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2018-04-05:

21:39 New reply on Skilled created by Nicolas MARTIN
[HPC] NEMO on Xeon Phi
20:55 Users edited by Nicolas MARTIN
(diff)

2018-04-04:

17:27 Changeset [9459] by Clement Rousset

remove unecessary -O1 optimization in geo2ocean for agrif. I tested with -O3 and -O0 on intel proc, and both optimizations seem to work.

16:05 Changeset [9458] by Clement Rousset

debug sas biper test case after the last commits

15:05 Changeset [9457] by Clement Rousset

repair broken restart for sea-ice (from I do not know when)

09:24 Changeset [9456] by Christian Ethe

dev_merge : Bugfix to avoid out-of-bounds in CFC model, see ticket #2073

09:21 Changeset [9455] by Christian Ethe

Bugfix to avoid out-of-bounds in CFC model, see ticket #2073

09:17 Ticket #2073 (Out of bounds of passive tracers when using PISCES or another SMS model ...) created by Christian Ethe
== Context NEMO-TOP is designed to be able to simulate SMS models and …

2018-04-03:

17:33 Changeset [9454] by Clement Rousset

make sure that agrif is working with sea ice in any conditions

16:05 Ticket #2006 (ORCA2_LIM3_PISCES crashes after 179 timesteps in dev_merge_2017) closed by Claire Levy
fixed
15:54 Ticket #2003 (minor bugs in PISCES) closed by Claire Levy
fixed
15:52 Ticket #1987 (AGRIF code corruption tests not taken in account in SETTE report) closed by Claire Levy
fixed
14:57 Changeset [9453] by Clement Rousset

ensure that agrif works in debug mode. Agrif actually needs ua and va to be set to 0 at initialization, so that agrif_opa_sponge does not crash for floating point exception

2018-04-02:

17:38 New reply on Skilled created by patrizio
[key_floats] Problem with NFLOAT in IOM.F90
14:17 New reply on Tools created by Murat Gunduz
[SIREN] Unstructured open boundaries
14:08 New topic on Tools created by Murat Gunduz
[SIREN] Segmentation fault - dimensions

2018-04-01:

15:49 New topic on Skilled created by damird
[HPC] NEMO on Xeon Phi

2018-03-30:

18:12 Changeset [9452] by Clement Rousset

ensure perfect conservation in ridging/rafting routine which failed sometimes because of unrealistic ice thicknesses from advection scheme (>99m). Maybe we should prevent it to happen but it would mean hiding a defect

18:12 Changeset [9451] by Olivier Aumont

delete useless p5zlim.F90

18:08 Changeset [9450] by Olivier Aumont

debug PISCES code

17:37 Changeset [9449] by Sebastien Masson

dev_merge_2017: agrif bugfix for non-constant jpi/jpj + some cleaning…

2018-03-29:

09:12 2018WP/Shared Actions/Status_dev_merge_2017_branch edited by Clement BRICAUD
(diff)

2018-03-28:

18:42 Changeset [9448] by Clement Rousset

correct minor bugs mostly for outputs

17:51 Changeset [9447] by Clement Rousset

debug the scalar outputs

17:17 Changeset [9446] by Sebastien Masson

dev_merge_2017: bugfix of a very nice typo error following the reorganisation of nemogcm.F90 and mppini.F90 in r9436 see #2070

15:17 Changeset [9445] by Nicolas MARTIN

Fix for PGI compilation of AGRIF on 3.6, ref #2072

15:14 Ticket #2072 (PGI fails in AGRIF compilation) created by Nicolas MARTIN
== Context Build an AGRIF configuration with pgfortran stops at …
14:27 New reply on Interfaces created by cheshenko
[AGRIF] PGI can not compile ORCA2_LIM with key_agrif
14:25 Changeset [9444] by Sebastien Masson

dev_merge_2017: minor bugfix following the reorganisation of nemogcm.F90 and mppini.F90 r9436 see #2070

2018-03-27:

18:01 Ticket #2071 (Allowing more flexibility with the sea surface restoring subroutine) created by yruprich
== Context The default sbcssr subroutine does not allow to perform sea …
16:45 Changeset [9443] by Mirek Andrejczuk

#2050 move sbc_init to original place

16:17 Ticket #2070 (Reorganisation of nemogcm.F90 and mppini.F90 to better separate domain ...) closed by Andrew Coward
fixed
16:04 2018WP/VALID-05_clevy-AGRIF edited by Claire Levy
(diff)
16:03 2018WP/VALID-05_clevy-AGRIF edited by Claire Levy
(diff)
15:58 Changeset [9442] by Andrew Coward

Branch 2017/dev_merge_2017. Local architecture and batch file update for compiler and XIOS versions

15:57 Changeset [9441] by Andrew Coward

Branch 2017/dev_merge_2017. Reorganisation of nemogcm.F90 and mppini.F90. Stage 7: Add netcdf version of the run.stat files to stpctl.F90. Current implementation is very basic but may introduce opportunities for run-time monitoring; see ticket #2070

15:52 Changeset [9440] by Andrew Coward

Branch 2017/dev_merge_2017. Reorganisation of nemogcm.F90 and mppini.F90. Stage 5: Enhancement to prtctl and suppression of overlap option; see ticket #2070

15:39 Changeset [9439] by Andrew Coward

Branch 2017/dev_merge_2017. Reorganisation of nemogcm.F90 and mppini.F90. Stage 4: code update to sbcmod.F90 to remove redundant lbc_lnk call (emp); see ticket #2070

15:37 Changeset [9438] by Andrew Coward

Branch 2017/dev_merge_2017. Reorganisation of nemogcm.F90 and mppini.F90. Stage 3: Better error handling in ctl_opn; see ticket #2070

15:35 Changeset [9437] by Andrew Coward

Branch 2017/dev_merge_2017. Reorganisation of nemogcm.F90 and mppini.F90. Stage 2: code update to iom.F90 to take advantage of algorithmic fix; see ticket #2070

15:30 Changeset [9436] by Andrew Coward

Branch 2017/dev_merge_2017. Reorganisation of nemogcm.F90 and mppini.F90 to better separate domain decomposition functions from the rest of the initialisation. Stage 1: Main reorganisation; see ticket #2070

15:25 Ticket #2070 (Reorganisation of nemogcm.F90 and mppini.F90 to better separate domain ...) created by Andrew Coward
== Context Reorganisation of nemogcm.F90 and mppini.F90 to better separate …
15:20 Changeset [9435] by David Ford

Allow assimilation of PFT chlorophyll.

14:17 New reply on Beginner created by mbareford
[Ref.Cfg.] Intel build (with key_agrif) based on ORCA2_LIM seg faults
12:39 New reply on Interfaces created by Nicolas MARTIN
[AGRIF] PGI can not compile ORCA2_LIM with key_agrif
12:24 2018WP/Shared Actions/Status_dev_merge_2017_branch edited by Clement BRICAUD
(diff)
12:20 2018WP/Shared Actions/Status_dev_merge_2017_branch edited by Clement BRICAUD
(diff)
10:32 Changeset [9434] by Mirek Andrejczuk

#2067 add atribute for file opening

2018-03-26:

19:42 New reply on Interfaces created by Nicolas MARTIN
[AGRIF] PGI can not compile ORCA2_LIM with key_agrif
17:38 Changeset [9433] by Clement Rousset

add two outputs: mean snow temperature and ice surface temperature per category

17:34 Changeset [9432] by David Ford

Rename logchlbal to phyto2dbal.

16:49 Changeset [9431] by David Ford

Allow assimilation of non-log chlorophyll, and prepare for assimilation of PFTs.

16:49 New reply on Skilled created by Nicolas MARTIN
[key_floats] Problem with NFLOAT in IOM.F90
16:47 Ticket #2069 (Compilation error with key_floats) closed by Nicolas MARTIN
fixed: In 9430: […]
16:47 Changeset [9430] by Nicolas MARTIN

Bugfix on trunk for key_floats compilation fix #2069

16:42 Changeset [9429] by Nicolas MARTIN

Bugfix on 3.6 for key_floats compilation #2069

16:37 Ticket #2069 (Compilation error with key_floats) created by Nicolas MARTIN
== Context Build a configuration with key_floats ends in a compilation …
16:11 Changeset [9428] by Clement Rousset

simplification

15:38 Ticket #2068 (Wrong namelist double diffusion mixing parameter name) created by Robin_Waldman
== Context I am currently checking the activation of the EVD scheme in …
15:16 Changeset [9427] by Clement Rousset

small bug in ice thickness redistribution

12:46 Changeset [9426] by Mirek Andrejczuk

#2067 Open namelists in read only mode

12:46 Ticket #2067 (Open namelists in read only mode) created by Mirek Andrejczuk
== Context One of the possible reason for significant NEMO slowdown during …
12:45 New reply on Skilled created by ebreitmo
[FCM] ZDFRIC.mod: target not found after an update:
11:30 2018WP/Shared Actions/Status_dev_merge_2017_branch edited by Pierre Mathiot
(diff)
11:14 2018WP/Shared Actions/Status_dev_merge_2017_branch edited by Pierre Mathiot
(diff)
10:16 2018WP/Shared Actions/Status_dev_merge_2017_branch edited by Clement BRICAUD
(diff)
10:14 Developers Committee edited by Claire Levy
(diff)
10:12 MembersOfCommittees.update2018.pdf attached to Developers Committee by Claire Levy
10:11 Developers Committee edited by Claire Levy
(diff)

2018-03-24:

12:59 New topic on Skilled created by patrizio
[key_floats] Problem with NFLOAT in IOM.F90

2018-03-23:

23:39 Changeset [9425] by Andrew Coward

Branch dev_merge_2017. Small bugfix to mpp_nfd_generic.h90 to get the ln_nnogather option working again. Tested with SETTE reproducibility tests and 4x8 and 8x4 decompositions give identical results to at least 1000 timesteps with and without ln_nnogather active.

15:07 New reply on Skilled created by Nicolas MARTIN
[FCM] ZDFRIC.mod: target not found after an update:
13:46 New topic on Interfaces created by cheshenko
[AGRIF] PGI can not compile ORCA2_LIM with key_agrif
09:57 Changeset [9424] by Mirek Andrejczuk

#1881 initialize multidimensional array to 0 for XIOS read in iom_get_123d

2018-03-22:

20:38 Changeset [9423] by Clement Rousset

small correction for the temperature diffusion when snow thickness is small

19:20 Changeset [9422] by Julien Palmieri

JPALM — last modif after tests

18:55 Changeset [9421] by Clement Rousset

cosmetics

18:53 Changeset [9420] by Julien Palmieri

dd all atm CFC source file in any case

17:47 Changeset [9419] by Julien Palmieri

JPALM — TOP last minute bug correction

16:35 Changeset [9418] by Julien Palmieri

JPALM — switch back to CDIAC CFC file for CMIP experiment

16:28 Changeset [9417] by Julien Palmieri

Create branch

12:42 Changeset [9416] by Clement Rousset

debug icetsni output by initializing t_si in iceistate.F90

2018-03-21:

16:51 Changeset [9415] by Clement Rousset

debug ice diffusion: avoid too small ice thicknesses by including a threshold (rn_himin) after ice dynamics. This should prevent the ice-ocean conduction flux from being abnormally strong

16:47 New reply on Tools created by Julien Paul
[SIREN] Restart file running error
16:33 New reply on Tools created by Julien Paul
[SIREN] Unstructured open boundaries
15:39 Changeset [9414] by Nicolas MARTIN

Fix multiple defined references

14:43 Changeset [9413] by Nicolas MARTIN

Complete review of 'Output and Diagnostic chapter',

  • Reduction of all lines to ~100 characters max for easier side-by-side diff
  • Use of \xmlcode{…}, \xmlline|…| and {xmllines} env. to include XML code
  • Split long tables for XML tags and attributes to smaller ones (per type family)
  • For readability, alignement of table cells content and replacement of simple equation env. by shortand syntax \[…\]
  • Several formatting modifications
14:38 New topic on Forks created by jaromir
[help-wanted] Lateral boundaries
12:51 New topic on Skilled created by ebreitmo
[FCM] ZDFRIC.mod: target not found after an update:

2018-03-20:

14:34 2018WP/Shared Actions edited by Claire Levy
(diff)
12:19 libIGCM_nemo_v_3_6/config.card_description edited by Nicolas MARTIN
(diff)
12:18 libIGCM_nemo_v_3_6/config.card_description edited by Nicolas MARTIN
(diff)
11:23 Changeset [9412] by Simona Flavoni

cosmetics

2018-03-19:

13:49 Changeset [9411] by Dave Storkey

UKMO/dev_r8864_restart_date branch: bug fix.

13:18 user/flavoni edited by Simona Flavoni
(diff)
13:17 user/flavoni edited by Simona Flavoni
(diff)
12:49 user/flavoni edited by Simona Flavoni
(diff)
12:43 user/flavoni edited by Simona Flavoni
(diff)
12:39 libIGCM_nemo_v_4_0_alpha edited by Simona Flavoni
(diff)
12:37 libIGCM_nemo_v_4_0_alpha edited by Simona Flavoni
(diff)
12:34 libIGCM_nemo_v_4_0_alpha edited by Simona Flavoni
(diff)
12:15 libIGCM_nemo_v_4_0_alpha edited by Simona Flavoni
(diff)

2018-03-16:

19:58 Changeset [9410] by Clement Rousset

avoid crash when -O0 optimization and ln_icediachk activated

19:15 Changeset [9409] by Clement Rousset

debug to avoid crashing when -O0 optimization and ln_icediachk activated

2018-03-15:

18:00 Changeset [9408] by Nicolas MARTIN

Typos fixes for undefined refs, 'Pe_flt' and 'tra_adv_zco' are still missing

17:40 Changeset [9407] by Nicolas MARTIN

Complete refactoring of cross-referencing

  • Use of \autoref instead of simple \ref for contextual text depending on target type
  • creation of few prefixes for marker to identify the type reference: apdx|chap|eq|fig|sec|subsec|tab
17:29 Changeset [9406] by Pierre Mathiot

fix for ticket #2066 in nemo 3.6

17:29 Changeset [9405] by Mirek Andrejczuk

#1953 and #1962: Initialize lwxios and ln_xios_read

17:27 Ticket #2066 (bug if eos10 and interactive melt activated) created by Pierre Mathiot
== Context Ice shelf cavities with interactive melt are working only for …
17:16 Changeset [9404] by Pierre Mathiot

remove call timing_stop added during the merge with XIOS r/w

15:57 Changeset [9403] by Sebastien Masson

dev_merge_2017: update test_cases CANAL

15:55 Changeset [9402] by Sebastien Masson

dev_merge_2017: update test_cases CANAL

2018-03-14:

18:30 Ticket #2065 (CFC gas transfer velocity: wrong coefficient?) closed by Tomas Lovato
fixed: The code is supposed to use the coefficients described in Wanninkhof …
18:19 Changeset [9401] by Tomas Lovato

trunk : Revise CFC gas transfer velocity and add CDIAC forcing file (#2065)

18:18 Changeset [9400] by Tomas Lovato

v3.6 stable : Revise CFC gas transfer velocity and add CDIAC forcing file (#2065)

15:48 Changeset [9399] by Sebastien Masson

dev_merge_2017: minor bugfix in diawri.F

14:33 Changeset [9398] by Clement Rousset

dev_merge_2017: change ice routines so that reproducibility issue is solved for the ice (but there is still repro issue between r8996 and r9012 in dev_CNRS_2017 after 268 time steps of orca2-lim3-pisces)

14:27 Changeset [9397] by Clement Rousset

dev_CNRS_2017: change ice routines so that reproducibility issue is solved for the ice (but there is still repro issue between r8996 and r9012 after 268 time steps of orca2-lim3-pisces)

11:59 Changeset [9396] by Clement Rousset

dev_ICEMODEL: make the branche reproducible

09:40 Changeset [9395] by Mirek Andrejczuk

#2050 move sbc_init

01:31 Working Groups/top-dg/TOP-User Quick Guide edited by Tomas Lovato
(diff)
01:26 Working Groups/top-dg/TOP-User Quick Guide edited by Tomas Lovato
(diff)
01:23 Working Groups/top-dg/TOP-User Quick Guide edited by Tomas Lovato
(diff)
00:49 Working Groups/top-dg/TOP-User Quick Guide edited by Tomas Lovato
(diff)
00:31 Working Groups/top-dg/TOP-User Quick Guide edited by Tomas Lovato
(diff)

2018-03-13:

23:54 Working Groups/top-dg/TOP-User Quick Guide edited by Tomas Lovato
(diff)
21:21 Changeset [9394] by Nicolas MARTIN

Fix several typos, reverse (biblio then index) and shrink the manual backmatter (columns, font size, separator height) #1793

15:00 Changeset [9393] by Nicolas MARTIN

Cleaning of section headings, reinstating the index by mixing \np and \forcode macros, continued conversion of source code inclusions

2018-03-12:

13:49 2018WP/ENHANCE-13_Olivier-Vertical_Sinking edited by Tomas Lovato
(diff)
13:45 2018WP/ROBUST-03_CEthe-TOPDoc edited by Tomas Lovato
(diff)
13:19 New topic on Tools created by Murat Gunduz
[SIREN] Unstructured open boundaries
11:36 user/flavoni edited by Simona Flavoni
(diff)
11:35 user/flavoni edited by Simona Flavoni
(diff)

2018-03-09:

16:57 Changeset [9392] by Nicolas MARTIN

Global replacement of patterns \np{id}=value by \forcode{id = value} for integer and booleans

15:26 Changeset [9391] by Dave Storkey

UKMO/dev_r8864_restart_date branch: bug fixes

14:41 Changeset [9390] by Dave Storkey

UKMO/dev_r8864_restart_date branch: commit changes.

12:15 2018WP/HPC-01_Silvia Mocavero_singlecoreperf edited by Silvia Mocavero
(diff)
11:01 2018WP/Shared Actions edited by Pierre Mathiot
(diff)
10:40 2018WP/Shared Actions/Status_dev_merge_2017_branch edited by Claire Levy
(diff)
09:56 2018WP/Shared Actions/Status_dev_merge_2017_branch edited by Clement BRICAUD
(diff)

2018-03-08:

21:56 Changeset [9389] by Nicolas MARTIN

Starting to use minted macros to highlight namelists parameters: \textit → \forcode
Work in progress as all escape characters (\) have to be removed in namelist parameter ids
Then several \np macros along with their paramater values with will be replaced by \forcode{np = value} apart from section headings for indexing
Fixes: style issue by reordering preamble section, removing \np macros inside equations and editing path to NEMO_manual.tex for subfiles.

17:57 Changeset [9388] by Nicolas MARTIN

Global reorganisation of DOC directory: implementation and configuration of syntax highlighting with 'minted' LaTeX package
New macros have been created to insert different source codes (fortran, xml, c and shell-session) in the document.
Pygments Python package is now required to compile the documentation.

13:36 Changeset [9387] by Mirek Andrejczuk

#2050 changes for sette 3 to work

12:49 Changeset [9386] by Mirek Andrejczuk

move sbc_init below dom_init

12:36 Changeset [9385] by Marc Stringer

GMED ticket 380. Merge changes from Julien's branches/NERC/dev_r5518_GO6_CO2_cmip.

11:36 Changeset [9384] by Julien Palmieri

Jpalm — uniform field_def_bgc unit typo

10:22 Changeset [9383] by Mirek Andrejczuk

#2050 fixes and changes

2018-03-07:

21:28 New topic on Tools created by bugone1
[SIREN] Restart file running error
18:23 Changeset [9382] by David Ford

Account for balancing increments, and don't allow any increments to take variables negative.

16:19 Changeset [9381] by David Ford

Implement pH balancing.

13:14 Changeset [9380] by Julien Palmieri

JPALM — add the *_INV variables Missing long_name

12:43 Changeset [9379] by Julien Palmieri

JPALM — Clean field_def_bgc

10:23 Ticket #1978 (Extend timer functionality) closed by Mirek Andrejczuk
fixed: Reviewed and in GO6 package branch. gmed ticket 374.
08:12 Ticket #2065 (CFC gas transfer velocity: wrong coefficient?) created by Markus Scheinert
== Context For the air-to-sea flux of CFCs/SF6 the gas transfer velocity …

2018-03-06:

20:59 Changeset [9378] by Nicolas MARTIN

Global reorganisation of DOC directory: cosmetic changes

17:42 Changeset [9377] by Julien Palmieri

back to * as CFC reading format

17:12 Changeset [9376] by Nicolas MARTIN

Global reorganisation of DOC directory: refactoring & cleaning of TeX source code for readability

14:58 Ticket #2064 (ice velocity issues in AGRIF sponge layer with LIM2 VP) created by Torge Martin
== Context == We found unusually high (order 101 to 102 greater than …
13:39 Changeset [9375] by Julien Palmieri

JPALM — Typo error

13:35 Changeset [9374] by Julien Palmieri

JPALM — 06-03-2018 — corrections after review suggestions ; see GMED 380 - comment 22

09:41 Ticket #2063 (Bug in bdydta for ice (3.6_STABLE and dev_merge_2017)) created by Jean-Marc Molines
== Context When using mono category ice bdy data, and having more than …
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