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2015-06-12:

20:34 Ticket #1533 (XIOS is not correctly initialised when running NEMO in non-MPP) closed by hadcv

fixed: Done at [5412]. Tests using ORCA2_LIM (previously failing configurations …

20:29 Changeset [5412] by hadcv

Set mpi_comm_opa in non-MPP cases (addresses #1533)
Add an xios_context_finalize in step_C1D

19:39 Changeset [5411] by cetlod

trunk : add missing lwp to avoid printing in the standard output file

18:39 Changeset [5410] by clem

change sbccpl for EC-Earth purpose, ie more options for sn_snd_temp ('oce and ice'), sn_snd_alb ('ice') and sn_snd_thick (add 1-cat case for 'ice and snow'). Plus few cleaning in sbcice_lim

17:40 Changeset [5409] by hadcv

Add new domain definition for global scalars and restore old generic scalar domain removed in [4689]
- Global scalars now reference the new domain, the rest reference the generic domain
Rewrite set_grid_bounds a bit to avoid allocating 4 2D arrays

12:48 2015WP/3_6_STABLE_final sprint edited by bouttier

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12:33 2015WP/3_6_STABLE_final sprint edited by clevy

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11:04 Changeset [5408] by mcastril

ticket #1523 Convergence Check namelist parameters addition

09:28 2015WP/3_6_STABLE_final sprint edited by smasson

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09:26 2015WP/3_6_STABLE_final sprint edited by smasson

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09:15 2015WP/3_6_STABLE_final sprint edited by smasson

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2015-06-11:

21:13 Changeset [5407] by smasson

merge dev_r5218_CNRS17_coupling into the trunk

19:37 2015WP/3_6_STABLE_final sprint edited by clevy

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19:18 2015WP/3_6_STABLE_final sprint edited by clevy

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19:07 2015WP/3_6_STABLE_final sprint edited by clevy

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19:06 2015WP/3_6_STABLE_final sprint edited by clevy

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17:37 Changeset [5406] by hadcv

Add cell area information (under ln_cfmeta namelist parameter)
Add depth bounds information

17:16 Ticket #1537 (wrong C preprocessor directives.) created by smasson

there is a flew syntax errors in the C preprocessor directives: […] I …

16:01 2015WP/3_6_STABLE_final sprint edited by cbricaud

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15:11 2015WP/3_6_STABLE_final sprint edited by clevy

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15:01 2015WP/3_6_STABLE_final sprint edited by clevy

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14:59 2015WP/3_6_STABLE_final sprint edited by clevy

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14:54 2015WP/3_6_STABLE_final sprint created by clevy

12:28 IS-ENES/core2_cmip edited by flavoni

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12:18 IS-ENES/core2_cmip edited by flavoni

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12:14 IS-ENES/core2_cmip edited by flavoni

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12:11 IS-ENES/core2_cmip edited by flavoni

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12:09 IS-ENES/core2_cmip edited by flavoni

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12:06 IS-ENES/core2_cmip edited by flavoni

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12:05 IS-ENES/core2_cmip edited by flavoni

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12:03 IS-ENES/core2_cmip edited by flavoni

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12:00 IS-ENES/core2_cmip edited by flavoni

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09:23 Changeset [5405] by pabouttier

Include chap_STO in NEMO_book.tex

09:20 Changeset [5404] by pabouttier

make the stochastic param. code more compliant with NEMO code conventions compliant; Add documentation skeleton

2015-06-10:

22:06 Changeset [5403] by smasson: dev_r5218_CNRS17_coupling: sette ok
18:33 Changeset [5402] by nicolasmartin: dev_r5092_CNRS_SETTE Nearing initial release by adding namelists & iodef files in comparison
17:29 Changeset [5401] by jamrae: Corrected a namelist error.
17:29 Changeset [5400] by cbricaud: add a missing USE iom ; linked to ticket #1531
17:06 Ticket #1536 (change fldread to allow reading of 4 dimensions files) closed by cbricaud: fixed: done at rev5399: https://forge.ipsl.jussieu.fr/nemo/changeset/5399/trunk
17:06 Changeset [5399] by cbricaud: change fldread to allow reading of 4 dimensions files ; ticket #1536
17:05 Ticket #1536 (change fldread to allow reading of 4 dimensions files) created by cbricaud
16:14 Ticket #1535 (geothermal heating read with IOF) closed by cbricaud: fixed: geothermal heating is read with IOF trabbc changed and namelist_ref done …
16:12 Changeset [5398] by cbricaud: undo some changes done by mistake at rev 5397
16:00 Changeset [5397] by cbricaud: use IOF for geothermal file reading ; see ticket #1535' NEMO/OPA_SRC/TRA/trabbc.F90 CONFIG/SHARED/namelist_ref
15:14 Ticket #1535 (geothermal heating read with IOF) created by cbricaud
14:59 Changeset [5396] by cbricaud: changes for ticket #1531 ; ahmcoef now read in netcdf file instead of ascii file
14:15 Changeset [5395] by jamrae: Updated out-of-date function name (cpl_prism_snd to cpl_snd).
14:04 Changeset [5394] by jamrae: Corrected errors in USE statements.
13:40 Changeset [5393] by jamrae: Renamed variable jpl as jl.
13:39 Ticket #1534 (Compilation failed on ORCA2_LIM due to a bad argument in iom.F90) closed by bouttier: fixed: With xios-1.0, it is OK. I close the ticket.
13:04 Changeset [5392] by jamrae: Corrected typo in declaration.
12:49 Changeset [5391] by jamrae: Corrected an error.
12:45 Ticket #1534 (Compilation failed on ORCA2_LIM due to a bad argument in iom.F90) created by bouttier: In trying to compile ORCA2_LIM (not in the SETTE environment) with the …
10:48 Changeset [5390] by jamrae: Changes required for GSI7 in coupled configuration.
07:54 Changeset [5389] by deazer: Changes required to Compare Standard CO6 with CO5

2015-06-09:

18:52 Changeset [5388] by hadcv: Add fix for XIOS initialization in server mode for non-MPP NEMO (and include a related XIOS finalize fix for C1D).
17:49 Changeset [5387] by flavoni: start adding ferret scripts to generate plots for test cases, related to ticket #1469
17:44 Working Groups/Test Cases/Implementation Strategy And Template edited by flavoni: (diff)
17:43 current-temp-1S1N-all.pdf attached to Working Groups/Test Cases/Implementation Strategy And Template by flavoni
17:43 Working Groups/Test Cases/Implementation Strategy And Template edited by flavoni: (diff)
17:34 Ticket #1533 (XIOS is not correctly initialised when running NEMO in non-MPP) created by hadcv: XIOS will hang when NEMO is not run with MPP. I had committed a fix for …
16:05 Changeset [5386] by gm: #1092 minor bug correction on tranpc.F90 algorithm
15:50 Changeset [5385] by cetlod: merge 2015/dev_r5204_CNRS_PISCES_dcy branch into the trunk, see ticket #1532
15:49 Changeset [5384] by jamrae: Branch-of-branch created.
15:47 Ticket #1532 (Merge of branch dev_r5204_CNRS_PISCES_dcy into the trunk.) created by cetlod: Summary of the branch : - Diurnal cycle in PISCES * computation of …
11:52 Working Groups/Test Cases/Implementation Strategy And Template edited by flavoni: (diff)
11:22 Ticket #1531 (change reading of ahmcoef format ( from ascii to netcdf )) created by cbricaud
11:13 Changeset [5383] by nicolasmartin: dev_r5092_CNRS_SETTE Add rebuild tool for comparing among other improvments & bugs
09:35 Changeset [5382] by smasson: dev_r5218_CNRS17_coupling: merge with trunk rev 5381
00:48 Changeset [5381] by smasson: dev_r5218_CNRS17_coupling: continue…

2015-06-08:

17:37 Changeset [5380] by aumont: various bug fixes and improvements
17:37 Changeset [5379] by aumont: removed a useless boolean from namelist_top
17:03 Changeset [5378] by cetlod: dev_r5204_CNRS_PISCES_dcy : bugfix to ensure restartability
16:58 Changeset [5377] by dancopsey: Added sn_snd_mpnd to the list of namelist variables to load.
15:13 Changeset [5376] by smasson: dev_r5218_CNRS17_coupling: bugfix for SAS-OPA coupling
14:04 Changeset [5375] by cetlod: dev_r5204_CNRS_PISCES_dcy : minor bugfix
12:57 Changeset [5374] by cetlod: dev_r5204_CNRS_PISCES_dcy : minor bugfix
12:47 Changeset [5373] by cetlod: dev_r5204_CNRS_PISCES_dcy : add some corrections to improve passive tracers conservation

2015-06-05:

21:14 Changeset [5372] by mcastril: ticket #1523 Message Packing
19:12 Changeset [5371] by cetlod: dev_r5204_CNRS_PISCES_dcy : fix some inconsistencies
18:26 Changeset [5370] by clem: correct output of the solar and non-solar fluxes received by the ice/ocean system
14:42 Changeset [5369] by cetlod: dev_r5204_CNRS_PISCES_dcy : update oce_trc
14:24 Changeset [5368] by cetlod: dev_r5204_CNRS_PISCES_dcy : minor bug corrections
13:34 Changeset [5367] by cetlod: NEMOGCM_dev_r5204_CNRS_PISCES_dcy : merge in dev_r5171_CNRS_LIM3_seaicebgc
13:26 Ticket #1530 (Failed compilation of AGRIF configuration in SETTE on ADA) created by bouttier: After my fix about storng.F90 to compile ORCA2_LIM with AGRIF (see ticket …
13:25 Ticket #1527 (SETTE agrif failed in an INTEL (r5331)) closed by bouttier: fixed: The safest solution for now is to add AGRIF_DO_NOT_TREAT dircetive. This …
13:21 Changeset [5366] by pabouttier: Add AGRIF_DO_NOT_TREAT directve in storng to compile AGRIF configuration in SETTE; See Ticket #1527
13:16 Changeset [5365] by cetlod: NEMOGCM_dev_r5204_CNRS_PISCES_dcy:( DRAKKAR) fix to avoid negative salinity values near river outlet
12:51 Changeset [5364] by vancop: clio bugfix
12:15 Changeset [5363] by hadcv: Merge of branches/2014/dev_r5134_UKMO4_CF_compliance (r5350, ticket #1332) into the trunk.
11:53 Changeset [5362] by vancop: update CLIO forcing to match with new standards
11:42 Changeset [5361] by cetlod: dev_r5171_CNRS_LIM3_seaicebgc : bugfix on trcsbc
11:21 Changeset [5360] by cetlod: dev_r5171_CNRS_LIM3_seaicebgc : minor corrections
09:42 Changeset [5359] by flavoni: correct mistake in python script, related to ticket #1469
09:11 Changeset [5358] by cetlod: NEMOGCM_dev_r5171_CNRS_LIM3_seaicebgc : fix minor bug in namelist

2015-06-04:

20:39 Changeset [5357] by clem: LIM3: change the interface between the ice and atm for both coupled and forced modes. Some work still needs to be done to deal with sublimation in coupled mode.
20:13 Changeset [5356] by nicolasmartin: dev_r5092_CNRS_SETTE Cleaning SETTE directory
20:09 Changeset [5355] by nicolasmartin: dev_r5092_CNRS_SETTE Many improvments
19:59 Changeset [5354] by cetlod: dev_r5204_CNRS_PISCES_dcy : bugfix to ensure restartability for configuration with PISCES
17:09 Changeset [5353] by smasson: dev_r5218_CNRS17_coupling: remove some changes made in previous commit
17:01 Changeset [5352] by smasson: dev_r5218_CNRS17_coupling: update for fraqsr
16:31 Changeset [5351] by vancop: revised namelists
16:12 Changeset [5350] by hadcv: Update to head of the trunk (r5344).
14:36 Working Groups/Test Cases/Implementation Strategy And Template edited by flavoni: (diff)
14:14 Changeset [5349] by cetlod: dev_r5204_CNRS_PISCES_dcy :update namelists
13:10 Changeset [5348] by cetlod: dev_r5204_CNRS_PISCES_dcy : Add a leapfrog temporal scheme in PISCES model
13:00 Changeset [5347] by hadcv: Added in the ln_cfmeta namelist parameter to OFF_SRC.
12:51 Changeset [5346] by flavoni: add script python for test cases,related to ticket #1469
12:29 Changeset [5345] by cetlod: dev_r5204_CNRS_PISCES_dcy : set the right passive tracer time-step in TOP routines
12:26 Working Groups/Test Cases/Implementation Strategy And Template edited by flavoni: (diff)
11:12 Changeset [5344] by davestorkey: Commit changes to namelist_ice_limX_ref accidentally left out of last night's commit.
09:48 Changeset [5343] by smasson: dev_r5218_CNRS17_coupling: update and bugfix (mainly) for SAS

2015-06-03:

19:07 Changeset [5342] by hadcv

Addition of cell bounds in output files and other changes.

XIOS namelist changes:
- Undid removal of some long_name entries in iodef_ar5.xml at last commit
- Removed mldkz5_max definition

NEMO changes
- Added set_grid_bounds subroutine to iom.F90
- Added a new namelist parameter to the namrun namelist "ln_cfmeta"; this controls the output of grid bounds
- Added arguments to nvertex, bounds_lon and bounds_lat in the iom.F90 XIOS interface wrappers

16:59 Changeset [5341] by davestorkey

Merge of 2014/dev_r4650_UKMO11_restart_functionality branch into the trunk
as part of 3.6_stable build. See ticket #1347.

16:02 Ticket #1529 (Tracer conservation and bbl) created by jchanut

The global budget of any tracer should be closed in NEMO provided key_vvl …

15:21 Changeset [5340] by davestorkey

And another one.

15:17 Changeset [5339] by davestorkey

Fix bug pointed out by reviewer.

14:36 Changeset [5338] by davestorkey

Update branch to head of trunk (and correct a change to nn_date0
in namelist_ref that crept in on Monday).

14:03 Changeset [5337] by davestorkey

Changes/fixes in response to reviewers comments.

08:59 Changeset [5336] by cetlod

dev_r5204_CNRS_PISCES_dcy : some bugfix to improve passive tracers conservation + adding the tracer unit vector in MY_TRC

02:40 Ticket #1528 (Array ndaice_da is undefined in nemo_v3_4_1) created by DuoYang

The array ndaice_da is undefined, which lead to compilation failure when …

2015-06-02:

17:23 Ticket #1527 (SETTE agrif failed in an INTEL (r5331)) created by mathiot: SETTE test with AGRIF failed at revision 5331 (not at revision 5305) on an …
16:43 Changeset [5335] by cetlod: dev_r5204_CNRS_PISCES_dcy : remove output formatting

2015-06-01:

19:19 Changeset [5334] by mathiot: Modifications in SETTE to test ice shelf code with the unsupported configuration ISOMIP. A better solution has to be find to test ice shelf.
19:09 Changeset [5333] by mathiot: mv ISOMIP reference configuration to unsupported configuration as decided (8th January, http://gws-access.ceda.ac.uk/public/nemo/uspconfigs)
18:59 Changeset [5332] by mathiot: ISOMIP config code removed (mv to unsupported configuration); correction of bug about initialisation of top friction (ISF only), about coastline modification if ISF activated and top and bottom e3uw if ISF.
17:41 Ticket #1526 (ln_tra_dmp / ln_tradmp) created by smasson: There is 2 namelist parameters with very similar names: - ln_tra_dmp in …
16:47 Changeset [5331] by smasson: dev_r5218_CNRS17_coupling: bugfix in sas
16:08 Changeset [5330] by cetlod: NEMOGCM_dev_r5204_CNRS_PISCES_dcy : move the call of sbc_rnf_init from sbcrnf to sbcmod
15:11 Changeset [5329] by pabouttier: Add stochastic parametrization of EOS
15:07 Changeset [5328] by pabouttier: Remove previous performances enhancement due to SETTE tests failure
12:31 Changeset [5327] by cetlod: NEMOGCM_dev_r5204_CNRS_PISCES_dcy : Add an option which gives the possibility to create a runoff depht file from runoff climatology
12:03 Changeset [5326] by aumont: add a specific routine to read the namelist for ice
12:00 Changeset [5325] by aumont: various bugfixes and code changes
10:54 Changeset [5324] by pabouttier: Fix a mistake in jpkm1 loop in dynkeg.F90
09:59 Changeset [5323] by pabouttier: Modification of zhke 3D-array in 2D-array in dynkeg.F90 for performances purpose
09:54 Changeset [5322] by pabouttier: Modification of dynadv in adequacy with hollingsworth correction development
09:24 Changeset [5321] by pabouttier: Add Hollingsworth correction in the computation of the gradient of Kinetic Energy

2015-05-29:

22:56 Ticket #1525 (out of bounds in divcurl!!) created by smasson: the definition of the work array zwv is wrong! the keyword used …
18:13 Changeset [5320] by mcastril: ticket #1523 Convergence Check
15:51 Changeset [5319] by mcastril
15:46 Changeset [5318] by mcastril: ticket #1523 Optimizations on NEMO 3.6 communications - Branch create
15:37 Changeset [5317] by timgraham: Updated the documentation and added a comment to namelist_ref
15:01 ticket/1347/review created by timgraham
15:00 ticket/1347 edited by timgraham: (diff)
14:59 Changeset [5316] by timgraham: Bugfixes: Modified namrun definition in OFF_SRC and namicerun for LIM3
14:11 Working Groups/Test Cases/Implementation Strategy And Template edited by flavoni: (diff)
14:10 Working Groups/Test Cases/Implementation Strategy And Template edited by flavoni: (diff)
12:28 Changeset [5315] by cetlod: dev_r5204_CNRS_PISCES_dcy : An adjustment (isrow) is made to the hard-wired
11:57 Changeset [5314] by timgraham: Added default values for nn_stocklist to namelist_ref
11:46 Changeset [5313] by timgraham: Merged head of trunk (r5302) into branch
10:48 Changeset [5312] by timgraham: Reset svn:keywords Id property
10:34 Changeset [5311] by cetlod: dev_r5204_CNRS_PISCES_dcy : define specific grid for zonal mean
10:32 Changeset [5310] by timgraham: Added functionality to TOP restarts

2015-05-28:

18:03 Changeset [5309] by davestorkey: 2014/Restart_functionality branch: Modify names of output iceberg restarts to include
experiment name as is done for ocean restarts.
17:36 Changeset [5308] by davestorkey: UKMO dev_r5107_eorca025_closea branch: apply changes to closea.F90.
17:34 Changeset [5307] by davestorkey: UKMO dev_r5107_eorca025_closea branch: remove SVN keyword updating
and clear SVN keyword information.
17:28 Changeset [5306] by davestorkey: UKMO branch to change closea lake definitions for extended ORCA025 (eORCA025)
grid and add definitions for Lake Victoria and North American Great Lakes.
16:03 Changeset [5305] by smasson: dev_r5218_CNRS17_coupling: bugfix
12:05 Changeset [5304] by pabouttier: Fix bugs in eos perturbations
10:57 Changeset [5303] by dancopsey: Used the mod_oasis at the top of lib_mpp.F90.
09:11 Changeset [5302] by smasson: wrk_alloc/dealloc check

2015-05-27:

19:14 Changeset [5301] by delrosso: Small modifications to batch-IBM_EKMAN_INGV and arch-IBM_EKMAN_INGV.fcm
18:50 Ticket #1524 (Wrong nn_eos value in GYRE_XIOS namelist_cfg) closed by delrosso: fixed
18:39 Changeset [5300] by delrosso: Ticket #1524 Correct nn_eos value in GYRE_XIOS namelist_cfg
18:34 Ticket #1524 (Wrong nn_eos value in GYRE_XIOS namelist_cfg) created by delrosso: nn_eos value in GYRE_XIOS namelist_cfg is set =2; this makes NEMO to crash …
18:34 Ticket #1523 (Optimizations on NEMO 3.6 communications) created by mcastril: Many of the NEMO model bottlenecks have its cause in the communications …
18:17 Changeset [5299] by smasson: dev_r5218_CNRS17_coupling: bugfixes
15:32 Changeset [5298] by dancopsey: Fixed ifdefs to include oasis3 and oasis3mct.
12:54 Changeset [5297] by dancopsey: Moved call to mod_oasis to avoid conflict with branch dev_r5021_UKMO1_CICE_coupling
12:47 Changeset [5296] by pabouttier: Commit stochastic parametrization module and perturbation of EOS
11:14 Changeset [5295] by timgraham: Minor bugfixes for sh94 and tanh stretching function cases

2015-05-26:

16:29 Changeset [5294] by timgraham: Fixes to hbatt calculation (corrected loop indices)
For ln_sf12 case all thickness variables now match those output in AMM12 meshmask.
15:38 Working Groups/Test Cases/Implementation Strategy And Template edited by flavoni: (diff)
12:14 Working Groups/Test Cases/Implementation Strategy And Template edited by flavoni: (diff)
12:10 Working Groups/Test Cases/Implementation Strategy And Template edited by flavoni: (diff)

2015-05-22:

23:36 Ticket #1522 (Bad MPP decomposition with key_nemocice_decomp) created by joakim: With key_nemocice_decomp NEMO alters how it calculates the size of …
18:53 Changeset [5293] by nicolasmartin: dev_r5092_CNRS_SETTE Standalone TRUST directory for regular NEMO configuration testing
18:49 Changeset [5292] by nicolasmartin: dev_r5092_CNRS_SETTE Standalone TRUST directory for regular NEMO configuration testing
18:33 Changeset [5291] by nicolasmartin: dev_r5092_CNRS_SETTE Add TRUST directory
18:24 Changeset [5290] by aumont: various bug fixes and updates of PISCES quota
18:22 Changeset [5289] by aumont: various bug fixes and updates of PISCES quota
18:22 Changeset [5288] by aumont: various bug fixes and updates of PISCES quota
17:38 Working Groups/Test Cases/Implementation Strategy And Template edited by flavoni: (diff)
17:33 Working Groups/Test Cases/Implementation Strategy And Template edited by flavoni: (diff)
17:23 Changeset [5287] by flavoni: commit scripts python to create files needed for test cases,and examples; related to ticket #1469
02:23 Ticket #1520 (Straight Boundary Segments from Namelist causes Memory Error Crash) closed by sallen@…: fixed: Updating to NEMO-3.6 at r5258 (current version) Fixed this problem.

2015-05-21:

20:28 Changeset [5286] by nicolasmartin: dev_r5092_CNRS_SETTE Major update with clear partition of architecture & user configuration
16:27 Changeset [5285] by aumont: test

2015-05-20:

18:20 Changeset [5284] by dancopsey: First attempt to convert OASIS3-MCT branch from NEMO3.5 to NEMO3.6. Original branch was dev/frrh/vn3.5_beta_hadgem3_mct