# # ChangeLog for branches/UKMO/dev_r5518_medusa_chg_trc_bio_medusa # # Generated by Trac 1.0.1 # 2024-05-10T00:05:26+02:00 Fri, 26 May 2017 08:17:21 GMT marc [8076] * branches/UKMO/dev_r5518_medusa_chg_trc_bio_medusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_medusa_diag_slice.F90 (modified) * branches/UKMO/dev_r5518_medusa_chg_trc_bio_medusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_medusa_fin.F90 (modified) * branches/UKMO/dev_r5518_medusa_chg_trc_bio_medusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_medusa_init.F90 (modified) * branches/UKMO/dev_r5518_medusa_chg_trc_bio_medusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_medusa_mod.F90 (modified) * branches/UKMO/dev_r5518_medusa_chg_trc_bio_medusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/detritus.F90 (modified) * branches/UKMO/dev_r5518_medusa_chg_trc_bio_medusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/zooplankton.F90 (modified) Removed wrk_alloc and wrk_dealloc from bio_medusa_* routines Wed, 24 May 2017 08:03:18 GMT marc [8062] * branches/UKMO/dev_r5518_medusa_chg_trc_bio_medusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_med_diag_iomput.F90 (modified) * branches/UKMO/dev_r5518_medusa_chg_trc_bio_medusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_med_diag_trc.F90 (modified) * branches/UKMO/dev_r5518_medusa_chg_trc_bio_medusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_medusa_diag.F90 (modified) * branches/UKMO/dev_r5518_medusa_chg_trc_bio_medusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/detritus_fast_sink.F90 (modified) * branches/UKMO/dev_r5518_medusa_chg_trc_bio_medusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/iron_chem_scav.F90 (modified) * branches/UKMO/dev_r5518_medusa_chg_trc_bio_medusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/phytoplankton.F90 (modified) * branches/UKMO/dev_r5518_medusa_chg_trc_bio_medusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/plankton.F90 (modified) * branches/UKMO/dev_r5518_medusa_chg_trc_bio_medusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcbio_medusa.F90 (modified) * branches/UKMO/dev_r5518_medusa_chg_trc_bio_medusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/zooplankton.F90 (modified) Fixes to do with tmask(ji,jj,1) and mbathy(ji,jj) outside DO loop Fri, 19 May 2017 14:00:01 GMT marc [8051] * branches/UKMO/dev_r5518_medusa_chg_trc_bio_medusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_med_diag_trc.F90 (modified) * branches/UKMO/dev_r5518_medusa_chg_trc_bio_medusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_medusa_mod.F90 (modified) * branches/UKMO/dev_r5518_medusa_chg_trc_bio_medusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcbio_medusa.F90 (modified) * branches/UKMO/dev_r5518_medusa_chg_trc_bio_medusa/NEMOGCM/NEMO/TOP_SRC/trcsms.F90 (modified) Tidying up a few bits Fri, 19 May 2017 09:21:44 GMT marc [8045] * branches/UKMO/dev_r5518_medusa_chg_trc_bio_medusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_medusa_init.F90 (modified) * branches/UKMO/dev_r5518_medusa_chg_trc_bio_medusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/iron_chem_scav.F90 (modified) * branches/UKMO/dev_r5518_medusa_chg_trc_bio_medusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcsms_medusa.F90 (modified) Broken up iron_chem_scav.F90 into sections Thu, 18 May 2017 09:14:31 GMT marc [8039] * branches/UKMO/dev_r5518_medusa_chg_trc_bio_medusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/air_sea.F90 (modified) * branches/UKMO/dev_r5518_medusa_chg_trc_bio_medusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_medusa_mod.F90 (modified) * branches/UKMO/dev_r5518_medusa_chg_trc_bio_medusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/carb_chem.F90 (modified) * branches/UKMO/dev_r5518_medusa_chg_trc_bio_medusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/detritus_fast_sink.F90 (modified) * branches/UKMO/dev_r5518_medusa_chg_trc_bio_medusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/phytoplankton.F90 (modified) * branches/UKMO/dev_r5518_medusa_chg_trc_bio_medusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/zooplankton.F90 (modified) Removed about 40 2d arrays from bio_medusa_mod.F90 Fri, 12 May 2017 13:34:58 GMT marc [8025] * branches/UKMO/dev_r5518_medusa_chg_trc_bio_medusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_med_diag_iomput.F90 (added) * branches/UKMO/dev_r5518_medusa_chg_trc_bio_medusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_med_diag_trc.F90 (added) * branches/UKMO/dev_r5518_medusa_chg_trc_bio_medusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_medusa_diag.F90 (modified) * branches/UKMO/dev_r5518_medusa_chg_trc_bio_medusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcbio_medusa.F90 (modified) Split diagnostics in bio_medusa_diag.F90 across two other files Fri, 12 May 2017 08:21:30 GMT marc [8023] * branches/UKMO/dev_r5518_medusa_chg_trc_bio_medusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/air_sea.F90 (modified) * branches/UKMO/dev_r5518_medusa_chg_trc_bio_medusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_medusa_diag.F90 (modified) * branches/UKMO/dev_r5518_medusa_chg_trc_bio_medusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_medusa_diag_slice.F90 (modified) * branches/UKMO/dev_r5518_medusa_chg_trc_bio_medusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_medusa_fin.F90 (modified) * branches/UKMO/dev_r5518_medusa_chg_trc_bio_medusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_medusa_init.F90 (modified) * branches/UKMO/dev_r5518_medusa_chg_trc_bio_medusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_medusa_mod.F90 (modified) * branches/UKMO/dev_r5518_medusa_chg_trc_bio_medusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_medusa_update.F90 (modified) * branches/UKMO/dev_r5518_medusa_chg_trc_bio_medusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/carb_chem.F90 (modified) * branches/UKMO/dev_r5518_medusa_chg_trc_bio_medusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/detritus.F90 (modified) * branches/UKMO/dev_r5518_medusa_chg_trc_bio_medusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/detritus_fast_sink.F90 (modified) * branches/UKMO/dev_r5518_medusa_chg_trc_bio_medusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcbio_medusa.F90 (modified) Tidying up of headers for several files Wed, 10 May 2017 07:47:35 GMT marc [8012] * branches/UKMO/dev_r5518_medusa_chg_trc_bio_medusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_medusa_diag.F90 (modified) * branches/UKMO/dev_r5518_medusa_chg_trc_bio_medusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_medusa_mod.F90 (modified) * branches/UKMO/dev_r5518_medusa_chg_trc_bio_medusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/detritus_fast_sink.F90 (modified) * branches/UKMO/dev_r5518_medusa_chg_trc_bio_medusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/plankton.F90 (modified) * branches/UKMO/dev_r5518_medusa_chg_trc_bio_medusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcbio_medusa.F90 (modified) Pulled further code from trcbio_medusa.F90 into other files Mon, 08 May 2017 10:16:27 GMT marc [7998] * branches/UKMO/dev_r5518_medusa_chg_trc_bio_medusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_medusa_diag.F90 (added) * branches/UKMO/dev_r5518_medusa_chg_trc_bio_medusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcbio_medusa.F90 (modified) Pull out diagnostic calculations from trcbio_medusa.F90 Fri, 05 May 2017 10:09:58 GMT marc [7996] * branches/UKMO/dev_r5518_medusa_chg_trc_bio_medusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_medusa_mod.F90 (modified) * branches/UKMO/dev_r5518_medusa_chg_trc_bio_medusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_medusa_update.F90 (added) * branches/UKMO/dev_r5518_medusa_chg_trc_bio_medusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcbio_medusa.F90 (modified) Pulled the updating of tracers out of trcbio_medusa.F90 Fri, 28 Apr 2017 15:21:58 GMT marc [7986] * branches/UKMO/dev_r5518_medusa_chg_trc_bio_medusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/air_sea.F90 (modified) * branches/UKMO/dev_r5518_medusa_chg_trc_bio_medusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_medusa_mod.F90 (modified) * branches/UKMO/dev_r5518_medusa_chg_trc_bio_medusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/detritus.F90 (added) * branches/UKMO/dev_r5518_medusa_chg_trc_bio_medusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/detritus_fast_sink.F90 (added) * branches/UKMO/dev_r5518_medusa_chg_trc_bio_medusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcbio_medusa.F90 (modified) Pulled detritus processes out of trcbio_medusa.F90 Thu, 27 Apr 2017 11:13:32 GMT marc [7978] * branches/UKMO/dev_r5518_medusa_chg_trc_bio_medusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_medusa_mod.F90 (modified) * branches/UKMO/dev_r5518_medusa_chg_trc_bio_medusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/iron_chem_scav.F90 (added) * branches/UKMO/dev_r5518_medusa_chg_trc_bio_medusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcbio_medusa.F90 (modified) Moved the iron chemistry and scavenging out of trcbio_medusa.F90 Wed, 26 Apr 2017 14:30:14 GMT marc [7975] * branches/UKMO/dev_r5518_medusa_chg_trc_bio_medusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/air_sea.F90 (modified) * branches/UKMO/dev_r5518_medusa_chg_trc_bio_medusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_medusa_mod.F90 (modified) * branches/UKMO/dev_r5518_medusa_chg_trc_bio_medusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/carb_chem.F90 (modified) * branches/UKMO/dev_r5518_medusa_chg_trc_bio_medusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/phytoplankton.F90 (added) * branches/UKMO/dev_r5518_medusa_chg_trc_bio_medusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/plankton.F90 (added) * branches/UKMO/dev_r5518_medusa_chg_trc_bio_medusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcbio_medusa.F90 (modified) * branches/UKMO/dev_r5518_medusa_chg_trc_bio_medusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/zooplankton.F90 (added) Removed plankton processes from trcbio_medusa.F90 into extra routines Mon, 24 Apr 2017 11:30:28 GMT marc [7958] * branches/UKMO/dev_r5518_medusa_chg_trc_bio_medusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/air_sea.F90 (added) * branches/UKMO/dev_r5518_medusa_chg_trc_bio_medusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_medusa_mod.F90 (modified) * branches/UKMO/dev_r5518_medusa_chg_trc_bio_medusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/carb_chem.F90 (modified) * branches/UKMO/dev_r5518_medusa_chg_trc_bio_medusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcbio_medusa.F90 (modified) Pulled air-sea gas exchange and river inputs from trcbio_medusa.F90 into ... Thu, 20 Apr 2017 11:04:56 GMT marc [7938] * branches/UKMO/dev_r5518_medusa_chg_trc_bio_medusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_medusa_mod.F90 (modified) * branches/UKMO/dev_r5518_medusa_chg_trc_bio_medusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/carb_chem.F90 (added) * branches/UKMO/dev_r5518_medusa_chg_trc_bio_medusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcbio_medusa.F90 (modified) Carbon chemistry has been pulled out of trcbio_medusa.F90 into ... Tue, 18 Apr 2017 15:47:38 GMT marc [7927] * branches/UKMO/dev_r5518_medusa_chg_trc_bio_medusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_medusa_diag_slice.F90 (added) * branches/UKMO/dev_r5518_medusa_chg_trc_bio_medusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_medusa_mod.F90 (modified) * branches/UKMO/dev_r5518_medusa_chg_trc_bio_medusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcbio_medusa.F90 (modified) Moving the diagnostics at end of the big DO loop in trcbio_medusa.F90 ... Tue, 18 Apr 2017 10:49:13 GMT marc [7920] * branches/UKMO/dev_r5518_medusa_chg_trc_bio_medusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_medusa_fin.F90 (added) * branches/UKMO/dev_r5518_medusa_chg_trc_bio_medusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcbio_medusa.F90 (modified) Removing the finalisation of diagnostics from trcbio_medusa.F90 into ... Thu, 13 Apr 2017 16:05:31 GMT marc [7912] * branches/UKMO/dev_r5518_medusa_chg_trc_bio_medusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_medusa_init.F90 (added) * branches/UKMO/dev_r5518_medusa_chg_trc_bio_medusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/bio_medusa_mod.F90 (added) * branches/UKMO/dev_r5518_medusa_chg_trc_bio_medusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcbio_medusa.F90 (modified) * branches/UKMO/dev_r5518_medusa_chg_trc_bio_medusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcsms_medusa.F90 (modified) * branches/UKMO/dev_r5518_medusa_chg_trc_bio_medusa/NEMOGCM/NEMO/TOP_SRC/trcini.F90 (modified) * branches/UKMO/dev_r5518_medusa_chg_trc_bio_medusa/NEMOGCM/NEMO/TOP_SRC/trcsms.F90 (modified) Moved initialisation from trcbio_medusa.F90 into bio_medusa_init.F90 Mon, 10 Apr 2017 15:01:50 GMT marc [7886] * branches/UKMO/dev_r5518_medusa_chg_trc_bio_medusa/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcbio_medusa.F90 (modified) Changing many of the scalars to 2d arrays in prepartion for implementing ... Mon, 10 Apr 2017 09:14:34 GMT marc [7883] * branches/UKMO/dev_r5518_medusa_chg_trc_bio_medusa (copied) Create branch of MEDUSA to break up trcbio_medusa.F90 into manageable ... Thu, 06 Apr 2017 10:59:22 GMT marc [7880] * branches/NERC/dev_r5518_NOC_MEDUSA_Stable/NEMOGCM/NEMO/TOP_SRC/MEDUSA/trcbio_medusa.F90 (modified) Marc 6/4/17. Fix bug where flatx is not set in call to mocsy_interface