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2018-04-05:

21:39 New reply on Skilled created by nicolasmartin
[HPC][solved] NEMO on Xeon Phi
20:55 Users edited by nicolasmartin
(diff)

2018-04-04:

17:27 Changeset [9459] by clem

remove unecessary -O1 optimization in geo2ocean for agrif. I tested with -O3 and -O0 on intel proc, and both optimizations seem to work.

16:05 Changeset [9458] by clem

debug sas biper test case after the last commits

15:05 Changeset [9457] by clem

repair broken restart for sea-ice (from I do not know when)

09:24 Changeset [9456] by cetlod

dev_merge : Bugfix to avoid out-of-bounds in CFC model, see ticket #2073

09:21 Changeset [9455] by cetlod

Bugfix to avoid out-of-bounds in CFC model, see ticket #2073

09:17 Ticket #2073 (Out of bounds of passive tracers when using PISCES or another SMS model ...) created by cetlod
== Context NEMO-TOP is designed to be able to simulate SMS models and …

2018-04-03:

17:33 Changeset [9454] by clem

make sure that agrif is working with sea ice in any conditions

16:05 Ticket #2006 (ORCA2_LIM3_PISCES crashes after 179 timesteps in dev_merge_2017) closed by clevy
fixed
15:54 Ticket #2003 (minor bugs in PISCES) closed by clevy
fixed
15:52 Ticket #1987 (AGRIF code corruption tests not taken in account in SETTE report) closed by clevy
fixed
14:57 Changeset [9453] by clem

ensure that agrif works in debug mode. Agrif actually needs ua and va to be set to 0 at initialization, so that agrif_opa_sponge does not crash for floating point exception

2018-04-02:

17:38 New reply on Skilled created by patrizio
[FLO] Problem with NFLOAT in IOM.F90
14:17 New reply on Tools created by mgunduz
[SIREN][solved] Unstructured open boundaries
14:08 New topic on Tools created by mgunduz
[SIREN][solved] Segmentation fault - dimensions

2018-04-01:

15:49 New topic on Skilled created by damird
[HPC][solved] NEMO on Xeon Phi

2018-03-30:

18:12 Changeset [9452] by clem

ensure perfect conservation in ridging/rafting routine which failed sometimes because of unrealistic ice thicknesses from advection scheme (>99m). Maybe we should prevent it to happen but it would mean hiding a defect

18:12 Changeset [9451] by aumont

delete useless p5zlim.F90

18:08 Changeset [9450] by aumont

debug PISCES code

17:37 Changeset [9449] by smasson

dev_merge_2017: agrif bugfix for non-constant jpi/jpj + some cleaning…

2018-03-29:

09:12 2018WP/Shared Actions/Status_dev_merge_2017_branch edited by cbricaud
(diff)

2018-03-28:

18:42 Changeset [9448] by clem

correct minor bugs mostly for outputs

17:51 Changeset [9447] by clem

debug the scalar outputs

17:17 Changeset [9446] by smasson

dev_merge_2017: bugfix of a very nice typo error following the reorganisation of nemogcm.F90 and mppini.F90 in r9436 see #2070

15:17 Changeset [9445] by nicolasmartin

Fix for PGI compilation of AGRIF on 3.6, ref #2072

15:14 Ticket #2072 (PGI fails in AGRIF compilation) created by nicolasmartin
== Context Build an AGRIF configuration with pgfortran stops at …
14:27 New reply on Interfaces created by cheshenko
[AGRIF] PGI can not compile ORCA2_LIM with key_agrif
14:25 Changeset [9444] by smasson

dev_merge_2017: minor bugfix following the reorganisation of nemogcm.F90 and mppini.F90 r9436 see #2070

2018-03-27:

18:01 Ticket #2071 (Allowing more flexibility with the sea surface restoring subroutine) created by yruprich
== Context The default sbcssr subroutine does not allow to perform sea …
16:45 Changeset [9443] by andmirek

#2050 move sbc_init to original place

16:17 Ticket #2070 (Reorganisation of nemogcm.F90 and mppini.F90 to better separate domain ...) closed by acc
fixed
16:04 2018WP/VALID-05_clevy-AGRIF edited by clevy
(diff)
16:03 2018WP/VALID-05_clevy-AGRIF edited by clevy
(diff)
15:58 Changeset [9442] by acc

Branch 2017/dev_merge_2017. Local architecture and batch file update for compiler and XIOS versions

15:57 Changeset [9441] by acc

Branch 2017/dev_merge_2017. Reorganisation of nemogcm.F90 and mppini.F90. Stage 7: Add netcdf version of the run.stat files to stpctl.F90. Current implementation is very basic but may introduce opportunities for run-time monitoring; see ticket #2070

15:52 Changeset [9440] by acc

Branch 2017/dev_merge_2017. Reorganisation of nemogcm.F90 and mppini.F90. Stage 5: Enhancement to prtctl and suppression of overlap option; see ticket #2070

15:39 Changeset [9439] by acc

Branch 2017/dev_merge_2017. Reorganisation of nemogcm.F90 and mppini.F90. Stage 4: code update to sbcmod.F90 to remove redundant lbc_lnk call (emp); see ticket #2070

15:37 Changeset [9438] by acc

Branch 2017/dev_merge_2017. Reorganisation of nemogcm.F90 and mppini.F90. Stage 3: Better error handling in ctl_opn; see ticket #2070

15:35 Changeset [9437] by acc

Branch 2017/dev_merge_2017. Reorganisation of nemogcm.F90 and mppini.F90. Stage 2: code update to iom.F90 to take advantage of algorithmic fix; see ticket #2070

15:30 Changeset [9436] by acc

Branch 2017/dev_merge_2017. Reorganisation of nemogcm.F90 and mppini.F90 to better separate domain decomposition functions from the rest of the initialisation. Stage 1: Main reorganisation; see ticket #2070

15:25 Ticket #2070 (Reorganisation of nemogcm.F90 and mppini.F90 to better separate domain ...) created by acc
== Context Reorganisation of nemogcm.F90 and mppini.F90 to better separate …
15:20 Changeset [9435] by dford

Allow assimilation of PFT chlorophyll.

14:17 New reply on Beginner created by mbareford
[ref-cfg][solved] Intel build (with key_agrif) based on ORCA2_LIM seg faults
12:39 New reply on Interfaces created by nicolasmartin
[AGRIF] PGI can not compile ORCA2_LIM with key_agrif
12:24 2018WP/Shared Actions/Status_dev_merge_2017_branch edited by cbricaud
(diff)
12:20 2018WP/Shared Actions/Status_dev_merge_2017_branch edited by cbricaud
(diff)
10:32 Changeset [9434] by andmirek

#2067 add atribute for file opening

2018-03-26:

19:42 New reply on Interfaces created by nicolasmartin
[AGRIF] PGI can not compile ORCA2_LIM with key_agrif
17:38 Changeset [9433] by clem

add two outputs: mean snow temperature and ice surface temperature per category

17:34 Changeset [9432] by dford

Rename logchlbal to phyto2dbal.

16:49 Changeset [9431] by dford

Allow assimilation of non-log chlorophyll, and prepare for assimilation of PFTs.

16:49 New reply on Skilled created by nicolasmartin
[FLO] Problem with NFLOAT in IOM.F90
16:47 Ticket #2069 (Compilation error with key_floats) closed by nicolasmartin
fixed: In 9430: […]
16:47 Changeset [9430] by nicolasmartin

Bugfix on trunk for key_floats compilation fix #2069

16:42 Changeset [9429] by nicolasmartin

Bugfix on 3.6 for key_floats compilation #2069

16:37 Ticket #2069 (Compilation error with key_floats) created by nicolasmartin
== Context Build a configuration with key_floats ends in a compilation …
16:11 Changeset [9428] by clem

simplification

15:38 Ticket #2068 (Wrong namelist double diffusion mixing parameter name) created by Robin_Waldman
== Context I am currently checking the activation of the EVD scheme in …
15:16 Changeset [9427] by clem

small bug in ice thickness redistribution

12:46 Changeset [9426] by andmirek

#2067 Open namelists in read only mode

12:46 Ticket #2067 (Open namelists in read only mode) created by andmirek
== Context One of the possible reason for significant NEMO slowdown during …
12:45 New reply on Skilled created by ebreitmo
[FCM][solved] ZDFRIC.mod: target not found after an update:
11:30 2018WP/Shared Actions/Status_dev_merge_2017_branch edited by mathiot
(diff)
11:14 2018WP/Shared Actions/Status_dev_merge_2017_branch edited by mathiot
(diff)
10:16 2018WP/Shared Actions/Status_dev_merge_2017_branch edited by cbricaud
(diff)
10:14 Developers Committee edited by clevy
(diff)
10:12 MembersOfCommittees.update2018.pdf attached to Developers Committee by clevy
10:11 Developers Committee edited by clevy
(diff)

2018-03-24:

12:59 New topic on Skilled created by patrizio
[FLO] Problem with NFLOAT in IOM.F90

2018-03-23:

23:39 Changeset [9425] by acc

Branch dev_merge_2017. Small bugfix to mpp_nfd_generic.h90 to get the ln_nnogather option working again. Tested with SETTE reproducibility tests and 4x8 and 8x4 decompositions give identical results to at least 1000 timesteps with and without ln_nnogather active.

15:07 New reply on Skilled created by nicolasmartin
[FCM][solved] ZDFRIC.mod: target not found after an update:
13:46 New topic on Interfaces created by cheshenko
[AGRIF] PGI can not compile ORCA2_LIM with key_agrif
09:57 Changeset [9424] by andmirek

#1881 initialize multidimensional array to 0 for XIOS read in iom_get_123d

2018-03-22:

20:38 Changeset [9423] by clem

small correction for the temperature diffusion when snow thickness is small

19:20 Changeset [9422] by jpalmier

JPALM — last modif after tests

18:55 Changeset [9421] by clem

cosmetics

18:53 Changeset [9420] by jpalmier

dd all atm CFC source file in any case

17:47 Changeset [9419] by jpalmier

JPALM — TOP last minute bug correction

16:35 Changeset [9418] by jpalmier

JPALM — switch back to CDIAC CFC file for CMIP experiment

16:28 Changeset [9417] by jpalmier

Create branch

12:42 Changeset [9416] by clem

debug icetsni output by initializing t_si in iceistate.F90

2018-03-21:

16:51 Changeset [9415] by clem

debug ice diffusion: avoid too small ice thicknesses by including a threshold (rn_himin) after ice dynamics. This should prevent the ice-ocean conduction flux from being abnormally strong

16:47 New reply on Tools created by jpaul
[SIREN][solved] Restart file running error
16:33 New reply on Tools created by jpaul
[SIREN][solved] Unstructured open boundaries
15:39 Changeset [9414] by nicolasmartin

Fix multiple defined references

14:43 Changeset [9413] by nicolasmartin

Complete review of 'Output and Diagnostic chapter',

  • Reduction of all lines to ~100 characters max for easier side-by-side diff
  • Use of \xmlcode{…}, \xmlline|…| and {xmllines} env. to include XML code
  • Split long tables for XML tags and attributes to smaller ones (per type family)
  • For readability, alignement of table cells content and replacement of simple equation env. by shortand syntax \[…\]
  • Several formatting modifications
14:38 New topic on Forks created by jaromir
[help-wanted] Lateral boundaries
12:51 New topic on Skilled created by ebreitmo
[FCM][solved] ZDFRIC.mod: target not found after an update:

2018-03-20:

14:34 2018WP/Shared Actions edited by clevy
(diff)
12:19 user/flavoni/libIGCM_v3.6/config.card_description edited by nicolasmartin
(diff)
12:18 user/flavoni/libIGCM_v3.6/config.card_description edited by nicolasmartin
(diff)
11:23 Changeset [9412] by flavoni

cosmetics

2018-03-19:

13:49 Changeset [9411] by davestorkey

UKMO/dev_r8864_restart_date branch: bug fix.

13:18 user/flavoni edited by flavoni
(diff)
13:17 user/flavoni edited by flavoni
(diff)
12:49 user/flavoni edited by flavoni
(diff)
12:43 user/flavoni edited by flavoni
(diff)
12:39 user/flavoni/libIGCM_v4.0a edited by flavoni
(diff)
12:37 user/flavoni/libIGCM_v4.0a edited by flavoni
(diff)
12:34 user/flavoni/libIGCM_v4.0a edited by flavoni
(diff)
12:15 user/flavoni/libIGCM_v4.0a edited by flavoni
(diff)

2018-03-16:

19:58 Changeset [9410] by clem

avoid crash when -O0 optimization and ln_icediachk activated

19:15 Changeset [9409] by clem

debug to avoid crashing when -O0 optimization and ln_icediachk activated

2018-03-15:

18:00 Changeset [9408] by nicolasmartin

Typos fixes for undefined refs, 'Pe_flt' and 'tra_adv_zco' are still missing

17:40 Changeset [9407] by nicolasmartin

Complete refactoring of cross-referencing

  • Use of \autoref instead of simple \ref for contextual text depending on target type
  • creation of few prefixes for marker to identify the type reference: apdx|chap|eq|fig|sec|subsec|tab
17:29 Changeset [9406] by mathiot

fix for ticket #2066 in nemo 3.6

17:29 Changeset [9405] by andmirek

#1953 and #1962: Initialize lwxios and ln_xios_read

17:27 Ticket #2066 (bug if eos10 and interactive melt activated) created by mathiot
== Context Ice shelf cavities with interactive melt are working only for …
17:16 Changeset [9404] by mathiot

remove call timing_stop added during the merge with XIOS r/w

15:57 Changeset [9403] by smasson

dev_merge_2017: update test_cases CANAL

15:55 Changeset [9402] by smasson

dev_merge_2017: update test_cases CANAL

2018-03-14:

18:30 Ticket #2065 (CFC gas transfer velocity: wrong coefficient?) closed by lovato
fixed: The code is supposed to use the coefficients described in Wanninkhof …
18:19 Changeset [9401] by lovato

trunk : Revise CFC gas transfer velocity and add CDIAC forcing file (#2065)

18:18 Changeset [9400] by lovato

v3.6 stable : Revise CFC gas transfer velocity and add CDIAC forcing file (#2065)

15:48 Changeset [9399] by smasson

dev_merge_2017: minor bugfix in diawri.F

14:33 Changeset [9398] by clem

dev_merge_2017: change ice routines so that reproducibility issue is solved for the ice (but there is still repro issue between r8996 and r9012 in dev_CNRS_2017 after 268 time steps of orca2-lim3-pisces)

14:27 Changeset [9397] by clem

dev_CNRS_2017: change ice routines so that reproducibility issue is solved for the ice (but there is still repro issue between r8996 and r9012 after 268 time steps of orca2-lim3-pisces)

11:59 Changeset [9396] by clem

dev_ICEMODEL: make the branche reproducible

09:40 Changeset [9395] by andmirek

#2050 move sbc_init

01:31 Working Groups/TOP/TOP-User Quick Guide edited by lovato
(diff)
01:26 Working Groups/TOP/TOP-User Quick Guide edited by lovato
(diff)
01:23 Working Groups/TOP/TOP-User Quick Guide edited by lovato
(diff)
00:49 Working Groups/TOP/TOP-User Quick Guide edited by lovato
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00:31 Working Groups/TOP/TOP-User Quick Guide edited by lovato
(diff)

2018-03-13:

23:54 Working Groups/TOP/TOP-User Quick Guide edited by lovato
(diff)
21:21 Changeset [9394] by nicolasmartin

Fix several typos, reverse (biblio then index) and shrink the manual backmatter (columns, font size, separator height) #1793

15:00 Changeset [9393] by nicolasmartin

Cleaning of section headings, reinstating the index by mixing \np and \forcode macros, continued conversion of source code inclusions

2018-03-12:

13:49 2018WP/ENHANCE-13_Olivier-Vertical_Sinking edited by lovato
(diff)
13:45 2018WP/ROBUST-03_CEthe-TOPDoc edited by lovato
(diff)
13:19 New topic on Tools created by mgunduz
[SIREN][solved] Unstructured open boundaries
11:36 user/flavoni edited by flavoni
(diff)
11:35 user/flavoni edited by flavoni
(diff)

2018-03-09:

16:57 Changeset [9392] by nicolasmartin

Global replacement of patterns \np{id}=value by \forcode{id = value} for integer and booleans

15:26 Changeset [9391] by davestorkey

UKMO/dev_r8864_restart_date branch: bug fixes

14:41 Changeset [9390] by davestorkey

UKMO/dev_r8864_restart_date branch: commit changes.

12:15 2018WP/HPC-01_Silvia Mocavero_singlecoreperf edited by mocavero
(diff)
11:01 2018WP/Shared Actions edited by mathiot
(diff)
10:40 2018WP/Shared Actions/Status_dev_merge_2017_branch edited by clevy
(diff)
09:56 2018WP/Shared Actions/Status_dev_merge_2017_branch edited by cbricaud
(diff)

2018-03-08:

21:56 Changeset [9389] by nicolasmartin

Starting to use minted macros to highlight namelists parameters: \textit → \forcode
Work in progress as all escape characters (\) have to be removed in namelist parameter ids
Then several \np macros along with their paramater values with will be replaced by \forcode{np = value} apart from section headings for indexing
Fixes: style issue by reordering preamble section, removing \np macros inside equations and editing path to NEMO_manual.tex for subfiles.

17:57 Changeset [9388] by nicolasmartin

Global reorganisation of DOC directory: implementation and configuration of syntax highlighting with 'minted' LaTeX package
New macros have been created to insert different source codes (fortran, xml, c and shell-session) in the document.
Pygments Python package is now required to compile the documentation.

13:36 Changeset [9387] by andmirek

#2050 changes for sette 3 to work

12:49 Changeset [9386] by andmirek

move sbc_init below dom_init

12:36 Changeset [9385] by marc

GMED ticket 380. Merge changes from Julien's branches/NERC/dev_r5518_GO6_CO2_cmip.

11:36 Changeset [9384] by jpalmier

Jpalm — uniform field_def_bgc unit typo

10:22 Changeset [9383] by andmirek

#2050 fixes and changes

2018-03-07:

21:28 New topic on Tools created by bugone1
[SIREN][solved] Restart file running error
18:23 Changeset [9382] by dford

Account for balancing increments, and don't allow any increments to take variables negative.

16:19 Changeset [9381] by dford

Implement pH balancing.

13:14 Changeset [9380] by jpalmier

JPALM — add the *_INV variables Missing long_name

12:43 Changeset [9379] by jpalmier

JPALM — Clean field_def_bgc

10:23 Ticket #1978 (Extend timer functionality) closed by andmirek
fixed: Reviewed and in GO6 package branch. gmed ticket 374.
08:12 Ticket #2065 (CFC gas transfer velocity: wrong coefficient?) created by mscheinert
== Context For the air-to-sea flux of CFCs/SF6 the gas transfer velocity …

2018-03-06:

20:59 Changeset [9378] by nicolasmartin

Global reorganisation of DOC directory: cosmetic changes

17:42 Changeset [9377] by jpalmier

back to * as CFC reading format

17:12 Changeset [9376] by nicolasmartin

Global reorganisation of DOC directory: refactoring & cleaning of TeX source code for readability

14:58 Ticket #2064 (ice velocity issues in AGRIF sponge layer with LIM2 VP) created by torgemartin
== Context == We found unusually high (order 101 to 102 greater than …
13:39 Changeset [9375] by jpalmier

JPALM — Typo error

13:35 Changeset [9374] by jpalmier

JPALM — 06-03-2018 — corrections after review suggestions ; see GMED 380 - comment 22

09:41 Ticket #2063 (Bug in bdydta for ice (3.6_STABLE and dev_merge_2017)) created by molines
== Context When using mono category ice bdy data, and having more than …
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