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2018-05-01:

21:59 New topic on Jobs created by xfettweis
[phd][post-doc] PhD or post-doctoral position in Polar Ocean Modelling with NEMO over Arctic | Closing 31 May 2018
13:37 Changeset [9536] by andmirek

#1953 and #1962 stop immediately if XIOS restart read/write functionality is used without key_iomput

13:22 Changeset [9535] by andmirek

#1953 and #1962 disable XIOS related calls when key_iomput is not set

11:33 Ticket #2080 (bug in z tilde?) created by davestorkey
== Context I think the IF test in line 327 of domvvl.F90 might be wrong. …
08:11 user/gm/Namelist_framework edited by gm
(diff)
08:05 user/gm edited by gm
(diff)

2018-04-30:

20:38 2018WP/CMCC-02_Stefania Ciliberti_BDYTool edited by sciliberti
(diff)
20:36 2018WP/CMCC-02_Stefania Ciliberti_BDYTool created by sciliberti
New page from template Work Plan Action?
20:33 2018WP/CMCC-01_Stefania Ciliberti_BDYModel edited by sciliberti
(diff)
20:28 2018WP/CMCC-01_Stefania Ciliberti_BDYModel created by sciliberti
New page from template Work Plan Action?
19:04 Tag change on System Team/Agenda/2018-05-03 by acc
Tags VC added
18:46 Changeset [9534] by mathiot

correction on the check of .svn repository as since svn v1.7, .svn repository only available in the root of the working copy. Add print of last changed revision. Check revision at the root of the working copy.

18:30 Ticket #2079 (pb compiling iom.F90 without key_iomput) created by clevy
== Context Trying to run a configuration with 2 AGRIFS zooms, I get some …
17:54 Changeset [9533] by acc

Branch 2017/dev_merge_2017. Cosmetic changes to ORCA2_LIM3PISCES namelist_cfg to remove empty namelist blocks and bring a few comments into line with reference namelist. This seems to be the best solution for keeping cfg namelists with minimal content whilst making a side by side comparison with the reference namelist meaningful and useful

17:00 Changeset [9532] by gm

dev_merge_2017: end of the renaming MLE

16:59 Changeset [9531] by gm

dev_merge_2017: rename traadv_mle.F90 & namtra_adv_mle as tramle.F90 & namtra_mle, resp.

16:54 Changeset [9530] by jchanut

ztilde update: add COMODO Internal wave test case

16:38 Changeset [9529] by jchanut

ztilde stability update

16:17 user/flavoni/TD_mod-num created by flavoni
15:39 Changeset [9528] by gm

dev_merge_2017: add to new vorticity scheme (EET= EEN using e3t instead of e3f, and ENT= energy conserving at T-point). NB: not used in ref config.

13:10 Changeset [9527] by gm

dev_merge_2017: NO selection for lateral momentum boundary condition

12:22 Changeset [9526] by gm

dev_merge_2017: rename ln_…NONE as ln_…OFF (CONFIG, OPA_SRC, TOP_SRC) ; agrif zoom now only in AGRIF_NORDIC configuration

2018-04-29:

23:05 Changeset [9525] by clem

change sette so that GYRE configuration runs and report is readable

2018-04-27:

19:41 Changeset [9524] by clem

correct sas_biper namelists

19:39 Changeset [9523] by mathiot

fix to OBS to deal with a change in the halo at the wrap points (Dan Lea)

18:52 Changeset [9522] by clem

debug test cases

18:46 Changeset [9521] by clem

correct lock_exchange namelists

18:43 Changeset [9520] by clem

correct overflow namelists

18:41 Changeset [9519] by clem

correct vortex namelists

17:59 Changeset [9518] by clem

update sette tests so that all configurations are tested and the report includes the test cases if any

17:11 Changeset [9517] by clem

small corrections to make SETTE work

16:46 Changeset [9516] by gm

#2075 - dev_merge_2017: CONFIG:correct the namelist_top_cfg + activate ln_traldf_msc in ORCA2 and NORDIC

14:56 Changeset [9515] by dancopsey

Do not use halos in area calculations.

14:49 Changeset [9514] by clem

fix namelists one more time for agrif

14:30 Changeset [9513] by mathiot

Add option to detect and remove subglacial lake (do not affect closed sea option)

14:08 user/gm/Namelist_framework edited by gm
(diff)
13:06 Changeset [9512] by frrh

Correct lbc_lnk call and fix initialisation bugs in diaptr.

12:04 Changeset [9511] by clem

fix namelists of agrif_nordic

11:55 Changeset [9510] by clem

fix restartability with SAS module =⇒ SAS_BIPER is now restartable

11:21 Changeset [9509] by clem

SASBIPER test case formally introduced in sette tests (for now restartability fails with key_agrif and is ok without)

11:08 Changeset [9508] by clem

add forgotten key_agrif

10:11 Changeset [9507] by clem

add comments in SETTE for running AGRIF_NORDIC

2018-04-26:

19:51 user/gm/Namelist_framework edited by gm
(diff)
16:54 Changeset [9506] by clem

for some mpp decomposition (typically 8x4) agrif failed at running because some barotropic fields needed to be initialized (ub2_b etc) for the 1st interpolation and update. These fields are now set to 0 in dynspg_ts

12:24 Changeset [9505] by clem

make sure to use the right iodef.xml and not the one defined in agrif

12:18 Ticket #2078 (cn_dir corrupts AGRIF input filenames) created by fschwarzkopf
== Context Input files (forcing etc.) cannot be found if cn_dir differs …
10:29 user/gm edited by gm
(diff)
09:55 user/gm/Namelist_framework edited by clevy
(diff)
09:36 user/gm/Namelist_framework created by gm

2018-04-25:

17:41 Changeset [9504] by acc

Branch 2017/dev_merge_2017. Cosmetic changes to namelists to restore alignment between reference and configuration namelists. Done for ORCA2_LIM3_PISCES pending a decision on whether or not to do the rest.

16:29 Ticket #2077 (xios-1.0 rev703 error in parallel output) created by PlankTOM
== Context On a linux cluster, and compiling with gcc, using one_file in …
16:27 Changeset [9503] by davestorkey

Add in missing updates to sbc_ice.F90.

10:53 Ticket #2076 (restart of NEMO web access and services) created by clevy
== Context Due to electric shutdown, all NEMO web access and services …
10:24 Changeset [9502] by frrh

Ensure numerous diagnostics are bit comparable ond different PE
decompositions.

10:18 Changeset [9501] by frrh

Ensure ALL diagnostics are bit comparable on different PE configurations.

Essentially this involves ensuring that ALL wrap columns in global models
are up to date at the point of writing diagnostics. Without this,
hundreds (!) of diagnostics feature wrap columns which contain uninitialised
data, the contents of which may vary with PE decomposition. Those are the
detectable ones. In the cases that diagnostics are actually initialised, it's
impossible to detect duff wrap column data w/o manually examining every
diagnostic. That then leads to questions about data integrity
(e.g. if someone daoes a global max or min operation on a field w/o
properly poplulated data they will get incorrect, and not necessarily
noticeable, information!)

Also remove redundant, duplicate computation and iom_put of 3D
diagnostic weiv_masstr.

2018-04-23:

16:40 Changeset [9500] by davestorkey

branches/UKMO/dev_merge_2017_CICE_interface : recommit science changes.

16:39 Changeset [9499] by davestorkey

branches/UKMO/dev_merge_2017_CICE_interface : clear SVN keywords.

16:38 Changeset [9498] by davestorkey

branches/UKMO/dev_merge_2017_CICE_interface : revert changes so that I can clear SVN keywords first.

16:37 Changeset [9497] by davestorkey

branches/UKMO/dev_merge_2017_restart_datestamp_GO6_mixing : recommit science changes.

16:36 Changeset [9496] by davestorkey

UKMO/branches/dev_merge_2017_restart_datestamp_GO6_mixing : clear SVN keywords.

16:34 Changeset [9495] by davestorkey

branches/UKMO/dev_merge_2017_restart_datestamp_GO6_mixing : revert previous change so I can remove SVN keywords first.

16:10 Changeset [9494] by davestorkey

Local changes to CICE interface code.

16:09 Changeset [9493] by davestorkey
  1. Datestamp restart files.
  2. Add extra mixing options.
  3. Add vertically interpolated MLD diagnostics.
15:52 Changeset [9492] by davestorkey

Temporary UKMO branch of dev_merge_2017 to implement datestamping of restart files and extra mixing options.

11:46 Changeset [9491] by davestorkey

Temporary branch of dev_merge_2017 to implement updates to CICE interface.

10:44 Changeset [9490] by gm

#2075 - dev_merge_2017: scale-aware setting of lateral viscous and diffusive coefficient

2018-04-20:

17:24 Changeset [9489] by andmirek

Fix restart reading with XIOS when land points are suppressed

10:44 Ticket #2075 (LDF: scale-aware setting of viscous and diffusive coefficient) created by gm
== Context In the current version of the trunk as well as in …

2018-04-19:

18:19 Changeset [9488] by jpalmier

start with hard coded under-ice relax value

17:34 Changeset [9487] by jpalmier

create branch

2018-04-17:

16:46 Changeset [9486] by kingr

Minor bugfix to allow code to build w/o key_asminc.

2018-04-14:

13:18 Changeset [9485] by clem

make sure that the double zoom configuration agrif_nordic is restartable. One must have moved the call to sea ice update at the end of step (after integrate_childgrids)

2018-04-13:

22:06 Changeset [9484] by clem

simplify namelists

20:19 Changeset [9483] by clem

add agrif nordic configuration to sette tests. I just noticed that one zoom config is restartable but not the double zoom config…ongoing

19:03 Changeset [9482] by clem

The configuration Agrif_Nordic is now restartable for any nn_fsbc(Parent) and nn_fsbc(Child). However we do not authorized nn_fsbc(Child) to be larger than 1 because otherwise it breaks the CFL too easily. The simulation would still run but the results would not be satisfactory. I still have to verify this point with the last version of the code

16:53 Changeset [9481] by nicolasmartin

Insert full text copy of CECILL V2 license (2006-09-05) as stated in NEMO Consortium Agreement in LICENSE file at root

16:40 Changeset [9480] by cbricaud

modify SETTE for new MERCATOR cluster ( KARA )

16:30 Changeset [9479] by nicolasmartin

Finally found a better solution by combining with CSS rule

15:41 Changeset [9478] by nicolasmartin

Should have found the right directive for ASCII code block

15:12 Changeset [9477] by nicolasmartin

After modifying Trac configuration, README should be rendered as rst without specifying MIME property

13:51 Changeset [9476] by nicolasmartin

Integrate ASCII image as literal block for rendering

13:47 Changeset [9475] by nicolasmartin

Add ASCII art image to README

2018-04-12:

18:14 Changeset [9474] by deazer

25h mean bugfix needed for midnight crossover

18:12 Changeset [9473] by deazer

Bug fix for 25h mean, needs reinitialzation of the mean variable at midnight

17:29 Changeset [9472] by deazer

Speed up NOOS transects

16:25 2018WP/Shared Actions/Status_dev_merge_2017_branch edited by mathiot
(diff)
16:24 2018WP/Shared Actions/Status_dev_merge_2017_branch edited by mathiot
(diff)
14:38 New reply on Tools created by mgunduz
[SIREN] Segmentation fault - dimensions

2018-04-11:

18:04 Changeset [9471] by acc

Branch 2017/dev_merge_2017. Add protection around compiler directive in geo2ocean.F90 so that it is only applied for Intel compilers. See ticket #2074

16:16 Changeset [9470] by nicolasmartin

Fix docutils typo

16:14 user/flavoni edited by flavoni
(diff)
16:13 user/flavoni edited by flavoni
(diff)
16:11 Changeset [9469] by nicolasmartin

Set MIME type property of README.rst to be processed automatically under Trac

16:02 Changeset [9468] by nicolasmartin

Upload Re Structured? Text file (.rst) to test the build of a wiki page by inclusion

13:29 Ticket #2074 (Out of bounds error in the extended row form of lbcnfd) closed by acc
fixed
13:22 Changeset [9467] by acc

Branch 2017/dev_merge_2017. Fix for out of bounds error with the extended form of lbcnfd. See ticket #2074

13:20 Ticket #2074 (Out of bounds error in the extended row form of lbcnfd) created by acc
== Context Out of bounds error in the extended row form of lbcnfd which …

2018-04-10:

16:51 2018WP/Shared Actions/Status_dev_merge_2017_branch edited by cbricaud
(diff)
11:38 New reply on Beginner created by mbareford
[ref-cfg] Intel build (with key_agrif) based on ORCA2_LIM seg faults

2018-04-09:

15:45 Changeset [9466] by jcastill

Move again some lines to allow merging with operational branches

2018-04-06:

19:57 Changeset [9465] by mathiot

ssh_bkginc deallocated twice

18:30 Changeset [9464] by clem

New configuration. This is a double agrif zoom in the Nordic Seas from ORCA2 to 1/2deg to 1/6deg. Input files are on ADA for now. This configuration will be better documented soon and will be integrated to sette tests. It will be subject to some changes to solve the remaining issues (restartability for example). At the end it will replace the Agulhas configuration

17:50 Changeset [9463] by jcastill

Modify a couple of lines to allow merging with the coupling branch - no science changes

17:48 Changeset [9462] by jcastill

Rearrange some lines so that it merges with operational branches

16:14 Changeset [9461] by aumont

bug fixes in iron cycle

14:54 Changeset [9460] by clem

correct the periodicity in the agrif zoom for sas biper test case

2018-04-05:

21:39 New reply on Skilled created by nicolasmartin
[HPC] NEMO on Xeon Phi
20:55 Users edited by nicolasmartin
(diff)

2018-04-04:

17:27 Changeset [9459] by clem

remove unecessary -O1 optimization in geo2ocean for agrif. I tested with -O3 and -O0 on intel proc, and both optimizations seem to work.

16:05 Changeset [9458] by clem

debug sas biper test case after the last commits

15:05 Changeset [9457] by clem

repair broken restart for sea-ice (from I do not know when)

09:24 Changeset [9456] by cetlod

dev_merge : Bugfix to avoid out-of-bounds in CFC model, see ticket #2073

09:21 Changeset [9455] by cetlod

Bugfix to avoid out-of-bounds in CFC model, see ticket #2073

09:17 Ticket #2073 (Out of bounds of passive tracers when using PISCES or another SMS model ...) created by cetlod
== Context NEMO-TOP is designed to be able to simulate SMS models and …

2018-04-03:

17:33 Changeset [9454] by clem

make sure that agrif is working with sea ice in any conditions

16:05 Ticket #2006 (ORCA2_LIM3_PISCES crashes after 179 timesteps in dev_merge_2017) closed by clevy
fixed
15:54 Ticket #2003 (minor bugs in PISCES) closed by clevy
fixed
15:52 Ticket #1987 (AGRIF code corruption tests not taken in account in SETTE report) closed by clevy
fixed
14:57 Changeset [9453] by clem

ensure that agrif works in debug mode. Agrif actually needs ua and va to be set to 0 at initialization, so that agrif_opa_sponge does not crash for floating point exception

2018-04-02:

17:38 New reply on Skilled created by patrizio
[FLO] Problem with NFLOAT in IOM.F90
14:17 New reply on Tools created by mgunduz
[SIREN] Unstructured open boundaries
14:08 New topic on Tools created by mgunduz
[SIREN] Segmentation fault - dimensions

2018-04-01:

15:49 New topic on Skilled created by damird
[HPC] NEMO on Xeon Phi
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