCM/ARCH/arch-XC40_METO.fcm (modified)
	* trunk/NEMOGCM/ARCH/arch-macport_osx.fcm (modified)
	* trunk/NEMOGCM/ARCH/arch-macport_osx_debug.fcm (copied)
	* trunk/NEMOGCM/CONFIG/AMM12/EXP00/context_nemo.xml (copied)
	* trunk/NEMOGCM/CONFIG/AMM12/EXP00/domain_def.xml (deleted)
	* trunk/NEMOGCM/CONFIG/AMM12/EXP00/domain_def_nemo.xml (copied)
	* trunk/NEMOGCM/CONFIG/AMM12/EXP00/field_def.xml (deleted)
	* trunk/NEMOGCM/CONFIG/AMM12/EXP00/field_def_nemo-opa.xml (copied)
	* trunk/NEMOGCM/CONFIG/AMM12/EXP00/file_def_nemo-opa.xml (copied)
	* trunk/NEMOGCM/CONFIG/AMM12/EXP00/iodef.xml (modified)
	* trunk/NEMOGCM/CONFIG/AMM12/EXP00/namelist_cfg (modified)
	* trunk/NEMOGCM/CONFIG/AMM12/cpp_AMM12.fcm (modified)
	* trunk/NEMOGCM/CONFIG/C1D_PAPA/EXP00/namelist_cfg (modified)
	* trunk/NEMOGCM/CONFIG/GYRE (copied)
	* trunk/NEMOGCM/CONFIG/GYRE_BFM/EXP00/context_nemo.xml (copied)
	* trunk/NEMOGCM/CONFIG/GYRE_BFM/EXP00/domain_def.xml (deleted)
	* trunk/NEMOGCM/CONFIG/GYRE_BFM/EXP00/domain_def_nemo.xml (copied)
	* trunk/NEMOGCM/CONFIG/GYRE_BFM/EXP00/field_def.xml (deleted)
	* trunk/NEMOGCM/CONFIG/GYRE_BFM/EXP00/field_def_nemo-opa.xml (copied)
	* trunk/NEMOGCM/CONFIG/GYRE_BFM/EXP00/field_def_nemo-pisces.xml (copied)
	* trunk/NEMOGCM/CONFIG/GYRE_BFM/EXP00/file_def_nemo.xml (copied)
	* trunk/NEMOGCM/CONFIG/GYRE_BFM/EXP00/iodef.xml (modified)
	* trunk/NEMOGCM/CONFIG/GYRE_BFM/EXP00/namelist_cfg (modified)
	* trunk/NEMOGCM/CONFIG/GYRE_PISCES/EXP00/context_nemo.xml (copied)
	* trunk/NEMOGCM/CONFIG/GYRE_PISCES/EXP00/domain_def.xml (deleted)
	* trunk/NEMOGCM/CONFIG/GYRE_PISCES/EXP00/domain_def_nemo.xml (copied)
	* trunk/NEMOGCM/CONFIG/GYRE_PISCES/EXP00/field_def.xml (deleted)
	* trunk/NEMOGCM/CONFIG/GYRE_PISCES/EXP00/field_def_nemo-opa.xml (copied)
	* trunk/NEMOGCM/CONFIG/GYRE_PISCES/EXP00/field_def_nemo-pisces.xml (copied)
	* trunk/NEMOGCM/CONFIG/GYRE_PISCES/EXP00/file_def_nemo.xml (copied)
	* trunk/NEMOGCM/CONFIG/GYRE_PISCES/EXP00/iodef.xml (modified)
	* trunk/NEMOGCM/CONFIG/GYRE_PISCES/EXP00/namelist_cfg (modified)
	* trunk/NEMOGCM/CONFIG/GYRE_PISCES/EXP00/namelist_pisces_cfg (modified)
	* trunk/NEMOGCM/CONFIG/GYRE_PISCES/EXP00/namelist_top_cfg (modified)
	* trunk/NEMOGCM/CONFIG/GYRE_PISCES/cpp_GYRE_PISCES.fcm (modified)
	* trunk/NEMOGCM/CONFIG/GYRE_XIOS (deleted)
	* trunk/NEMOGCM/CONFIG/ISOMIP (copied)
	* trunk/NEMOGCM/CONFIG/ORCA2_LIM/EXP00/1_namelist_cfg (modified)
	* trunk/NEMOGCM/CONFIG/ORCA2_LIM/EXP00/context_nemo.xml (copied)
	* trunk/NEMOGCM/CONFIG/ORCA2_LIM/EXP00/domain_def.xml (deleted)
	* trunk/NEMOGCM/CONFIG/ORCA2_LIM/EXP00/domain_def_nemo.xml (copied)
	* trunk/NEMOGCM/CONFIG/ORCA2_LIM/EXP00/field_def.xml (deleted)
	* trunk/NEMOGCM/CONFIG/ORCA2_LIM/EXP00/field_def_nemo-lim.xml (copied)
	* trunk/NEMOGCM/CONFIG/ORCA2_LIM/EXP00/field_def_nemo-opa.xml (copied)
	* trunk/NEMOGCM/CONFIG/ORCA2_LIM/EXP00/file_def_nemo.xml (copied)
	* trunk/NEMOGCM/CONFIG/ORCA2_LIM/EXP00/iodef.xml (modified)
	* trunk/NEMOGCM/CONFIG/ORCA2_LIM/EXP00/iodef_ar5.xml (modified)
	* trunk/NEMOGCM/CONFIG/ORCA2_LIM/EXP00/iodef_crs.xml (modified)
	* trunk/NEMOGCM/CONFIG/ORCA2_LIM/EXP00/iodef_demo.xml (modified)
	* trunk/NEMOGCM/CONFIG/ORCA2_LIM/EXP00/iodef_oldstyle.xml (modified)
	* trunk/NEMOGCM/CONFIG/ORCA2_LIM/EXP00/namelist_cfg (modified)
	* trunk/NEMOGCM/CONFIG/ORCA2_LIM3/EXP00/1_namelist_cfg (modified)
	* trunk/NEMOGCM/CONFIG/ORCA2_LIM3/EXP00/1_namelist_ice_cfg (modified)
	* trunk/NEMOGCM/CONFIG/ORCA2_LIM3/EXP00/context_nemo.xml (copied)
	* trunk/NEMOGCM/CONFIG/ORCA2_LIM3/EXP00/domain_def.xml (deleted)
	* trunk/NEMOGCM/CONFIG/ORCA2_LIM3/EXP00/domain_def_nemo.xml (copied)
	* trunk/NEMOGCM/CONFIG/ORCA2_LIM3/EXP00/field_def.xml (deleted)
	* trunk/NEMOGCM/CONFIG/ORCA2_LIM3/EXP00/field_def_nemo-lim.xml (copied)
	* trunk/NEMOGCM/CONFIG/ORCA2_LIM3/EXP00/field_def_nemo-opa.xml (copied)
	* trunk/NEMOGCM/CONFIG/ORCA2_LIM3/EXP00/file_def_nemo.xml (copied)
	* trunk/NEMOGCM/CONFIG/ORCA2_LIM3/EXP00/iodef.xml (modified)
	* trunk/NEMOGCM/CONFIG/ORCA2_LIM3/EXP00/namelist_cfg (modified)
	* trunk/NEMOGCM/CONFIG/ORCA2_LIM3/EXP00/namelist_ice_cfg (modified)
	* trunk/NEMOGCM/CONFIG/ORCA2_LIM3_PISCES (copied)
	* trunk/NEMOGCM/CONFIG/ORCA2_LIM_CFC_C14b (deleted)
	* trunk/NEMOGCM/CONFIG/ORCA2_LIM_PISCES (deleted)
	* trunk/NEMOGCM/CONFIG/ORCA2_OFF_PISCES/EXP00/context_nemo.xml (copied)
	* trunk/NEMOGCM/CONFIG/ORCA2_OFF_PISCES/EXP00/domain_def.xml (deleted)
	* trunk/NEMOGCM/CONFIG/ORCA2_OFF_PISCES/EXP00/domain_def_nemo.xml (copied)
	* trunk/NEMOGCM/CONFIG/ORCA2_OFF_PISCES/EXP00/field_def.xml (deleted)
	* trunk/NEMOGCM/CONFIG/ORCA2_OFF_PISCES/EXP00/field_def_nemo-pisces.xml (copied)
	* trunk/NEMOGCM/CONFIG/ORCA2_OFF_PISCES/EXP00/file_def_nemo.xml (copied)
	* trunk/NEMOGCM/CONFIG/ORCA2_OFF_PISCES/EXP00/iodef.xml (modified)
	* trunk/NEMOGCM/CONFIG/ORCA2_OFF_PISCES/EXP00/namelist_cfg (modified)
	* trunk/NEMOGCM/CONFIG/ORCA2_OFF_PISCES/EXP00/namelist_pisces_cfg (modified)
	* trunk/NEMOGCM/CONFIG/ORCA2_OFF_PISCES/EXP00/namelist_top_cfg (modified)
	* trunk/NEMOGCM/CONFIG/ORCA2_OFF_PISCES/IGCM00 (deleted)
	* trunk/NEMOGCM/CONFIG/ORCA2_OFF_PISCES/cpp_ORCA2_OFF_PISCES.fcm (modified)
	* trunk/NEMOGCM/CONFIG/ORCA2_OFF_TRC (copied)
	* trunk/NEMOGCM/CONFIG/ORCA2_SAS_LIM/EXP00/context_nemo.xml (copied)
	* trunk/NEMOGCM/CONFIG/ORCA2_SAS_LIM/EXP00/domain_def.xml (deleted)
	* trunk/NEMOGCM/CONFIG/ORCA2_SAS_LIM/EXP00/domain_def_nemo.xml (copied)
	* trunk/NEMOGCM/CONFIG/ORCA2_SAS_LIM/EXP00/field_def.xml (deleted)
	* trunk/NEMOGCM/CONFIG/ORCA2_SAS_LIM/EXP00/field_def_nemo-lim.xml (copied)
	* trunk/NEMOGCM/CONFIG/ORCA2_SAS_LIM/EXP00/field_def_nemo-opa.xml (copied)
	* trunk/NEMOGCM/CONFIG/ORCA2_SAS_LIM/EXP00/file_def_nemo.xml (copied)
	* trunk/NEMOGCM/CONFIG/ORCA2_SAS_LIM/EXP00/iodef.xml (modified)
	* trunk/NEMOGCM/CONFIG/ORCA2_SAS_LIM/EXP00/namelist_cfg (modified)
	* trunk/NEMOGCM/CONFIG/ORCA2_SAS_LIM/IDL_scripts (deleted)
	* trunk/NEMOGCM/CONFIG/ORCA2_SAS_LIM3 (copied)
	* trunk/NEMOGCM/CONFIG/SHARED (modified)
	* trunk/NEMOGCM/CONFIG/SHARED/ForXIOS2 (copied)
	* trunk/NEMOGCM/CONFIG/SHARED/domain_def.xml (deleted)
	* trunk/NEMOGCM/CONFIG/SHARED/domain_def_nemo.xml (copied)
	* trunk/NEMOGCM/CONFIG/SHARED/field_def.xml (deleted)
	* trunk/NEMOGCM/CONFIG/SHARED/field_def_nemo-lim.xml (copied)
	* trunk/NEMOGCM/CONFIG/SHARED/field_def_nemo-opa.xml (copied)
	* trunk/NEMOGCM/CONFIG/SHARED/field_def_nemo-pisces.xml (copied)
	* trunk/NEMOGCM/CONFIG/SHARED/namelist_c14b_ref (deleted)
	* trunk/NEMOGCM/CONFIG/SHARED/namelist_cfc_ref (deleted)
	* trunk/NEMOGCM/CONFIG/SHARED/namelist_ice_lim3_ref (modified)
	* trunk/NEMOGCM/CONFIG/SHARED/namelist_pisces_ref (modified)
	* trunk/NEMOGCM/CONFIG/SHARED/namelist_ref (modified)
	* trunk/NEMOGCM/CONFIG/SHARED/namelist_top_ref (modified)
	* trunk/NEMOGCM/CONFIG/SHARED/namelist_trc_ref (copied)
	* trunk/NEMOGCM/CONFIG/TEST_CASES (copied)
	* trunk/NEMOGCM/CONFIG/cfg.txt (modified)
	* trunk/NEMOGCM/CONFIG/makenemo (modified)
	* trunk/NEMOGCM/EXTERNAL/AGRIF (modified)
	* trunk/NEMOGCM/NEMO (modified)
	* trunk/NEMOGCM/NEMO/LIM_SRC_2/dom_ice_2.F90 (modified)
	* trunk/NEMOGCM/NEMO/LIM_SRC_2/iceini_2.F90 (modified)
	* trunk/NEMOGCM/NEMO/LIM_SRC_2/limdmp_2.F90 (modified)
	* trunk/NEMOGCM/NEMO/LIM_SRC_2/limdyn_2.F90 (modified)
	* trunk/NEMOGCM/NEMO/LIM_SRC_2/limistate_2.F90 (modified)
	* trunk/NEMOGCM/NEMO/LIM_SRC_2/limmsh_2.F90 (modified)
	* trunk/NEMOGCM/NEMO/LIM_SRC_2/limrhg.F90 (deleted)
	* trunk/NEMOGCM/NEMO/LIM_SRC_2/limrhg_2.F90 (modified)
	* trunk/NEMOGCM/NEMO/LIM_SRC_2/limsbc_2.F90 (modified)
	* trunk/NEMOGCM/NEMO/LIM_SRC_2/limthd_2.F90 (modified)
	* trunk/NEMOGCM/NEMO/LIM_SRC_2/limtrp_2.F90 (modified)
	* trunk/NEMOGCM/NEMO/LIM_SRC_3/dom_ice.F90 (deleted)
	* trunk/NEMOGCM/NEMO/LIM_SRC_3/ice.F90 (modified)
	* trunk/NEMOGCM/NEMO/LIM_SRC_3/limadv.F90 (deleted)
	* trunk/NEMOGCM/NEMO/LIM_SRC_3/limadv_prather.F90 (copied)
	* trunk/NEMOGCM/NEMO/LIM_SRC_3/limadv_umx.F90 (copied)
	* trunk/NEMOGCM/NEMO/LIM_SRC_3/limcons.F90 (modified)
	* trunk/NEMOGCM/NEMO/LIM_SRC_3/limctl.F90 (modified)
	* trunk/NEMOGCM/NEMO/LIM_SRC_3/limdiahsb.F90 (modified)
	* trunk/NEMOGCM/NEMO/LIM_SRC_3/limdyn.F90 (modified)
	* trunk/NEMOGCM/NEMO/LIM_SRC_3/limhdf.F90 (modified)
	* trunk/NEMOGCM/NEMO/LIM_SRC_3/limistate.F90 (modified)
	* trunk/NEMOGCM/NEMO/LIM_SRC_3/limitd_me.F90 (modified)
	* trunk/NEMOGCM/NEMO/LIM_SRC_3/limitd_th.F90 (modified)
	* trunk/NEMOGCM/NEMO/LIM_SRC_3/limmsh.F90 (deleted)
	* trunk/NEMOGCM/NEMO/LIM_SRC_3/limrhg.F90 (modified)
	* trunk/NEMOGCM/NEMO/LIM_SRC_3/limrst.F90 (modified)
	* trunk/NEMOGCM/NEMO/LIM_SRC_3/limsbc.F90 (modified)
	* trunk/NEMOGCM/NEMO/LIM_SRC_3/limthd.F90 (modified)
	* trunk/NEMOGCM/NEMO/LIM_SRC_3/limthd_da.F90 (copied)
	* trunk/NEMOGCM/NEMO/LIM_SRC_3/limthd_dh.F90 (modified)
	* trunk/NEMOGCM/NEMO/LIM_SRC_3/limthd_dif.F90 (modified)
	* trunk/NEMOGCM/NEMO/LIM_SRC_3/limthd_lac.F90 (modified)
	* trunk/NEMOGCM/NEMO/LIM_SRC_3/limthd_sal.F90 (modified)
	* trunk/NEMOGCM/NEMO/LIM_SRC_3/limtrp.F90 (modified)
	* trunk/NEMOGCM/NEMO/LIM_SRC_3/limupdate1.F90 (modified)
	* trunk/NEMOGCM/NEMO/LIM_SRC_3/limupdate2.F90 (modified)
	* trunk/NEMOGCM/NEMO/LIM_SRC_3/limvar.F90 (modified)
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	* trunk/NEMOGCM/NEMO/NST_SRC/agrif_ice.F90 (modified)
	* trunk/NEMOGCM/NEMO/NST_SRC/agrif_lim3_interp.F90 (copied)
	* trunk/NEMOGCM/NEMO/NST_SRC/agrif_lim3_update.F90 (copied)
	* trunk/NEMOGCM/NEMO/NST_SRC/agrif_opa_interp.F90 (modified)
	* trunk/NEMOGCM/NEMO/NST_SRC/agrif_opa_sponge.F90 (modified)
	* trunk/NEMOGCM/NEMO/NST_SRC/agrif_opa_update.F90 (modified)
	* trunk/NEMOGCM/NEMO/NST_SRC/agrif_user.F90 (modified)
	* trunk/NEMOGCM/NEMO/OFF_SRC/domrea.F90 (deleted)
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	* trunk/NEMOGCM/NEMO/OPA_SRC/SBC/sbcana.F90 (deleted)
	* trunk/NEMOGCM/NEMO/OPA_SRC/SBC/sbcblk.F90 (copied)
	* trunk/NEMOGCM/NEMO/OPA_SRC/SBC/sbcblk_algo_coare.F90 (copied)
	* trunk/NEMOGCM/NEMO/OPA_SRC/SBC/sbcblk_algo_coare3p5.F90 (copied)
	* trunk/NEMOGCM/NEMO/OPA_SRC/SBC/sbcblk_algo_ecmwf.F90 (copied)
	* trunk/NEMOGCM/NEMO/OPA_SRC/SBC/sbcblk_algo_ncar.F90 (copied)
	* trunk/NEMOGCM/NEMO/OPA_SRC/SBC/sbcblk_clio.F90 (deleted)
	* trunk/NEMOGCM/NEMO/OPA_SRC/SBC/sbcblk_core.F90 (deleted)
	* trunk/NEMOGCM/NEMO/OPA_SRC/SBC/sbcblk_mfs.F90 (deleted)
	* trunk/NEMOGCM/NEMO/OPA_SRC/SBC/sbccpl.F90 (modified)
	* trunk/NEMOGCM/NEMO/OPA_SRC/SBC/sbcice_cice.F90 (modified)
	* trunk/NEMOGCM/NEMO/OPA_SRC/SBC/sbcice_if.F90 (modified)
	* trunk/NEMOGCM/NEMO/OPA_SRC/SBC/sbcice_lim.F90 (modified)
	* trunk/NEMOGCM/NEMO/OPA_SRC/SBC/sbcice_lim_2.F90 (modified)
	* trunk/NEMOGCM/NEMO/OPA_SRC/SBC/sbcisf.F90 (modified)
	* trunk/NEMOGCM/NEMO/OPA_SRC/SBC/sbcmod.F90 (modified)
	* trunk/NEMOGCM/NEMO/OPA_SRC/SBC/sbcrnf.F90 (modified)
	* trunk/NEMOGCM/NEMO/OPA_SRC/SBC/sbcssm.F90 (modified)
	* trunk/NEMOGCM/NEMO/OPA_SRC/SBC/sbcssr.F90 (modified)
	* trunk/NEMOGCM/NEMO/OPA_SRC/SBC/sbctide.F90 (modified)
	* trunk/NEMOGCM/NEMO/OPA_SRC/SBC/sbcwave.F90 (modified)
	* trunk/NEMOGCM/NEMO/OPA_SRC/SBC/tideini.F90 (modified)
	* trunk/NEMOGCM/NEMO/OPA_SRC/SBC/updtide.F90 (modified)
	* trunk/NEMOGCM/NEMO/OPA_SRC/TRA/eosbn2.F90 (modified)
	* trunk/NEMOGCM/NEMO/OPA_SRC/TRA/traadv.F90 (modified)
	* trunk/NEMOGCM/NEMO/OPA_SRC/TRA/traadv_cen.F90 (modified)
	* trunk/NEMOGCM/NEMO/OPA_SRC/TRA/traadv_fct.F90 (modified)
	* trunk/NEMOGCM/NEMO/OPA_SRC/TRA/traadv_mle.F90 (modified)
	* trunk/NEMOGCM/NEMO/OPA_SRC/TRA/traadv_mus.F90 (modified)
	* trunk/NEMOGCM/NEMO/OPA_SRC/TRA/traadv_qck.F90 (modified)
	* trunk/NEMOGCM/NEMO/OPA_SRC/TRA/traadv_ubs.F90 (modified)
	* trunk/NEMOGCM/NEMO/OPA_SRC/TRA/trabbc.F90 (modified)
	* trunk/NEMOGCM/NEMO/OPA_SRC/TRA/trabbl.F90 (modified)
	* trunk/NEMOGCM/NEMO/OPA_SRC/TRA/tradmp.F90 (modified)
	* trunk/NEMOGCM/NEMO/OPA_SRC/TRA/traldf.F90 (modified)
	* trunk/NEMOGCM/NEMO/OPA_SRC/TRA/traldf_iso.F90 (modified)
	* trunk/NEMOGCM/NEMO/OPA_SRC/TRA/traldf_lap_blp.F90 (modified)
	* trunk/NEMOGCM/NEMO/OPA_SRC/TRA/traldf_triad.F90 (modified)
	* trunk/NEMOGCM/NEMO/OPA_SRC/TRA/tranxt.F90 (modified)
	* trunk/NEMOGCM/NEMO/OPA_SRC/TRA/traqsr.F90 (modified)
	* trunk/NEMOGCM/NEMO/OPA_SRC/TRA/trazdf.F90 (modified)
	* trunk/NEMOGCM/NEMO/OPA_SRC/TRD/trd_oce.F90 (modified)
	* trunk/NEMOGCM/NEMO/OPA_SRC/TRD/trdini.F90 (modified)
	* trunk/NEMOGCM/NEMO/OPA_SRC/TRD/trdken.F90 (modified)
	* trunk/NEMOGCM/NEMO/OPA_SRC/TRD/trdtra.F90 (modified)
	* trunk/NEMOGCM/NEMO/OPA_SRC/USR (copied)
	* trunk/NEMOGCM/NEMO/OPA_SRC/ZDF/zdf_oce.F90 (modified)
	* trunk/NEMOGCM/NEMO/OPA_SRC/ZDF/zdfbfr.F90 (modified)
	* trunk/NEMOGCM/NEMO/OPA_SRC/ZDF/zdfevd.F90 (modified)
	* trunk/NEMOGCM/NEMO/OPA_SRC/ZDF/zdfgls.F90 (modified)
	* trunk/NEMOGCM/NEMO/OPA_SRC/ZDF/zdfini.F90 (modified)
	* trunk/NEMOGCM/NEMO/OPA_SRC/ZDF/zdfmxl.F90 (modified)
	* trunk/NEMOGCM/NEMO/OPA_SRC/ZDF/zdfqiao.F90 (copied)
	* trunk/NEMOGCM/NEMO/OPA_SRC/ZDF/zdfric.F90 (modified)
	* trunk/NEMOGCM/NEMO/OPA_SRC/lib_fortran.F90 (modified)
	* trunk/NEMOGCM/NEMO/OPA_SRC/nemogcm.F90 (modified)
	* trunk/NEMOGCM/NEMO/OPA_SRC/oce.F90 (modified)
	* trunk/NEMOGCM/NEMO/OPA_SRC/par_oce.F90 (modified)
	* trunk/NEMOGCM/NEMO/OPA_SRC/step.F90 (modified)
	* trunk/NEMOGCM/NEMO/OPA_SRC/step_oce.F90 (modified)
	* trunk/NEMOGCM/NEMO/OPA_SRC/trc_oce.F90 (modified)
	* trunk/NEMOGCM/NEMO/SAO_SRC/nemogcm.F90 (modified)
	* trunk/NEMOGCM/NEMO/SAO_SRC/sao_data.F90 (modified)
	* trunk/NEMOGCM/NEMO/SAO_SRC/sao_intp.F90 (modified)
	* trunk/NEMOGCM/NEMO/SAO_SRC/sao_read.F90 (modified)
	* trunk/NEMOGCM/NEMO/SAS_SRC/daymod.F90 (modified)
	* trunk/NEMOGCM/NEMO/SAS_SRC/diawri.F90 (modified)
	* trunk/NEMOGCM/NEMO/SAS_SRC/nemogcm.F90 (modified)
	* trunk/NEMOGCM/NEMO/SAS_SRC/sbcssm.F90 (modified)
	* trunk/NEMOGCM/NEMO/SAS_SRC/step.F90 (modified)
	* trunk/NEMOGCM/NEMO/TOP_SRC/AGE (copied)
	* trunk/NEMOGCM/NEMO/TOP_SRC/C14 (copied)
	* trunk/NEMOGCM/NEMO/TOP_SRC/C14b (deleted)
	* trunk/NEMOGCM/NEMO/TOP_SRC/CFC/par_cfc.F90 (modified)
	* trunk/NEMOGCM/NEMO/TOP_SRC/CFC/trcice_cfc.F90 (modified)
	* trunk/NEMOGCM/NEMO/TOP_SRC/CFC/trcini_cfc.F90 (modified)
	* trunk/NEMOGCM/NEMO/TOP_SRC/CFC/trcnam_cfc.F90 (modified)
	* trunk/NEMOGCM/NEMO/TOP_SRC/CFC/trcsms_cfc.F90 (modified)
	* trunk/NEMOGCM/NEMO/TOP_SRC/CFC/trcwri_cfc.F90 (modified)
	* trunk/NEMOGCM/NEMO/TOP_SRC/MY_TRC/par_my_trc.F90 (modified)
	* trunk/NEMOGCM/NEMO/TOP_SRC/MY_TRC/trcice_my_trc.F90 (modified)
	* trunk/NEMOGCM/NEMO/TOP_SRC/MY_TRC/trcini_my_trc.F90 (modified)
	* trunk/NEMOGCM/NEMO/TOP_SRC/MY_TRC/trcnam_my_trc.F90 (modified)
	* trunk/NEMOGCM/NEMO/TOP_SRC/MY_TRC/trcsms_my_trc.F90 (modified)
	* trunk/NEMOGCM/NEMO/TOP_SRC/MY_TRC/trcwri_my_trc.F90 (modified)
	* trunk/NEMOGCM/NEMO/TOP_SRC/PISCES/P2Z/p2zbio.F90 (modified)
	* trunk/NEMOGCM/NEMO/TOP_SRC/PISCES/P2Z/p2zexp.F90 (modified)
	* trunk/NEMOGCM/NEMO/TOP_SRC/PISCES/P2Z/p2zopt.F90 (modified)
	* trunk/NEMOGCM/NEMO/TOP_SRC/PISCES/P2Z/p2zsed.F90 (modified)
	* trunk/NEMOGCM/NEMO/TOP_SRC/PISCES/P2Z/p2zsms.F90 (modified)
	* trunk/NEMOGCM/NEMO/TOP_SRC/PISCES/P4Z/p4zagg.F90 (copied)
	* trunk/NEMOGCM/NEMO/TOP_SRC/PISCES/P4Z/p4zbio.F90 (modified)
	* trunk/NEMOGCM/NEMO/TOP_SRC/PISCES/P4Z/p4zche.F90 (modified)
	* trunk/NEMOGCM/NEMO/TOP_SRC/PISCES/P4Z/p4zfechem.F90 (modified)
	* trunk/NEMOGCM/NEMO/TOP_SRC/PISCES/P4Z/p4zflx.F90 (modified)
	* trunk/NEMOGCM/NEMO/TOP_SRC/PISCES/P4Z/p4zint.F90 (modified)
	* trunk/NEMOGCM/NEMO/TOP_SRC/PISCES/P4Z/p4zligand.F90 (copied)
	* trunk/NEMOGCM/NEMO/TOP_SRC/PISCES/P4Z/p4zlim.F90 (modified)
	* trunk/NEMOGCM/NEMO/TOP_SRC/PISCES/P4Z/p4zlys.F90 (modified)
	* trunk/NEMOGCM/NEMO/TOP_SRC/PISCES/P4Z/p4zmeso.F90 (modified)
	* trunk/NEMOGCM/NEMO/TOP_SRC/PISCES/P4Z/p4zmicro.F90 (modified)
	* trunk/NEMOGCM/NEMO/TOP_SRC/PISCES/P4Z/p4zmort.F90 (modified)
	* trunk/NEMOGCM/NEMO/TOP_SRC/PISCES/P4Z/p4zopt.F90 (modified)
	* trunk/NEMOGCM/NEMO/TOP_SRC/PISCES/P4Z/p4zpoc.F90 (copied)
	* trunk/NEMOGCM/NEMO/TOP_SRC/PISCES/P4Z/p4zprod.F90 (modified)
	* trunk/NEMOGCM/NEMO/TOP_SRC/PISCES/P4Z/p4zrem.F90 (modified)
	* trunk/NEMOGCM/NEMO/TOP_SRC/PISCES/P4Z/p4zsbc.F90 (modified)
	* trunk/NEMOGCM/NEMO/TOP_SRC/PISCES/P4Z/p4zsed.F90 (modified)
	* trunk/NEMOGCM/NEMO/TOP_SRC/PISCES/P4Z/p4zsink.F90 (modified)
	* trunk/NEMOGCM/NEMO/TOP_SRC/PISCES/P4Z/p4zsms.F90 (modified)
	* trunk/NEMOGCM/NEMO/TOP_SRC/PISCES/P4Z/p5zlim.F90 (copied)
	* trunk/NEMOGCM/NEMO/TOP_SRC/PISCES/P4Z/p5zmeso.F90 (copied)
	* trunk/NEMOGCM/NEMO/TOP_SRC/PISCES/P4Z/p5zmicro.F90 (copied)
	* trunk/NEMOGCM/NEMO/TOP_SRC/PISCES/P4Z/p5zmort.F90 (copied)
	* trunk/NEMOGCM/NEMO/TOP_SRC/PISCES/P4Z/p5zprod.F90 (copied)
	* trunk/NEMOGCM/NEMO/TOP_SRC/PISCES/SED/par_sed.F90 (modified)
	* trunk/NEMOGCM/NEMO/TOP_SRC/PISCES/SED/sed.F90 (modified)
	* trunk/NEMOGCM/NEMO/TOP_SRC/PISCES/SED/seddta.F90 (modified)
	* trunk/NEMOGCM/NEMO/TOP_SRC/PISCES/SED/sedmodel.F90 (modified)
	* trunk/NEMOGCM/NEMO/TOP_SRC/PISCES/par_pisces.F90 (modified)
	* trunk/NEMOGCM/NEMO/TOP_SRC/PISCES/sms_pisces.F90 (modified)
	* trunk/NEMOGCM/NEMO/TOP_SRC/PISCES/trcice_pisces.F90 (modified)
	* trunk/NEMOGCM/NEMO/TOP_SRC/PISCES/trcini_pisces.F90 (modified)
	* trunk/NEMOGCM/NEMO/TOP_SRC/PISCES/trcnam_pisces.F90 (modified)
	* trunk/NEMOGCM/NEMO/TOP_SRC/PISCES/trcsms_pisces.F90 (modified)
	* trunk/NEMOGCM/NEMO/TOP_SRC/PISCES/trcwri_pisces.F90 (modified)
	* trunk/NEMOGCM/NEMO/TOP_SRC/TRP/trcadv.F90 (modified)
	* trunk/NEMOGCM/NEMO/TOP_SRC/TRP/trcbbl.F90 (modified)
	* trunk/NEMOGCM/NEMO/TOP_SRC/TRP/trcdmp.F90 (modified)
	* trunk/NEMOGCM/NEMO/TOP_SRC/TRP/trcnxt.F90 (modified)
	* trunk/NEMOGCM/NEMO/TOP_SRC/TRP/trcrad.F90 (modified)
	* trunk/NEMOGCM/NEMO/TOP_SRC/TRP/trcsbc.F90 (modified)
	* trunk/NEMOGCM/NEMO/TOP_SRC/TRP/trctrp.F90 (modified)
	* trunk/NEMOGCM/NEMO/TOP_SRC/TRP/trczdf.F90 (modified)
	* trunk/NEMOGCM/NEMO/TOP_SRC/TRP/trdmxl_trc.F90 (modified)
	* trunk/NEMOGCM/NEMO/TOP_SRC/TRP/trdmxl_trc_rst.F90 (modified)
	* trunk/NEMOGCM/NEMO/TOP_SRC/TRP/trdtrc_oce.F90 (modified)
	* trunk/NEMOGCM/NEMO/TOP_SRC/oce_trc.F90 (modified)
	* trunk/NEMOGCM/NEMO/TOP_SRC/par_trc.F90 (modified)
	* trunk/NEMOGCM/NEMO/TOP_SRC/prtctl_trc.F90 (modified)
	* trunk/NEMOGCM/NEMO/TOP_SRC/trc.F90 (modified)
	* trunk/NEMOGCM/NEMO/TOP_SRC/trcbc.F90 (modified)
	* trunk/NEMOGCM/NEMO/TOP_SRC/trcbdy.F90 (modified)
	* trunk/NEMOGCM/NEMO/TOP_SRC/trcdia.F90 (deleted)
	* trunk/NEMOGCM/NEMO/TOP_SRC/trcdta.F90 (modified)
	* trunk/NEMOGCM/NEMO/TOP_SRC/trcice.F90 (modified)
	* trunk/NEMOGCM/NEMO/TOP_SRC/trcini.F90 (modified)
	* trunk/NEMOGCM/NEMO/TOP_SRC/trcnam.F90 (modified)
	* trunk/NEMOGCM/NEMO/TOP_SRC/trcrst.F90 (modified)
	* trunk/NEMOGCM/NEMO/TOP_SRC/trcsms.F90 (modified)
	* trunk/NEMOGCM/NEMO/TOP_SRC/trcstp.F90 (modified)
	* trunk/NEMOGCM/NEMO/TOP_SRC/trcsub.F90 (modified)
	* trunk/NEMOGCM/NEMO/TOP_SRC/trcwri.F90 (modified)
	* trunk/NEMOGCM/SETTE/BATCH_TEMPLATE/batch-X64_ADA_DEBUG (copied)
	* trunk/NEMOGCM/SETTE/BATCH_TEMPLATE/batch-X64_MOBILIS (modified)
	* trunk/NEMOGCM/SETTE/BATCH_TEMPLATE/batch-ifort_athena (modified)
	* trunk/NEMOGCM/SETTE/BATCH_TEMPLATE/batch-ifort_athena_xios (modified)
	* trunk/NEMOGCM/SETTE/BATCH_TEMPLATE/batch-macport_osx_debug (copied)
	* trunk/NEMOGCM/SETTE/README (modified)
	* trunk/NEMOGCM/SETTE/all_functions.sh (modified)
	* trunk/NEMOGCM/SETTE/input_AMM12.cfg (modified)
	* trunk/NEMOGCM/SETTE/input_ISOMIP.cfg (modified)
	* trunk/NEMOGCM/SETTE/input_ORCA2_LIM3.cfg (modified)
	* trunk/NEMOGCM/SETTE/input_ORCA2_LIM3_AGRIF.cfg (copied)
	* trunk/NEMOGCM/SETTE/input_ORCA2_LIM3_OBS.cfg (copied)
	* trunk/NEMOGCM/SETTE/input_ORCA2_LIM3_PISCES.cfg (copied)
	* trunk/NEMOGCM/SETTE/input_ORCA2_LIM_AGRIF.cfg (copied)
	* trunk/NEMOGCM/SETTE/input_ORCA2_LIM_OBS.cfg (deleted)
	* trunk/NEMOGCM/SETTE/input_ORCA2_LIM_PISCES.cfg (deleted)
	* trunk/NEMOGCM/SETTE/input_ORCA2_OFF_PISCES.cfg (modified)
	* trunk/NEMOGCM/SETTE/input_SAS.cfg (modified)
	* trunk/NEMOGCM/SETTE/iodef_sette.xml (modified)
	* trunk/NEMOGCM/SETTE/param.cfg (modified)
	* trunk/NEMOGCM/SETTE/prepare_exe_dir.sh (modified)
	* trunk/NEMOGCM/SETTE/sette.sh (modified)
	* trunk/NEMOGCM/SETTE/sette_rpt (modified)
	* trunk/NEMOGCM/SETTE/sette_rpt.sh (modified)
	* trunk/NEMOGCM/TOOLS/COMPILE/Fadd_keys.sh (modified)
	* trunk/NEMOGCM/TOOLS/COMPILE/Fcheck_archfile.sh (modified)
	* trunk/NEMOGCM/TOOLS/COMPILE/Fmake_config.sh (modified)
	* trunk/NEMOGCM/TOOLS/COMPILE/Fmake_extconfig.sh (modified)
	* trunk/NEMOGCM/TOOLS/COMPILE/bld_tools.cfg (modified)
	* trunk/NEMOGCM/TOOLS/COMPILE/tools.txt (modified)
	* trunk/NEMOGCM/TOOLS/DOMAINcfg (copied)
	* trunk/NEMOGCM/TOOLS/SIREN/Doxyfile (copied)
	* trunk/NEMOGCM/TOOLS/SIREN/README (modified)
	* trunk/NEMOGCM/TOOLS/SIREN/cfg/dimension.cfg (copied)
	* trunk/NEMOGCM/TOOLS/SIREN/cfg/dummy.cfg (modified)
	* trunk/NEMOGCM/TOOLS/SIREN/cfg/variable.cfg (modified)
	* trunk/NEMOGCM/TOOLS/SIREN/doc/refman.pdf (copied)
	* trunk/NEMOGCM/TOOLS/SIREN/src/Doxyfile (deleted)
	* trunk/NEMOGCM/TOOLS/SIREN/src/attribute.f90 (modified)
	* trunk/NEMOGCM/TOOLS/SIREN/src/boundary.f90 (modified)
	* trunk/NEMOGCM/TOOLS/SIREN/src/create_bathy.f90 (modified)
	* trunk/NEMOGCM/TOOLS/SIREN/src/create_boundary.F90 (modified)
	* trunk/NEMOGCM/TOOLS/SIREN/src/create_coord.f90 (modified)
	* trunk/NEMOGCM/TOOLS/SIREN/src/create_meshmask.f90 (copied)
	* trunk/NEMOGCM/TOOLS/SIREN/src/create_restart.f90 (modified)
	* trunk/NEMOGCM/TOOLS/SIREN/src/dimension.f90 (modified)
	* trunk/NEMOGCM/TOOLS/SIREN/src/docsrc/1_install.md (modified)
	* trunk/NEMOGCM/TOOLS/SIREN/src/docsrc/2_quickstart.md (modified)
	* trunk/NEMOGCM/TOOLS/SIREN/src/docsrc/3_support_bug.md (modified)
	* trunk/NEMOGCM/TOOLS/SIREN/src/docsrc/4_codingRules.md (modified)
	* trunk/NEMOGCM/TOOLS/SIREN/src/docsrc/5_changeLog.md (modified)
	* trunk/NEMOGCM/TOOLS/SIREN/src/docsrc/6_perio.md (modified)
	* trunk/NEMOGCM/TOOLS/SIREN/src/docsrc/main.dox (modified)
	* trunk/NEMOGCM/TOOLS/SIREN/src/global.f90 (modified)
	* trunk/NEMOGCM/TOOLS/SIREN/src/grid.f90 (modified)
	* trunk/NEMOGCM/TOOLS/SIREN/src/grid_hgr.f90 (copied)
	* trunk/NEMOGCM/TOOLS/SIREN/src/grid_zgr.f90 (copied)
	* trunk/NEMOGCM/TOOLS/SIREN/src/iom.f90 (modified)
	* trunk/NEMOGCM/TOOLS/SIREN/src/iom_cdf.f90 (modified)
	* trunk/NEMOGCM/TOOLS/SIREN/src/lbc.f90 (copied)
	* trunk/NEMOGCM/TOOLS/SIREN/src/merge_bathy.f90 (modified)
	* trunk/NEMOGCM/TOOLS/SIREN/src/mpp.f90 (modified)
	* trunk/NEMOGCM/TOOLS/SIREN/src/phycst.f90 (modified)
	* trunk/NEMOGCM/TOOLS/SIREN/src/variable.f90 (modified)
	* trunk/NEMOGCM/TOOLS/SIREN/src/vgrid.f90 (modified)
	* trunk/NEMOGCM/TOOLS/SIREN/templates/create_meshmask.nam (copied)
	* trunk/NEMOGCM/TOOLS/SIREN/templates/merge_bathy.nam (modified)
	* trunk/NEMOGCM/TRUST/inputs/AMM12/namelist_cfg (modified)
	* trunk/NEMOGCM/TRUST/inputs/GYRE/namelist_cfg (modified)
	* trunk/NEMOGCM/fcm-make/inc/keys-amm12.cfg (modified)

	Merge of dev_merge_2016 into trunk. UPDATE TO ARCHFILES NEEDED for ...


