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2018-03-23:

23:39 Changeset [9425] by acc

Branch dev_merge_2017. Small bugfix to mpp_nfd_generic.h90 to get the ln_nnogather option working again. Tested with SETTE reproducibility tests and 4x8 and 8x4 decompositions give identical results to at least 1000 timesteps with and without ln_nnogather active.

15:07 New reply on Skilled created by nicolasmartin
[FCM] ZDFRIC.mod: target not found after an update:
13:46 New topic on Beginner created by cheshenko
[AGRIF] PGI can not compile ORCA2_LIM with key_agrif
09:57 Changeset [9424] by andmirek

#1881 initialize multidimensional array to 0 for XIOS read in iom_get_123d

2018-03-22:

20:38 Changeset [9423] by clem

small correction for the temperature diffusion when snow thickness is small

19:20 Changeset [9422] by jpalmier

JPALM — last modif after tests

18:55 Changeset [9421] by clem

cosmetics

18:53 Changeset [9420] by jpalmier

dd all atm CFC source file in any case

17:47 Changeset [9419] by jpalmier

JPALM — TOP last minute bug correction

16:35 Changeset [9418] by jpalmier

JPALM — switch back to CDIAC CFC file for CMIP experiment

16:28 Changeset [9417] by jpalmier

Create branch

12:42 Changeset [9416] by clem

debug icetsni output by initializing t_si in iceistate.F90

2018-03-21:

16:51 Changeset [9415] by clem

debug ice diffusion: avoid too small ice thicknesses by including a threshold (rn_himin) after ice dynamics. This should prevent the ice-ocean conduction flux from being abnormally strong

16:47 New reply on Tools created by jpaul
[SIREN] Restart file running error
16:33 New reply on Tools created by jpaul
[SIREN] Unstructured open boundaries
15:39 Changeset [9414] by nicolasmartin

Fix multiple defined references

14:43 Changeset [9413] by nicolasmartin

Complete review of 'Output and Diagnostic chapter',

  • Reduction of all lines to ~100 characters max for easier side-by-side diff
  • Use of \xmlcode{…}, \xmlline|…| and {xmllines} env. to include XML code
  • Split long tables for XML tags and attributes to smaller ones (per type family)
  • For readability, alignement of table cells content and replacement of simple equation env. by shortand syntax \[…\]
  • Several formatting modifications
14:38 New topic on Forks created by jaromir
[help-wanted] Lateral boundaries
12:51 New topic on Skilled created by ebreitmo
[FCM] ZDFRIC.mod: target not found after an update:

2018-03-20:

14:34 2018WP/Shared Actions edited by clevy
(diff)
12:19 user/flavoni/libIGCM_v3.6/config.card_description edited by nicolasmartin
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12:18 user/flavoni/libIGCM_v3.6/config.card_description edited by nicolasmartin
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11:23 Changeset [9412] by flavoni

cosmetics

2018-03-19:

13:49 Changeset [9411] by davestorkey

UKMO/dev_r8864_restart_date branch: bug fix.

13:18 user/flavoni edited by flavoni
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13:17 user/flavoni edited by flavoni
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12:49 user/flavoni edited by flavoni
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12:43 user/flavoni edited by flavoni
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12:39 user/flavoni/libIGCM_v4.0a edited by flavoni
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12:37 user/flavoni/libIGCM_v4.0a edited by flavoni
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12:34 user/flavoni/libIGCM_v4.0a edited by flavoni
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12:15 user/flavoni/libIGCM_v4.0a edited by flavoni
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2018-03-16:

19:58 Changeset [9410] by clem

avoid crash when -O0 optimization and ln_icediachk activated

19:15 Changeset [9409] by clem

debug to avoid crashing when -O0 optimization and ln_icediachk activated

2018-03-15:

18:00 Changeset [9408] by nicolasmartin

Typos fixes for undefined refs, 'Pe_flt' and 'tra_adv_zco' are still missing

17:40 Changeset [9407] by nicolasmartin

Complete refactoring of cross-referencing

  • Use of \autoref instead of simple \ref for contextual text depending on target type
  • creation of few prefixes for marker to identify the type reference: apdx|chap|eq|fig|sec|subsec|tab
17:29 Changeset [9406] by mathiot

fix for ticket #2066 in nemo 3.6

17:29 Changeset [9405] by andmirek

#1953 and #1962: Initialize lwxios and ln_xios_read

17:27 Ticket #2066 (bug if eos10 and interactive melt activated) created by mathiot
== Context Ice shelf cavities with interactive melt are working only for …
17:16 Changeset [9404] by mathiot

remove call timing_stop added during the merge with XIOS r/w

16:31 Tag change on System Team/Agenda/2018-03-15 by smasson
Tags VC added
15:57 Changeset [9403] by smasson

dev_merge_2017: update test_cases CANAL

15:55 Changeset [9402] by smasson

dev_merge_2017: update test_cases CANAL

2018-03-14:

18:30 Ticket #2065 (CFC gas transfer velocity: wrong coefficient?) closed by lovato
fixed: The code is supposed to use the coefficients described in Wanninkhof …
18:19 Changeset [9401] by lovato

trunk : Revise CFC gas transfer velocity and add CDIAC forcing file (#2065)

18:18 Changeset [9400] by lovato

v3.6 stable : Revise CFC gas transfer velocity and add CDIAC forcing file (#2065)

15:48 Changeset [9399] by smasson

dev_merge_2017: minor bugfix in diawri.F

14:33 Changeset [9398] by clem

dev_merge_2017: change ice routines so that reproducibility issue is solved for the ice (but there is still repro issue between r8996 and r9012 in dev_CNRS_2017 after 268 time steps of orca2-lim3-pisces)

14:27 Changeset [9397] by clem

dev_CNRS_2017: change ice routines so that reproducibility issue is solved for the ice (but there is still repro issue between r8996 and r9012 after 268 time steps of orca2-lim3-pisces)

11:59 Changeset [9396] by clem

dev_ICEMODEL: make the branche reproducible

09:40 Changeset [9395] by andmirek

#2050 move sbc_init

01:31 Working Groups/TOP/TOP-User Quick Guide edited by lovato
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01:26 Working Groups/TOP/TOP-User Quick Guide edited by lovato
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01:23 Working Groups/TOP/TOP-User Quick Guide edited by lovato
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00:49 Working Groups/TOP/TOP-User Quick Guide edited by lovato
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00:31 Working Groups/TOP/TOP-User Quick Guide edited by lovato
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2018-03-13:

23:54 Working Groups/TOP/TOP-User Quick Guide edited by lovato
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21:21 Changeset [9394] by nicolasmartin

Fix several typos, reverse (biblio then index) and shrink the manual backmatter (columns, font size, separator height) #1793

15:00 Changeset [9393] by nicolasmartin

Cleaning of section headings, reinstating the index by mixing \np and \forcode macros, continued conversion of source code inclusions

2018-03-12:

13:49 2018WP/ENHANCE-13_Olivier-Vertical_Sinking edited by lovato
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13:45 2018WP/ROBUST-03_CEthe-TOPDoc edited by lovato
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13:19 New topic on Tools created by mgunduz
[SIREN] Unstructured open boundaries
11:36 user/flavoni edited by flavoni
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11:35 user/flavoni edited by flavoni
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2018-03-09:

16:57 Changeset [9392] by nicolasmartin

Global replacement of patterns \np{id}=value by \forcode{id = value} for integer and booleans

15:26 Changeset [9391] by davestorkey

UKMO/dev_r8864_restart_date branch: bug fixes

14:41 Changeset [9390] by davestorkey

UKMO/dev_r8864_restart_date branch: commit changes.

12:15 2018WP/HPC-01_Silvia Mocavero_singlecoreperf edited by mocavero
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11:01 2018WP/Shared Actions edited by mathiot
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10:40 2018WP/Shared Actions/Status_dev_merge_2017_branch edited by clevy
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09:56 2018WP/Shared Actions/Status_dev_merge_2017_branch edited by cbricaud
(diff)

2018-03-08:

21:56 Changeset [9389] by nicolasmartin

Starting to use minted macros to highlight namelists parameters: \textit → \forcode
Work in progress as all escape characters (\) have to be removed in namelist parameter ids
Then several \np macros along with their paramater values with will be replaced by \forcode{np = value} apart from section headings for indexing
Fixes: style issue by reordering preamble section, removing \np macros inside equations and editing path to NEMO_manual.tex for subfiles.

17:57 Changeset [9388] by nicolasmartin

Global reorganisation of DOC directory: implementation and configuration of syntax highlighting with 'minted' LaTeX package
New macros have been created to insert different source codes (fortran, xml, c and shell-session) in the document.
Pygments Python package is now required to compile the documentation.

13:36 Changeset [9387] by andmirek

#2050 changes for sette 3 to work

12:49 Changeset [9386] by andmirek

move sbc_init below dom_init

12:36 Changeset [9385] by marc

GMED ticket 380. Merge changes from Julien's branches/NERC/dev_r5518_GO6_CO2_cmip.

11:36 Changeset [9384] by jpalmier

Jpalm — uniform field_def_bgc unit typo

10:22 Changeset [9383] by andmirek

#2050 fixes and changes

2018-03-07:

21:28 New topic on Tools created by bugone1
[SIREN] Restart file running error
18:23 Changeset [9382] by dford

Account for balancing increments, and don't allow any increments to take variables negative.

16:19 Changeset [9381] by dford

Implement pH balancing.

13:14 Changeset [9380] by jpalmier

JPALM — add the *_INV variables Missing long_name

12:43 Changeset [9379] by jpalmier

JPALM — Clean field_def_bgc

10:23 Ticket #1978 (Extend timer functionality) closed by andmirek
fixed: Reviewed and in GO6 package branch. gmed ticket 374.
08:12 Ticket #2065 (CFC gas transfer velocity: wrong coefficient?) created by mscheinert
== Context For the air-to-sea flux of CFCs/SF6 the gas transfer velocity …

2018-03-06:

20:59 Changeset [9378] by nicolasmartin

Global reorganisation of DOC directory: cosmetic changes

17:42 Changeset [9377] by jpalmier

back to * as CFC reading format

17:12 Changeset [9376] by nicolasmartin

Global reorganisation of DOC directory: refactoring & cleaning of TeX source code for readability

14:58 Ticket #2064 (ice velocity issues in AGRIF sponge layer with LIM2 VP) created by torgemartin
== Context == We found unusually high (order 101 to 102 greater than …
13:39 Changeset [9375] by jpalmier

JPALM — Typo error

13:35 Changeset [9374] by jpalmier

JPALM — 06-03-2018 — corrections after review suggestions ; see GMED 380 - comment 22

09:41 Ticket #2063 (Bug in bdydta for ice (3.6_STABLE and dev_merge_2017)) created by molines
== Context When using mono category ice bdy data, and having more than …

2018-03-05:

20:45 Changeset [9373] by nicolasmartin

Global reorganisation of DOC directory: files/folders renaming

17:15 New reply on Beginner created by mbareford
[ref-cfg] Intel build (with key_agrif) based on ORCA2_LIM seg faults
16:56 user/andmirek edited by andmirek
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16:55 user/andmirek edited by andmirek
(diff)
16:55 user/andmirek created by andmirek
14:44 Changeset [9372] by andmirek

#2062 correct USER_INC and USER_LIB

14:40 Changeset [9371] by andmirek

#2062 Changes allowing use XIOS compiled with oasis

14:31 Changeset [9370] by andmirek

#2062 Fcheck_archfile script

13:27 Ticket #2062 (modification of Fcheck_archfile script) created by andmirek
== Context Fcheck_archfile.sh checks configuration and makes modifications …

2018-03-02:

14:12 user/flavoni edited by flavoni
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14:11 user/flavoni edited by flavoni
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14:08 user/flavoni edited by flavoni
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2018-03-01:

12:44 Changeset [9369] by jpalmier

JPALM — branch corrections from review

2018-02-28:

23:09 Ticket #1180 (Bottom grid points with unrealistically cold temperature in ORCA2_LIM) reopened by dupontf
Bonjour, I am re-opening the ticket since we found the problem occurring …
19:22 Changeset [9368] by mathiot

add a sette script to compare *.stat with a reference SETTE output

17:38 Ticket #1962 (HPC-07(2017WP) Write restart file using XIOS) closed by mathiot
fixed
17:36 Ticket #1953 (HPC-06(2017WP) XIOS restart read functionality) closed by mathiot
fixed
17:23 Changeset [9367] by mathiot

Add restart read/write via XIOS capability (#1953 and #1962 and twiki: 2017WP/Met_Office-1_Mirek_XIOSread). WARNING: need to upgrade XIOS to r1296 to compile

16:29 Changeset [9366] by andmirek

#2050 first version. Compiled OK in moci test suite

14:39 Changeset [9365] by nicolasmartin

Replace 'split' by 'aligned' env, now the HTML conversion is fully operational with htlatex

12:35 Changeset [9364] by nicolasmartin

Fix mathrm syntax, equations in multline math env is still not accepted

10:29 Changeset [9363] by nicolasmartin

Working with htlatex (LaTeX to HTML): disable floatrow package globally, fix several issues by adding \protect to all "fragile" commands (\mdl, \np, \key and \ngn) inside floats (caption or table). Still few specific issues inside Annnex_ISO

2018-02-27:

12:33 2018WP/Shared Actions/Status_dev_merge_2017_branch edited by mathiot
(diff)
10:25 Ticket #1842 (ROBUST-02(2017WP) enhancement in TEST CASES) closed by clevy
fixed

2018-02-26:

19:10 Ticket #2061 (ROBUST-01_rbourdal_C1D) created by clevy
== Context … == Implementation plan …
19:08 Ticket #2060 (VALID-11_cethe_TOP_Offline) created by clevy
== Context … == Implementation plan …
19:06 Ticket #2059 (VALID-03_smasson_regional_agrif) created by clevy
== Context … == Implementation plan …
19:01 Ticket #2058 (ROBUST-04_SFlavoni_usrdef_doc) created by clevy
== Context … == Implementation plan …
18:57 Ticket #2057 (ROBUST-03_cethe_TOP_doc) created by clevy
== Context … == Implementation plan …
18:55 Ticket #2056 (PUBLI-02_nicolas_Project_Bibliography) created by clevy
Online services like RG or Google Scholar offer decent metrics so it is …
18:52 Ticket #2055 (ENHANCE-14_cethe_PISCES_LBC) created by clevy
== Context … == Implementation plan …
18:49 Ticket #2054 (ENHANCE-07_crousset_LIM3adv_valorisation) created by clevy
== Context … == Implementation plan …
18:47 Ticket #2041 (ENHANCE-04_Gurvan-RK3) closed by clevy
duplicate
16:38 Changeset [9362] by mathiot

clean input file list for ISOMIP. ISOMIP do not need any input file (ln_read_cfg set to false in the default namelist)

16:33 Changeset [9361] by mathiot

Correction of issue related to runoff in depth and isf (apparition during METO+MERCATOR merge). Now, filter+correction applied first on emp, then on rnf (if rnf), then on isf (if isf)

16:07 Ticket #2053 (ENHANCE-13_Olivier-Vertical_Sinking) created by nicolasmartin
== Context Create a generic package in TOP to handle the vertical sinking …
15:41 Changeset [9360] by nicolasmartin

Preamble.tex: some cleaning, use \path instead of \textit for path typeset, testing of 2 different ways to include source code with syntax highlighting, preliminary work on hyphenation to fix overfull errors

15:37 Ticket #2052 (ENHANCE-09(2018WP)_rbourdal_massfluxconvection) created by rbourdal
== Context Implementation of a mass flux scheme for convection. Resolution …
14:59 Ticket #2051 (Implementation of fresh water budget control for AGRIF configurations ...) created by fschwarzkopf
== Context In AGRIF configurations (TWO-WAY), fresh water budget control …
12:50 Changeset [9359] by andmirek

#2550 read nemelists using single processor

12:49 Changeset [9358] by andmirek

#2050 wrong reference branch

12:34 Changeset [9357] by andmirek

#2050 read namelist using single procerssor

12:27 Ticket #2050 (read namelists using single processor) created by andmirek
== Context In NEMO namelists are read by all processors. This ticket is …
11:15 Ticket #2049 (VALID-04_SFlavoni_Overflow_Lock) created by flavoni
== Context … == Implementation plan …
11:15 Ticket #2048 (VALID-03_SFlavoni_global_configuration) created by flavoni
== Context … == Implementation plan …
11:14 Ticket #2047 (ROBUST-07_SFlavoni-Notebook-testcases) created by flavoni
== Context … == Implementation plan …
11:13 Ticket #2046 (PUBLI-03_SFlavoni-advectionscheme-analysis) created by flavoni
== Context … == Implementation plan …
08:54 2018WP/ENHANCE-08_Gurvan-Implicit_Drags edited by gm
(diff)
08:53 Ticket #2045 (ENHANCE-08(2018WP)_Gurvan-Implicit_Drags) created by gm
== Context proper treatment of implicit top, bottom and possibly sea-ice …
08:51 2018WP/ENHANCE-04_Gurvan-RK3 edited by gm
(diff)
08:48 2018WP/ENHANCE-09_Gurvan-GEOMETRIC edited by gm
(diff)
08:47 2018WP/ENHANCE-05_Gurvan-Vertical_Advection edited by gm
(diff)
08:43 Ticket #2044 (ENHANCE-09_Gurvan-GEOMETRIC) created by gm
== Context introduction of the GEOMETRIC parameterization of unresolved …
08:34 Ticket #2043 (ENHANCE-06(2017WP)_Gurvan-Bulk_improvements) created by gm
== Context add cool skin and warm layer in the bulk package so they are …
08:27 Ticket #2042 (ENHANCE-05_Gurvan-Vertical_Advection) created by gm
== Context A 2018 development to add an adaptive-implicit vertical …
08:17 Ticket #2041 (ENHANCE-04_Gurvan-RK3) created by gm
== Context … == Proposal …

2018-02-24:

16:36 Users edited by clevy
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16:25 2018WP edited by clevy
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16:20 Users edited by clevy
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16:14 NEMO_Development_Strategy_Version2_2018-2022.pdf attached to Users by clevy

2018-02-23:

21:29 2018WP/Shared Actions edited by nicolasmartin
(diff)
20:58 2018WP/HPC-08_Mixed_precision edited by mcastril
(diff)
20:51 2018WP/HPC-08_Mixed_precision edited by mcastril
Reverted to version 2. (diff)
20:51 2018WP/HPC-08_Mixed_precision edited by mcastril
Reverted to version 2. (diff)
20:50 2018WP/HPC-08_Mixed_precision edited by mcastril
Reverted to version 2. (diff)
20:49 2018WP/HPC-08_Mixed_precision edited by mcastril
(diff)
20:39 Ticket #2040 (HPC-04_Mixed_precision_study-13.2_Implementation) created by mcastril
== Context == Implementation of a mixed precision approach in NEMO. == …
20:37 Ticket #2039 (HPC-13_Mixed_precision_study-13.1_Assessment) created by mcastril
== Context Assessment of how mixed precision could be applied to NEMO, by …
20:28 2018WP/HPC-08_Mixed_precision edited by mcastril
(diff)
20:24 2018WP/HPC-08_Mixed_precision created by mcastril
New page from template Work Plan Action?
18:32 Changeset [9356] by acc

Branch: 2017/dev_merge_2017. Cosmetic (hopefully) changes to namelist files to enforce more consistency between reference and configuration namelists. Changes in all reference configurations (SETTE tested) and most TEST_CASES (untested). OVERFLOW and LOCK_EXCHANGE still to do. See new file: NEMOGCM/CONFIG/SHARED/README.namelists for the conventions used.

18:15 2018WP/Shared Actions/Status_dev_merge_2017_branch edited by mathiot
(diff)
18:11 Changeset [9355] by nicolasmartin

Set mime-type SVN property for all namelists for syntax highlighting under Trac

18:02 Ticket #2038 (VALID-01(2018WP_cont)_clevy_AGRIF) created by clevy
== Context This validation action is only partly successful: …
18:00 Ticket #2037 (ROBUST-05_clevy_shaconemo_future) created by clevy
== Context The shaconemo (SHAred Configurations for NEMO) forge project …
17:58 Ticket #2036 (SEAICE-05_crousset_coupled_interface) created by clevy
== Context … == Implementation plan …
17:57 Ticket #2035 (SI3-04_crousset_evaluation_UM5vsPRATHER) created by clevy
== Context … == Implementation plan …
17:56 Ticket #2034 (SI3-03_crousset_validation_landfast) created by clevy
== Context … == Implementation plan …
17:55 Ticket #2033 (SI3-02_crousset_validation_rheology) created by clevy
== Context … == Implementation plan …
17:51 Ticket #2032 (ROBUST-02_LIM3-doc) created by clevy
== Context … == Implementation plan …
17:50 Ticket #2031 (AGRIF-02_crousset-LIM3) created by clevy
== Context … == Implementation plan …
17:35 Changeset [9354] by mathiot

missing #else

16:52 Changeset [9353] by jchanut

Tilde coordinate update: first draft

16:47 Changeset [9352] by frrh

Branch to merge my changes for 0d and 1d field coupling on a master PE
with Dan's functioning 1d river coupling (on all pes)

14:18 Changeset [9351] by jpalmier

merge this branch with dev_r5518_GO6_CO2_cmip 3270 to 9344

14:14 Changeset [9350] by nicolasmartin

Add extra message filters and fix too long section titles for ToC

14:08 Changeset [9349] by jpalmier

create branch

10:41 Changeset [9348] by dancopsey

Moved USE cpl_rnf_1d as it conflicted with GO6 package branch.

10:31 Changeset [9347] by nicolasmartin

Fix LaTeX compilation error on tilde special symbol in \subsubsection, add the use of silence LaTeX package to filter the verbosity of outputs

10:11 2018WP/VALID-06_storkey_global edited by davestorkey
(diff)
10:11 Ticket #2030 (VALID-06_storkey_global validation of proto-NEMO 4.0 release in ORCA1, ...) created by davestorkey
== Context The proto-NEMO 4.0 code (currently the dev_merge_2017 branch) …
07:54 Ticket #2029 (SI3-01(2018WP)_topographic_meltponds) created by vancop
== Context finish the last third of melt pond work … == Implementation …
02:31 Ticket #2028 (VALID-07_odea-AMM) created by deazer
== Context Test the AMM15 1.5km configuration in the new trunk == …

2018-02-22:

19:15 Changeset [9346] by nicolasmartin

Remove deprecated email for NEMO ST and uncomment \codedisplay command to avoid errors for HTML generation

17:44 Changeset [9345] by nicolasmartin

Fix typos in LaTeX files

14:20 Changeset [9344] by jpalmier

JPALM — tweak xCO2 check test -

2018-02-21:

19:49 Users edited by nicolasmartin
(diff)
18:55 2018WP/HPC-01_Silvia Mocavero_singlecoreperf edited by mocavero
(diff)
17:22 2018WP/HPC-06_andmirek-XIOSread edited by andmirek
(diff)
16:55 Ticket #2027 (zdf_iwm_init (zdfiwm.F90) reads from a misnamed name list) closed by acc
fixed: Changes committed to revision: [9343]. Ticket closed
16:52 Changeset [9343] by acc

Branch 2017/dev_merge_2017. Correct mis-named namelist in zdfiwm.F90 (#2027)

16:49 Ticket #2027 (zdf_iwm_init (zdfiwm.F90) reads from a misnamed name list) created by acc
== Context Branch dev_merge_2017: zdf_iwm_init reads from a namelist …
16:44 2018WP/Shared Actions/Status_dev_merge_2017_branch edited by davestorkey
(diff)
16:16 2018WP/HPC-06_andmirek-XIOSread edited by andmirek
(diff)
16:15 2018WP/HPC-07_andmirek_XIOSwrite created by andmirek
New page from template Work Plan Action?
16:09 2018WP/HPC-06_andmirek-XIOSread edited by andmirek
(diff)
16:06 2018WP/HPC-06_andmirek-XIOSread edited by andmirek
New page from template Work Plan Action? (diff)
16:04 2018WP/HPC-06_andmirek-XIOSread edited by andmirek
(diff)
16:03 2018WP/HPC-06_andmirek-XIOSread created by andmirek
New page from template Work Plan Action?
15:22 2018WP/Shared Actions/Status_dev_merge_2017_branch edited by nicolasmartin
(diff)
15:03 2018WP/Shared Actions/Status_dev_merge_2017_branch edited by davestorkey
(diff)
12:16 Changeset [9342] by mathiot

condition to detect grounding line for deep isf overwrite in some case the one for shallow isf

Note: See TracTimeline for information about the timeline view.