Opened 8 years ago

Closed 8 years ago

#950 closed Bug (fixed)

test run for ORCA2_LIM_PISCES CONFIGURATION

Reported by: liuzhuo Owned by: nemo
Priority: low Milestone:
Component: OCE Version: release-3.4
Severity: Keywords:
Cc:

Description

Dear Sir/Madam?,I am a brand new user about NEMO.We shall use NEMO to do the research on arctic ocean.I have registered as user liuzhuo with this email address.I have a question about configuration/running NEMO.
My computer is Mac Pro desktop, the osx is Lion 10.7.3.The Xcode version is 4.3, the fortran compiler is gfortran—mp-4.5I also installed openmpi and netcdf4.1.3. I downloaded NEMO and installed by:{{{
svn —username "my_login" co http://forge.ipsl.jussieu.fr/nemo/svn/tags/nemo_v3_4/NEMOGCM
}}}
To compile the model, I copied the file arch-gfortran_osx.fcm under NEMOGCM/ARCH, to arch-mpif90_pnetcdf_osx.fcm, changed fortrancompiler name to mpif90, and netcdf include file and library.Please see the attachment "arch-mpif90_pnetcdf_osx.fcm"Then I compiled it bycd NEMOGCM/CONFIG; ./makenemo –m mpif90_pnetcdf_osx–r GYRE -n MY_GYRE,The compilation is successful, and I can run ops under NEMOGCM/CONFIG/MY_GYRE/EXP00, it run normally.Now I move into the folder NEMOGCM/SETTE, try to execute sette.sh. There are 9 tests, I have passed the test for GYRE_LOBSTER CONFIGURATION, i.e., ${config} -eq 1 and ${config} -eq 2, but I failed to test for ORCA2_LIM_PISCES CONFIGURATION. For ${conbbfig} -eq 3, I executed sette.sh mpif90_pnetcdf_osx 3 | & tee res.mpif90_pnetcdf_osx.3, there is a error message "mpiexec noticed that process rank 0 with PID 89539 on node dyn-tp-060.cc.umanitoba.ca exited on signal 11 (Segmentation fault: 11)", see attached "res.mpif90_pnetcdf_osx.3".I also attach the ocean.output in the directory NEMO_VALIDATION, in the …/SHORT/ocean.output, it says "3 error have been found".For the ${conbbfig} -eq 4, the execution seems cannot continue to run, I have to stop it. Could you help me to figure out the problem?Your help is highly appreciated.Merci beaucoup.Have a nice day.

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Attachments (7)

attachment.tar (520.0 KB) - added by liuzhuo 8 years ago.
arch-mpif90_pnetcdf_osx.fcm (1.5 KB) - added by liuzhuo 8 years ago.
sette.sh (21.9 KB) - added by liuzhuo 8 years ago.
res.mpif90_pnetcdf_osx.3 (286.5 KB) - added by liuzhuo 8 years ago.
output.sette.mpif90_pnetcdf_osx.3 (7.5 KB) - added by liuzhuo 8 years ago.
LONG_ocean.output (108.3 KB) - added by liuzhuo 8 years ago.
SHORT_ocean.output (86.0 KB) - added by liuzhuo 8 years ago.

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Change History (8)

Changed 8 years ago by liuzhuo

Changed 8 years ago by liuzhuo

Changed 8 years ago by liuzhuo

Changed 8 years ago by liuzhuo

Changed 8 years ago by liuzhuo

Changed 8 years ago by liuzhuo

Changed 8 years ago by liuzhuo

comment:1 Changed 8 years ago by clevy

  • Resolution set to fixed
  • Status changed from new to closed
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