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2018-05-25:

17:43 Changeset [9648] by Pierre Mathiot

METO: old branch no more used; rm branch

17:39 Changeset [9647] by Pierre Mathiot

METO: old branch no more used; rm branch

17:38 Changeset [9646] by Pierre Mathiot

METO: old branch no more used; rm branch

17:36 Changeset [9645] by Pierre Mathiot

old branch no more used; rm branch

17:34 Changeset [9644] by Pierre Mathiot

old branch no more used; rm branch

17:32 Changeset [9643] by Pierre Mathiot

old branch no more used; rm branch

17:31 Changeset [9642] by Pierre Mathiot

old branch no more used; rm branch

17:20 Changeset [9641] by Pierre Mathiot

un-used branch; rm branch

17:18 Changeset [9640] by Pierre Mathiot

un-used branch; rm branch

17:15 Changeset [9639] by Pierre Mathiot

Fix included in GO6 package branch; rm branch

17:11 Changeset [9638] by Pierre Mathiot

Fix included in GO6 package branch; rm branch

17:10 Changeset [9637] by Pierre Mathiot

Fix included in GO6 package branch

15:15 Changeset [9636] by Nicolas MARTIN

Partial revert of previous commit on svn:ignore property of ./cfgs: put back *_ST to skip sette generated configurations

15:07 Changeset [9635] by Nicolas MARTIN

Reorganisation plan for NEMO repository: reinstate test cases in the trunk under './tests' root folder
In order to be clear, the development of the test cases is back to the trunk but the official hub for
the NEMO demonstration cases will be on Github (https://github.com/sflavoni/NEMO-test-cases)
As a result, when we will set the new release, 'tests' will be emptied and
the last developements will be copied to the Github repository.

Other changes:

  • README-setup-configs edited for path changes and moved to the root
  • cfg.txt renamed to ref_cfgs.txt
  • uspcfg.txt renamed to rmt_cfgs.txt ('rmt' for remote) and moved to ./tests
  • makenemo will create new configuration using work_cfgs.txt file, this file will be ignored by SVN thanks to svn:ignore property set
14:32 Changeset [9634] by Julien Palmieri

pass the SSS under ice relaxation term through the namelist

14:12 Changeset [9633] by Nicolas MARTIN

Reorganisation plan for NEMO repository: create new location for the developement branches

12:23 Changeset [9632] by Jerome Chanut

Correct child velocity points lat/lon interpolation, #2082

10:14 Changeset [9631] by Dave Storkey

Bug fix in nemo2cice in sbcice_cice.F90.

2018-05-24:

20:50 Changeset [9630] by Antony Siahaan

Code for divergence correction

11:39 Changeset [9629] by James Harle

Inserted missing code for bdy interp, #2088.

11:16 Changeset [9628] by Jerome Chanut

Remove bathymetry connection if open boundary is closed, #2089

2018-05-23:

21:55 Changeset [9627] by Nicolas MARTIN

Reorganisation plan for NEMO repository: remove svn:externals property set by mistake

21:50 Changeset [9626] by Nicolas MARTIN

Reorganisation plan for NEMO repository: set svn:ignore property to the right folder

21:34 Changeset [9625] by Nicolas MARTIN

Reorganisation plan for NEMO repository: set svn:ignore property to ./doc to skip files generated by LaTeX to build the PDF version of the documentation

19:40 Changeset [9624] by Antony Siahaan

Create a branch for divergence correction in the remeshing of isf cavity

2018-05-22:

19:03 Changeset [9623] by Nicolas MARTIN

Reorganisation plan for NEMO repository: adjust external definition for makenemo to the root of the source code
Add svn:ignore property on cfgs folder for all testing configurations created by sette ('*_ST')

16:48 Changeset [9622] by Nicolas MARTIN

Reorganisation plan for NEMO repository: revert the last commit to define operative externals definitions and add AGRIF dev branch
Can't work on versioned sub-directories and can't use wildcard in SVN ext. properties so the definitions will be done on the trunk folder and the shareable directories ('arch'/'mk'/'tools') will not appear under Trac browser

16:13 Changeset [9621] by Nicolas MARTIN

Reorganisation plan for NEMO repository: implementation of SVN externals definitions by extracting shareable directories from 'trunk' to 'utils' or 'vendors'

  • Move the location of 'makenemo' to /utils/build/mk because it is united with the compilation scripts
  • Move 'arch' and 'mk' to '/utils/build'
  • Move 'tools' to '/utils/tools'
  • Move dependencies to '/vendors' i.e. AGRIF, FCM & IOIPSL
15:23 Changeset [9620] by Nicolas MARTIN

Reorganisation plan for NEMO repository: delection of all DOC figures for 2018 dev. branches

15:22 Changeset [9619] by Nicolas MARTIN

Reorganisation plan for NEMO repository: delection of all DOC figures for 2017 dev. branches

15:18 Changeset [9618] by Nicolas MARTIN

Reorganisation plan for NEMO repository: remove remaining figures in CNRS dev. branches

15:07 Changeset [9617] by Nicolas MARTIN

Reorganisation plan for NEMO repository: delection of all DOC figures for CNRS dev. branches

11:09 Changeset [9616] by Mirek Andrejczuk

#2001 few additionale changes

10:41 Changeset [9615] by Richard Hill

Correct U mask footprint and remove N-fold specific masking on
T points in out new 3d T mask.

2018-05-21:

11:29 Changeset [9614] by Richard Hill

Create 3D U and V interior masks to mask out wrap columns
and 1st and last rows. Apply to appropriate grids
at dfinition phase.

11:29 Changeset [9613] by Tomas Lovato

trunk : redo bugfix of CFC gas transfer velocity and add CDIAC forcing file (#2065)

2018-05-18:

17:00 Changeset [9612] by Clement Rousset

put mpirun by default (instead of poe) to force the use of intel2017 otherwise agrif does not work and they are issues with repro/restart

16:46 Changeset [9611] by Clement Rousset

complete(debug) the last commit

16:29 Changeset [9610] by Clement Rousset

replace names of the agrif subroutines from si3 to ice

12:00 Changeset [9609] by Clement Rousset

debug sette.sh

11:52 Changeset [9608] by Richard Hill

Introduce and apply a 3D interior mask for T, U, V and W grid diagnostics.

11:47 Changeset [9607] by Richard Hill

Changes to ensure diagnostics bit compare on different
PE decompositions w/o littering the code with expensive
lbc_lnk calls.

10:31 Changeset [9606] by Clement Rousset

change a directory for test cases

10:13 Changeset [9605] by Clement Rousset

change some names to comply with the new architecture

09:53 Changeset [9604] by Clement Rousset

change history of the ice routines

2018-05-16:

12:48 Changeset [9603] by Nicolas MARTIN

Restore cfg.txt to be consistent with the reference configurations list

12:26 Changeset [9602] by Nicolas MARTIN

Changes to comply with the new structure of the trunk

11:13 Changeset [9601] by Clement Rousset

change agulhas namelist by nordic namelists for agrif nesting

09:39 Changeset [9600] by James Harle

Correction for missing code handling bdytmask (see ticket #2084)

00:52 Changeset [9599] by Nicolas MARTIN

Fix last broken symlink

00:47 Changeset [9598] by Nicolas MARTIN

Reorganisation plan for NEMO repository: changes to make compilation succeed with new structure
Juste one issue left with AGRIF_NORDIC with AGRIF preprocessing
Standardisation of routines header with version 4.0 and year 2018
Fix for some broken symlinks

2018-05-15:

20:07 Changeset [9597] by Nicolas MARTIN

Reorganisation plan for NEMO repository: deletion of remaining items in /vendors
For unknown reason, some folders were still in the repository whereas not downloaded with svn checkout.
Use SVN delete command on the URLs, nothing can be done from a working copy

17:51 Changeset [9596] by Nicolas MARTIN

Reorganisation plan for NEMO repository: preliminary implementation of the new trunk structure (ref #2015)

  • Deletion of useless 1st level, add new explicit names for folders
  • Extract dev tools (SETTE and Trusting) to /utils/CI
  • Extract figures folder from documentation to /utils/figures
  • Extrac TEST_CASES to /utils/test_cases
  • Move ./TOOLS/COMPILE to ./mk
  • Add few wiki files at the root: README, INSTALL and LICENSE with full text of CeCILL v2.0
  • Style: uppercase for wiki files, lowercase for folder names

Additionally, inclusion of routines renaming in NST: agrif_si3 → agrif_ice

17:00 Changeset [9595] by Nicolas MARTIN

Reorganisation plan for NEMO repository: move remaining dev branch to the right place

15:52 Changeset [9594] by Nicolas MARTIN

Reorganisation plan for NEMO repository: partial implementation of the new layout

  • NEMO
    • branches
    • releases
    • trunk
  • utils
    • build
    • CI
    • figures
    • test_cases
    • tools
  • vendors
15:00 Changeset [9593] by Nicolas MARTIN

Reorganisation plan for NEMO repository:remove orphan dev branch

12:42 Changeset [9592] by Nicolas MARTIN

Reorganisation plan for NEMO repository: deletion of 2016 developments folder

12:40 Changeset [9591] by Nicolas MARTIN

Reorganisation plan for NEMO repository: deletion of 2015 developments folder (except v3.6 release)

12:36 Changeset [9590] by Nicolas MARTIN

Reorganisation plan for NEMO repository: deletion of 2014 developments folder

12:35 Changeset [9589] by Nicolas MARTIN

Reorganisation plan for NEMO repository: deletion of 2013 developments folder

12:33 Changeset [9588] by Nicolas MARTIN

Reorganisation plan for NEMO repository: deletion of 2012 developments folder (except v3.4 release)

12:17 Changeset [9587] by Nicolas MARTIN

Reorganisation plan for NEMO repository: deletion of 2011 developments folder

12:16 Changeset [9586] by Nicolas MARTIN

Reorganisation plan for NEMO repository: deletion of 2010 developments folder

12:11 Changeset [9585] by Nicolas MARTIN

Reorganisation plan for NEMO repository: deletion of /tags root directory with its content

12:08 Changeset [9584] by Nicolas MARTIN

Reorganisation plan for NEMO reposiotry: emptying of obsolete code in /vendors (XIOS and predecessors)

11:50 Changeset [9583] by Richard Hill

Commit Stephen Haddad's
https://forge.ipsl.jussieu.fr/nemo/browser/branches/UKMO/dev_r5518_GO6_package_rigorous_compile_fix
revisions 9549:9582

Met Office GMED ticket 390 refers.

10:50 Changeset [9582] by Stephen Haddad

GMED #390: Added in implicit none missed in previous commit.

2018-05-14:

23:00 Changeset [9581] by Nicolas MARTIN

Erase the trunk with the branch of 2017 developments

22:48 Changeset [9580] by Nicolas MARTIN

Push again float bugfix for #2069 already done on the trunk after the revision was set for MP, the other commit r9401 from Tomas is not going to be propagated

21:18 Changeset [9579] by Nicolas MARTIN

Updating of the forcing archives names to prepare the release of v4.0

15:49 Changeset [9578] by Stephen Haddad

Added implicit none statements to branch.

15:13 Changeset [9577] by Nicolas MARTIN

Global renaming / Cleaning : fix bugged cfg.txt and restore loop in sette.sh, remove obsolete scripts

2018-05-11:

16:50 Changeset [9576] by Nicolas MARTIN

Global renaming for SETTE + fix for key_lim3 in MY_SRC: push remaining modifications in order to start from a clean checkout

14:49 Changeset [9575] by Nicolas MARTIN

Global renaming for reference configurations and test cases (./CONFIG): add new symbolic links, probably not fully operational

14:32 Changeset [9574] by Nicolas MARTIN

Global renaming for fcm-make folder: untested and not sure if it worth the modfiications

14:25 Changeset [9573] by Nicolas MARTIN

Global renaming for compilation scripts (./TOOLS/COMPILE): tools scripts have been modified but not been tested

13:16 Changeset [9572] by Nicolas MARTIN

Global renaming for reference configurations and test cases (./CONFIG): 2 steps for removing symbolic links

  • Folders
    • ORCA2_LIM3_PISCES → ORCA2_SI3_PISCES
    • ORCA2_SAS_LIM3 → ORCA2_SAS_SI3
  • CPP keys: key_lim3 → key_si3
  • Namelists and XML
    • namelist_ice_lim3_ref → namelist_ice_si3_ref
    • file_def_nemo-opa.xml → file_def_nemo-oce.xml, file_def_nemo-lim.xml → file_def_nemo-ice.xml
    • field_def_nemo-opa.xml → field_def_nemo-oce.xml, field_def_nemo-lim.xml → field_def_nemo-ice.xml
    • namp.zlim → namp.zice
  • Cleaning of configurations list in cfg.txt
13:00 Changeset [9571] by Nicolas MARTIN

Global renaming for dependencies (./EXTERNAL): agrif_opa.in → agrif_oce.in in ./AGRIF

12:53 Changeset [9570] by Nicolas MARTIN

Global renaming for core routines (./NEMO)

  • Folders
    • LIM_SRC_3 → ICE_SRC
    • OPA_SRC → OCE_SRC
  • CPP key: key_lim3 → key_si3
  • Modules, (sub)routines and variables names
    • MPI: mpi_comm_opa → mpi_comm_oce, MPI_COMM_OPA → MPI_COMM_OCE, mpi_init_opa → mpi_init_oce
    • AGRIF: agrif_opa_* → agrif_oce_*, agrif_lim3_* → agrif_si3_* and few more
    • TOP-PISCES: p.zlim → p.zice, namp.zlim → namp.zice
  • Comments
    • NEMO/OPANEMO/OCE
    • ESIM|LIM3 → SI3
11:49 Changeset [9569] by Pierre Mathiot

forgot to correct mask qns and emp in sbcflx (see #2083)

2018-05-10:

16:27 Changeset [9568] by Dave Storkey

Update branch to be relative to rev 9565 of dev_merge_2017.

16:26 Changeset [9567] by Pierre Mathiot

apply tmask(:,:,1) to erp, qrp, precip, snow, rnf, qns to fix #2083

15:50 Changeset [9566] by Dan Copsey

Use complex numbers in area calculations.

2018-05-09:

11:25 Changeset [9565] by Sebastien Masson

dev_merge_2017: fix name of run.stat.nc with AGRIF

11:24 Changeset [9564] by Sebastien Masson

dev_merge_2017: minor style modifications

2018-05-08:

15:48 Changeset [9563] by Stephen Haddad

MOCI #310: Update GO6 package branch to build with rigorous optimisation level compiler option.

15:08 Changeset [9562] by Stephen Haddad

MOCI #314: Updated config to work with MOCI build/test suite.

13:05 Changeset [9561] by Andrew Coward

Branch 2017/dev_merge_2017. Bug fix to prevent erroneous out of bounds access in mppini.F90 (land suppression case only). To be further tested to confirm fix is correct and sufficient

2018-05-07:

17:23 Changeset [9560] by Christian Ethe

Add the namelist block nammpp in all namelist_cfg

12:47 Changeset [9559] by Christian Ethe

Minor corrections to compute PISCES chemical constant at every time-step rather than every day

2018-05-05:

12:59 Changeset [9558] by Christian Ethe

Add missing namelist parameter in the source code

12:53 Changeset [9557] by Christian Ethe

Minor corrections

11:51 Changeset [9556] by Christian Ethe

Minor improvments to ensures PISCES restartability

10:12 Changeset [9555] by Christian Ethe

Remove the SPITZ12 configuration .exe file

2018-05-04:

20:22 Changeset [9554] by Pierre Mathiot

Correction bug with isf and flux form (mask issue) + change mask used for ubaro output

18:25 Changeset [9553] by Clement Rousset

add SPITZ12 into SETTE tests

18:02 Changeset [9552] by Clement Rousset

add a new configuration SPITZ12 which is a regional simulation around the Spitzbergen (Svalbard archipelago) which includes tides and sea-ice with open boundaries.

16:52 Changeset [9551] by Jerome Chanut

Remove tracer horizontal diffusion in test case + correct interfaces interpolation after understanding it is related to ORCA2 edited scale factors

15:59 Changeset [9550] by Clement Rousset

put back key_nosignedzero in cpp keys of orca2. I think it is needed but if not, please feel free of removing it again and in other configurations

12:32 Changeset [9549] by Stephen Haddad

MOCI 310 - Branch to fix compilation and running when using rigorous optimisation level compiler option.

12:23 Changeset [9548] by Stephen Haddad

MOCI #3314: creating branch for test suite.

12:21 Changeset [9547] by Stephen Haddad

test commit

07:57 Changeset [9546] by Gurvan Madec

dev_merge_2017: add a TKE parameter to control the activation of nn_etau below sea-ice

2018-05-03:

18:47 Changeset [9545] by Jerome Chanut

Add diagnostics in diawri - revert to old interface interpolation - change default regriding parameters - add linear ramp at startup

18:28 Changeset [9544] by Christian Ethe

No need to initialize solar penetration for Offline since qsr is read in file

17:48 Changeset [9543] by Clement Rousset

correct the output frequency for agrif nordic

17:43 Changeset [9542] by Clement Rousset

avoid problems with some configurations when outputing results

17:26 Changeset [9541] by Mirek Andrejczuk

move sbc_init above dom_init

14:28 Changeset [9540] by Clement Rousset

debug the dimension read for sea ice when using BDY

11:21 Changeset [9539] by Christian Ethe

dev_merge_2017 : validation of Offline configurations

2018-05-02:

16:45 Changeset [9538] by Juan Castillo

Same bug fix as in r9473 of the branch - see comment to previous revision

16:41 Changeset [9537] by Juan Castillo

Bug fix for key_asminc
WARNING - this fix is applied to revision 9196 of the branch, so the fix at revision 9473 is not included - it will be included in the next revision: this is done so we can use the same version as the operational suite, which at the moment does not contain the fix included in r9473

2018-05-01:

13:37 Changeset [9536] by Mirek Andrejczuk

#1953 and #1962 stop immediately if XIOS restart read/write functionality is used without key_iomput

13:22 Changeset [9535] by Mirek Andrejczuk

#1953 and #1962 disable XIOS related calls when key_iomput is not set

2018-04-30:

18:46 Changeset [9534] by Pierre Mathiot

correction on the check of .svn repository as since svn v1.7, .svn repository only available in the root of the working copy. Add print of last changed revision. Check revision at the root of the working copy.

17:54 Changeset [9533] by Andrew Coward

Branch 2017/dev_merge_2017. Cosmetic changes to ORCA2_LIM3PISCES namelist_cfg to remove empty namelist blocks and bring a few comments into line with reference namelist. This seems to be the best solution for keeping cfg namelists with minimal content whilst making a side by side comparison with the reference namelist meaningful and useful

17:00 Changeset [9532] by Gurvan Madec

dev_merge_2017: end of the renaming MLE

16:59 Changeset [9531] by Gurvan Madec

dev_merge_2017: rename traadv_mle.F90 & namtra_adv_mle as tramle.F90 & namtra_mle, resp.

16:54 Changeset [9530] by Jerome Chanut

ztilde update: add COMODO Internal wave test case

16:38 Changeset [9529] by Jerome Chanut

ztilde stability update

15:39 Changeset [9528] by Gurvan Madec

dev_merge_2017: add to new vorticity scheme (EET= EEN using e3t instead of e3f, and ENT= energy conserving at T-point). NB: not used in ref config.

13:10 Changeset [9527] by Gurvan Madec

dev_merge_2017: NO selection for lateral momentum boundary condition

12:22 Changeset [9526] by Gurvan Madec

dev_merge_2017: rename ln_…NONE as ln_…OFF (CONFIG, OPA_SRC, TOP_SRC) ; agrif zoom now only in AGRIF_NORDIC configuration

2018-04-29:

23:05 Changeset [9525] by Clement Rousset

change sette so that GYRE configuration runs and report is readable

2018-04-27:

19:41 Changeset [9524] by Clement Rousset

correct sas_biper namelists

19:39 Changeset [9523] by Pierre Mathiot

fix to OBS to deal with a change in the halo at the wrap points (Dan Lea)

18:52 Changeset [9522] by Clement Rousset

debug test cases

18:46 Changeset [9521] by Clement Rousset

correct lock_exchange namelists

18:43 Changeset [9520] by Clement Rousset

correct overflow namelists

18:41 Changeset [9519] by Clement Rousset

correct vortex namelists

17:59 Changeset [9518] by Clement Rousset

update sette tests so that all configurations are tested and the report includes the test cases if any

17:11 Changeset [9517] by Clement Rousset

small corrections to make SETTE work

16:46 Changeset [9516] by Gurvan Madec

#2075 - dev_merge_2017: CONFIG:correct the namelist_top_cfg + activate ln_traldf_msc in ORCA2 and NORDIC

14:56 Changeset [9515] by Dan Copsey

Do not use halos in area calculations.

14:49 Changeset [9514] by Clement Rousset

fix namelists one more time for agrif

14:30 Changeset [9513] by Pierre Mathiot

Add option to detect and remove subglacial lake (do not affect closed sea option)

13:06 Changeset [9512] by Richard Hill

Correct lbc_lnk call and fix initialisation bugs in diaptr.

12:04 Changeset [9511] by Clement Rousset

fix namelists of agrif_nordic

11:55 Changeset [9510] by Clement Rousset

fix restartability with SAS module =⇒ SAS_BIPER is now restartable

11:21 Changeset [9509] by Clement Rousset

SASBIPER test case formally introduced in sette tests (for now restartability fails with key_agrif and is ok without)

11:08 Changeset [9508] by Clement Rousset

add forgotten key_agrif

10:11 Changeset [9507] by Clement Rousset

add comments in SETTE for running AGRIF_NORDIC

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