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2015-04-09:

20:37 ticket/1495_UKMO_ISF edited by mathiot
(diff)
20:32 Changeset [5204] by mathiot

ISF cleaning branch: cleaning sbcisf + bug correction in zpshde_isf (ssumask instead of umask(:,:,1))

11:46 Ticket #1509 (alignment in iodef.xml (ORCA2_OFF_PISCES)) created by hulten
The alignment of the lines in …
00:16 Ticket #1362 (missing bits in dynzdf_imp_tam) reopened by sam
Changeset 5150 introduced two follow-on problems into module …

2015-04-08:

16:20 Changeset [5203] by timgraham

Modifications to tide code to allow a run to start from times other than midnight.
The tidal components must be initialised to the start of the day and kt_tide is set to what the timestep would have been at the start of the day (which could be < zero)

09:26 Working Groups/Data Assimilation edited by bouttier
(diff)
09:25 4th_NEMO-ASSIM_report.pdf attached to Working Groups/Data Assimilation by bouttier
Report on the 4th NEMO-Assim meeting - January 2015

2015-04-07:

18:14 Ticket #1508 (LIM3 important bug fix (crash)) closed by clem
fixed: fixed in rev 5202
17:40 Changeset [5202] by clem

LIM3: important bug fix to avoid crashes. See ticket #1508

17:40 Changeset [5201] by clem

LIM3: important bug fix to avoid crashes. See ticket #1508

17:38 Ticket #1508 (LIM3 important bug fix (crash)) created by clem
Dear all, we just found bugs in LIM3 with the capacity of crashing the …
16:22 Changeset [5200] by mathiot

ISF cleaning branch: umask_i is not an interior mask, bug in definition of scale factor for bottom cell if ice shelf, remove definition of unused variables (dynhpg, ldfslp, domzgr, trasbc)

15:50 ticket/1495_UKMO_ISF edited by mathiot
(diff)
14:27 Changeset [5199] by hadcv

Addition of standard_name entries and other changes.

  • XIOS namelist changes:
    • Added standard_name entries to field_def.xml for physical ocean variables and SBC fields
      • This does not cover all variables!
    • Added some new variable definitions
    • Renamed the coupled variable "calving" to "calving_cea" to avoid a clash with the ICB variable
    • Removed long_name entries from iodef.xml files
      • iodef_ar5.xml has been preserved where possible
    • Added axis definitions for 20C and 28C isotherm depths
    • Performed some minor cleaning and opportunistic minor edits
  • NEMO changes:
    • Replaced an iom_put call in DIA/diahth.F90 with a definition in field_def.xml
    • Added axis definitions for 20C and 28C isotherm depths
14:26 Ticket #1507 (Errors in namcfg & namctl not reported correctly) created by timgraham
At the start of nemo_init namcfg and namctl are read from namelist_ref and …
13:16 Ticket #1506 (Bug in ISOMIP configuration) closed by timgraham
fixed: Fixed at r5198
13:15 Changeset [5198] by timgraham

Minor fix for ticket #1506

13:14 Ticket #1506 (Bug in ISOMIP configuration) created by timgraham
The ISOMIP test is currently not running due to jp_cfg being set to 0.3 in …
10:37 Ticket #1505 (Add SEABASS as a reference configuration for NEMO v3_4_STABLE) closed by bouttier
fixed
10:35 Changeset [5197] by pabouttier

Add EXP00 for SEABASS configuration; See Ticket #1505

10:28 Changeset [5196] by pabouttier

Add SEABASS reference configuration for this NEMO version for now; See Ticket #1505

10:18 Ticket #1505 (Add SEABASS as a reference configuration for NEMO v3_4_STABLE) created by bouttier
SEABASS is a reference configration for Data Assimilation with NEMO. Since …

2015-04-03:

14:01 Ticket #1504 (bug in trunk after revision 5140) created by clevy
Using trunk to run ORCA1_LIM3 climatological forced experiment shows that: …
13:28 Changeset [5195] by vancop

sette modifs 2

11:55 Changeset [5194] by vancop

sette modifs 1

10:48 Changeset [5193] by vancop

A few cosmetic changes before SETTE

10:19 Ticket #1503 (TOP not conservative with vvl) created by cbricaud
a passive tracer is initilized with 1 everywhere in the domain we should …

2015-04-02:

06:08 Ticket #1442 (Variable 'nsec1jan000' is not updated during the adjoint time step) closed by bouttier
fixed
06:07 Changeset [5192] by pabouttier

Fix wrong update of nsec1jan000 in DOM/daymod_tam.F90; See Ticket #1442

06:05 Ticket #1481 (Ineffective update by adjoint of energy- and enstrophy-conserving ...) closed by bouttier
fixed
06:04 Changeset [5191] by pabouttier

Remove wrong initialisation of ze3d_ad in DYN/dynvor_tam.F90 ; See Ticket #1481

2015-04-01:

21:25 Ticket #1481 (Ineffective update by adjoint of energy- and enstrophy-conserving ...) reopened by sam
While Changeset 5153 moves the problematic assignment of 'ze3f_ad' to an …
18:26 Ticket #1442 (Variable 'nsec1jan000' is not updated during the adjoint time step) reopened by sam
The number of days of the preceding year ('nyear_len(0)') should be used …
18:14 Developers edited by nicolasmartin
(diff)
16:53 Developers edited by nicolasmartin
(diff)
15:02 Ticket #1393 (Tidal harmonic forcing namelist_ref) closed by timgraham
fixed: Fixed at r5190. Tidal components must now be set in namelist_cfg.
15:01 Changeset [5190] by timgraham

Fix for ticket #1393:
Removed tidal components from namelist_ref (and added a dummy value)
Added a check in tide_ini to ensure that at least one valid component is set

10:38 Ticket #1502 (Missing values in diaptr output (ORCA2)) created by omamce
There is two strips of missing values in ORCA2 diaptr output. At same …

2015-03-31:

19:58 Changeset [5189] by mathiot

ISF cleaning branch: simplification and bug correction in hpg_isf, zps_hde_isf, mixed layer definition, slope, diffusion, vertical advection and top friction

17:08 Changeset [5188] by timgraham

Branch for Met Office simplification task - tool to generate S coordinates file

16:44 Ticket #1356 (UKMO 2014 workplan task 13 - Updates to CICE interface) closed by timgraham
fixed: Committed to the trunk at the 2014 merge party.
14:27 Ticket #1496 (Problem with specification of tide with bdy) closed by timgraham
duplicate: I'm closing this as it's a duplicate of #1393.

2015-03-30:

16:25 Changeset [5187] by clem

LIM3 bug fix. Correcting the fresh water flux due to ice/snow used for PISCES (fmmflx). The snow part was missing.

12:03 Changeset [5186] by vancop

small error in reference parameters nn_catbnd

2015-03-27:

15:31 Changeset [5185] by vancop

TOP ice routines 2

15:29 Changeset [5184] by vancop

TOP ice routines

11:42 Changeset [5183] by clem

LIM3. finishing cleaning useless dimension nlay_i+1 in the routines

11:41 Changeset [5182] by clem

LIM3. finishing cleaning useless dimension nlay_i+1 in the routines

11:17 Changeset [5181] by vancop

Remove out-of-bound exceptions

11:16 Changeset [5180] by vancop

Remove out-of-bound exceptions

2015-03-26:

14:04 Changeset [5179] by clem

LIM3 bug fix on ice temperature output

09:56 Changeset [5178] by pabouttier

Create a specific branch for stochastic parametrization of EOS ; See ticket #1493

2015-03-25:

17:42 Changeset [5177] by clem

LIM3 improvement: part of conservation check put to false if key_bdy activated.

17:13 Changeset [5176] by clem

LIM3 online diagnostics (for debugging). Improvements of the online check of heat, salt and mass. The thresholds used to print errors on conservation (in ocean.output) now depend on the ice area (and therefore are independent on the simulation.

15:20 Changeset [5175] by vancop

Branch for sea ice tracer boundary condition, ticket #1490

15:19 Changeset [5174] by vancop

Branch for melt ponds, ticket #1487

15:19 Changeset [5173] by vancop

Branch for updated ice-atmosphere interface, ticket #1488

15:19 Changeset [5172] by vancop

Branch for CMIP6 outputs in LIM3, ticket #1489

14:10 Ticket #1497 (Only part of the array e_i (and others) stored in restart file) closed by clem
fixed: not a bug but fixed anyway in ticket #1492
14:09 Ticket #1492 (LIM3 future bug fix: heat budget) closed by clem
fixed
10:49 Ticket #1501 (C-comments inside Fortran comments make crash some cpp versions) closed by bouttier
fixed: Fixed in revision 5171.
10:49 Changeset [5171] by pabouttier

Remove star character to avoid C-style comments inside fortran comments; See Ticket #1501

10:48 Ticket #1501 (C-comments inside Fortran comments make crash some cpp versions) created by bouttier
In NEMOGCM/EXTERNAL/XMLF90/src/xpath/m_path.f90, some C-style comments …
10:44 Ticket #1500 (clean adjoint output) closed by bouttier
fixed: Fixed in revision 5170
10:44 Ticket #1499 (wrong intialization of adjoint tests) closed by bouttier
fixed
10:44 Changeset [5170] by pabouttier

Add missing lbc_lnk adj and remove extra ones in dynspg_flt ; See Ticket #1500

10:30 Changeset [5169] by pabouttier

Fix missing rn2b initialisation (direct model and TAM), described in Ticket #1498

10:02 Ticket #1360 (defects in asminc) closed by bouttier
fixed: Fixed in revision 5168
10:01 Changeset [5168] by pabouttier

Fixed several bugs described in Ticket #1360

2015-03-24:

20:45 Ticket #1443 (The trajectory at the before time level seems to be incorrectly set during ...) closed by bouttier
invalid: In fact, the direction of advancement of the state variables between the …
18:35 Changeset [5167] by clem

LIM3 bug fix. see ticket #1492 (forthcoming update) which also solve ticket #1497

18:28 Ticket #1500 (clean adjoint output) created by avidard
Related to my previous ticket #1499 one lbc_lnk_adj call is required for …
17:39 Changeset [5166] by hadcv
  • XIOS namelist changes:
    • Make units attributes UDUnits-compatible
    • Correct a couple of variable grid references
    • Remove a few duplicate field definitions
    • Rename a duplicate field definition for ice calving
    • Add a missing axis definition
    • Other minor changes
  • NEMO changes:
    • Rename sbccpl calving variable iom_put ID
17:35 Changeset [5165] by davestorkey

Branch to implement alternative "nn_etau" vertical mixing parameter settings.

16:18 Changeset [5164] by timgraham

Fixed initial calculation of nsec_day, nsec_month,nsec_week,nsec_year

14:40 Ticket #1499 (wrong intialization of adjoint tests) created by avidard
While a clean field for the direct model has halos, wraparound and …
13:28 Ticket #1498 (un-initialized N^2 before value at surface and bottom level) closed by gm
fixed: Correction done in istate.F90, see Changeset …
13:21 Changeset [5163] by gm

trunk: #1498 bug correction on rn2b initialization

11:30 Ticket #1498 (un-initialized N^2 before value at surface and bottom level) created by gm
In istate.F90, rn2 is initialized to zero, but not rn2b. Since eos_bn2 …

2015-03-23:

16:57 Changeset [5162] by davestorkey

Bug fixes for 2015/dev_r5021_UKMO1_CICE_coupling

16:16 Ticket #1497 (Only part of the array e_i (and others) stored in restart file) created by anders
The array e_i is allocated with third dimension as 1:nlay_i+1 …
16:01 Changeset [5161] by lovato

Restored the erroneously modified ln_tradmp logical in trcdmp.F90

15:30 Changeset [5160] by lovato

First implementation of BDY for TOP component, see #1441 (dev_r5144_CMCC5_BDY_for_TOP).

13:47 Changeset [5159] by davestorkey

Bug fix.

13:34 Changeset [5158] by timgraham

Bug fix

2015-03-19:

15:45 Ticket #1496 (Problem with specification of tide with bdy) created by mathiot
Error if number of tidal constituents in namelist_cfg is less than the …

2015-03-18:

18:26 Changeset [5157] by nicolasmartin

Bash optional coding conventions & Emacs fontification package

12:31 Ticket #1444 (Improved flexibility in the handling of the trajectory) closed by bouttier
wontfix: This enhancement won't be fix in this version but is still a good remarks …
12:30 Ticket #1442 (Variable 'nsec1jan000' is not updated during the adjoint time step) closed by bouttier
fixed
12:30 Changeset [5156] by pabouttier

Update nsec1jan000 in day_adj in damod_tam.F90 module; See Ticket #1442

12:18 ticket/1495_UKMO_ISF edited by mathiot
(diff)
12:14 Ticket #1267 (missing lbc_lnk_adj) closed by bouttier
fixed
12:13 Changeset [5155] by pabouttier

Add missing lbc_lnk_adj in tangent and adjoint routines of dyn_spg_flt_tam module; See Ticket #1267

12:08 Ticket #1244 (Erroneous makefile generated for model configuration with 'key_mpp_mpi') closed by bouttier
fixed
12:08 ticket/1495_UKMO_ISF created by mathiot
12:08 Changeset [5154] by pabouttier

Replace #include statement by fortran INCLUDE statement in lib_mpp_tam.F90; See Ticket #1244

12:05 Ticket #1481 (Ineffective update by adjoint of energy- and enstrophy-conserving ...) closed by bouttier
fixed
12:05 Changeset [5153] by pabouttier

Fix erroneous allocation in vor_een_adj routine; See Ticket 1481

12:03 Changeset [5152] by mathiot

specific branch for simplification/improvement of ONLY ice shelf related routines (zgr_isf, hpg_isf, zps_hde_isf …)

12:01 Ticket #1495 (specific branch for simplification/improvement of ONLY ice shelf related ...) created by mathiot
Ticket #1473 improved the performance, simplification and orthogonality of …
11:47 Ticket #1482 (No explicit lateral tracer diffusion in NEMOTAM) closed by bouttier
fixed
11:47 Ticket #1483 (Erroneous adjoint code in subroutine 'tra_ldf_iso_adj' of module ...) closed by bouttier
fixed
11:47 Changeset [5151] by pabouttier

Fixing defects in traldf_tam routines; See Ticket #1482 an #1483

11:06 Ticket #1362 (missing bits in dynzdf_imp_tam) closed by bouttier
fixed
11:04 Changeset [5150] by pabouttier

Adding missing bits in DYN/dynzdf_imp_tam.F90; See Ticket #1362

2015-03-17:

12:33 Ticket #1494 (SI3 documentation) created by vancop
The documentation of LIM3 We will update the documentation, but later …
11:40 Ticket #1331 (New development branch for under ice shelf seas) closed by mathiot
fixed: This ticket was closed at the December merge party.

2015-03-16:

13:13 Ticket #1493 (CNRS-4: Stochastic parametrization of the effect of unresolved scales in ...) created by bouttier
Add code to perturb stochastically the equation of state (see Brankart et …

2015-03-13:

22:44 Changeset [5149] by smasson

minor bugfix, following changeset:5147

18:09 Ticket #1492 (LIM3 future bug fix: heat budget) created by clem
Dear happy LIM3 users. We found a bug from the last revision of LIM3 which …
17:37 Ticket #1491 (corrections of 2 parameters in namelist_pisces_ref) closed by cperruche
fixed: I also added some corrections of the parameter description to be …
17:14 Changeset [5148] by cbricaud

correction of parameter value and description in pisces reference namelist ; see ticket #1491

16:47 Ticket #1491 (corrections of 2 parameters in namelist_pisces_ref) created by cperruche
In /trunk/NEMOGCM/CONFIG/SHARED/namelist_pisces_ref, update of 2 …
11:01 Changeset [5147] by cetlod

Merge changes from dev_r5020_CNRS_DIAPTR into trunk, see ticket #1435

2015-03-12:

13:01 Working Groups/Test Cases edited by flavoni
(diff)
13:00 minute-visio_2-3-2015.doc attached to Working Groups/Test Cases by flavoni
12:58 Working Groups/Test Cases edited by flavoni
(diff)
12:57 Ticket #1213 (XIOS issues) closed by acc
fixed: No such problems encountered with latest trunk (rev5140) and AMM12 SETTE …
12:55 Working Groups/Test Cases edited by flavoni
(diff)
12:42 Ticket #1490 (Specific branch for prescribed sea ice BGC) created by vancop
Name of the branch: branches/2015/dev_r5146_CNRS_LIM3_seaicebgc
12:40 Ticket #1489 (Specific branch for CMIP6 outputs) created by vancop
Name of the branch: branches/2015/dev_r5146_CNRS_LIM3_CMIP6out
12:38 Ticket #1488 (Specific branch for ice-atmosphere interface with LIM3) created by vancop
Name of the branch: branches/2015/dev_r5146_CNRS_LIM3_ice_atm
12:37 Ticket #1364 (XIOS online weighted average not working properly) closed by acc
fixed: Fixed by XIOS developments and trunk changes at rev 5127
12:36 Ticket #1487 (Specific branch for melt ponds in LIM3) created by vancop
Name of the branch: branches/2015/dev_r5146_CNRS_LIM3_meltponds
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