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2019-05-15:

21:19 Changeset [10985] by acc

2019/dev_r10721_KERNEL-02_Storkey_Coward_IMMERSE_first_steps : interface changes to tra and trc routines for design compliance and consistency. Fully SETTE tested (non-AGRIF, only)

17:59 2019WP/ENHANCE-03_Pierre Mathiot_Domcfg Tools edited by mathiot
(diff)
17:57 2019WP/ENHANCE-03_Pierre Mathiot_Domcfg Tools edited by mathiot
(diff)
15:57 HPC02_SingleCorePerformance_proof_of_concept.pdf attached to 2019WP/HPC-02_Epicoco_Single Core Performance by epico
Loop fusion - proof of concept
15:26 Ticket #2283 (Reproductibility issue in dynkeg.F90 if(ln_bdy)) created by girrmann
==== Context The result is dependant on the mpi domain decomposition when …
14:57 Changeset [10984] by girrmann

v4: Report commit from bugfix #2281 and #2282 fixed in the trunk

14:50 Ticket #2282 (Potential MPI deadlock if rimwidth>1) closed by girrmann
fixed: fixed, see [10983]
14:50 Changeset [10983] by girrmann

trunk: Remove Potential MPI deadlock if rimwidth>1, see #2282

14:45 Ticket #2282 (Potential MPI deadlock if rimwidth>1) created by girrmann
==== Context If the mpi domain decomposition cuts the bdy between rim = 1 …
14:39 Ticket #2281 (Regroup communication report) closed by girrmann
fixed: Fixed, see [10982]
14:37 Changeset [10982] by girrmann

trunk:Regroup communication report, See #2281

14:26 Ticket #2281 (Regroup communication report) created by girrmann
==== Context In some cases communication reports does not properly …
14:00 Changeset [10981] by rrenshaw

code fixes

13:34 Changeset [10980] by acc

2019/dev_r10721_KERNEL-02_Storkey_Coward_IMMERSE_first_steps : interface changes to traldf routines for design compliance and consistency. SETTE tested (GYRE_PISCES, only)

10:30 2019WP/AGRIF-01_jchanut_small_jpi_jpj edited by jchanut
(diff)
10:24 2019WP/AGRIF-01_jchanut_small_jpi_jpj edited by jchanut
(diff)
10:19 Changeset [10979] by jchanut

Relax minimum domain size with AGRIF, #2199

09:41 Changeset [10978] by davestorkey

2019/dev_r10721_KERNEL-02_Storkey_Coward_IMMERSE_first_steps : DOM and sshwzv.F90. (sshwzv.F90 will be rewritten somewhat when we rewrite the time-level swapping but I've done it anyway). Passes all non-AGRIF SETTE tests.

2019-05-14:

17:48 Changeset [10977] by acc

2019/dev_r10721_KERNEL-02_Storkey_Coward_IMMERSE_first_steps : Bugfix on TOP/PISCES/P4Z/p4zbio.F90 to restore tracer.stat compatibility

14:44 Changeset [10976] by acc

2019/dev_r10721_KERNEL-02_Storkey_Coward_IMMERSE_first_steps : Convert usrdef routines in tests MY_SRC directories to enable SETTE compilation and testing of TEST-CASES (non-AGRIF varieties at least; enables ISOMIP, OVERFLOW and LOCK_EXCHANGE)

11:54 2019WP/AGRIF-01_jchanut_small_jpi_jpj edited by jchanut
(diff)
11:39 2019WP/AGRIF-01_jchanut_small_jpi_jpj edited by jchanut
(diff)

2019-05-13:

18:34 Changeset [10975] by acc

2019/dev_r10721_KERNEL-02_Storkey_Coward_IMMERSE_first_steps : Finish converting all TOP routines and knock-on effects of these conversions. Fully SETTE tested (SETTE tests 1-6 and 9). This completes the first stage conversion of TRA and TOP but need to revisit and pass ts and tr arrays through the argument lists where appropriate.

17:59 Changeset [10974] by rrenshaw

code fixes

17:08 Changeset [10973] by cetlod

trunk : bugfix in Lability of big particles, see ticket #2278

15:14 Changeset [10972] by jchanut

Add hydrostatic pressure correction, #1959

15:08 Ticket #2280 (jperio=0 in parent_domcfg_updated) created by fschwarzkopf
==== Context Using the nesting-tools to create an updated parent …
15:07 Changeset [10971] by jchanut

Delete useless dvpt branch

14:02 Changeset [10970] by davestorkey

2019/dev_r10721_KERNEL-02_Storkey_Coward_IMMERSE_first_steps : CRS and FLO. Only tested compilation. Note that base code doesn't compile with key_floats (#2279), so changes to FLO not really tested at all.

13:52 Ticket #2279 (code doesn't compile with key_floats) created by davestorkey
BE CAREFUL !!! Due to dynamic behaviour of this ticket creation page, it …
12:02 Changeset [10969] by davestorkey

2019/dev_r10721_KERNEL-02_Storkey_Coward_IMMERSE_first_steps : ASM and knock-on changes. NB. Only tested for compilation - no SETTE tests for ASM.

11:43 Changeset [10968] by andmirek

GMED 462 print levels implementation

11:31 Changeset [10967] by andmirek

GMED 450 : improve IO

2019-05-10:

18:43 Changeset [10966] by acc

2019/dev_r10721_KERNEL-02_Storkey_Coward_IMMERSE_first_steps : Convert TOP routines in TOP/TRP directory and all knock on effects of these conversions. SETTE tested (GYRE_PISCES only)

18:02 Changeset [10965] by davestorkey

2019/dev_r10721_KERNEL-02_Storkey_Coward_IMMERSE_first_steps : DIA and stpctl.F90. Just testing in ORCA1 so far.

16:24 Changeset [10964] by rrenshaw

code fix

16:15 Changeset [10963] by acc

2019/dev_r10721_KERNEL-02_Storkey_Coward_IMMERSE_first_steps : Convert TOP routines in top-level TOP directory and all knock on effects of these conversions. SETTE tested.

15:46 Changeset [10962] by rrenshaw

code fix

15:44 Changeset [10961] by clem

debug the CFL diagnostics

15:36 Changeset [10960] by rrenshaw

code fix

14:35 Changeset [10959] by rrenshaw

code fix

14:26 Changeset [10958] by rrenshaw

added regional mean code to 3.6 branch for AMM7/15 suite

12:26 Changeset [10957] by davestorkey

2019/dev_r10721_KERNEL-02_Storkey_Coward_IMMERSE_first_steps : BDY module (including some removal of redundant code). Tested in AMM12 and ORCA1 (not full SETTE test at this stage).

11:58 Ticket #2278 (Bug in p4zpoc concerning big particles lability) closed by aumont
fixed
11:57 Changeset [10956] by aumont

bug fix related to ticket #2278

11:15 Changeset [10955] by acc

2019/dev_r10721_KERNEL-02_Storkey_Coward_IMMERSE_first_steps : Convert ZDF modules and all knock on effects of these conversions. SETTE tested

09:13 Ticket #2278 (Bug in p4zpoc concerning big particles lability) created by aumont
==== Context and analysis Lability of big particles is incorrectly …

2019-05-09:

18:12 Changeset [10954] by acc

2019/dev_r10721_KERNEL-02_Storkey_Coward_IMMERSE_first_steps : Convert TRA modules and all knock on effects of these conversions. SETTE tested

12:48 Changeset [10953] by davestorkey

UKMO/NEMO_4.0_GO8_package branch : change info_level in iodef.xml file.

12:32 Ticket #2274 (Ill defined namelist variable nb_jpk_bdy) closed by jamesharle
fixed
12:29 Changeset [10952] by jamesharle

namelist_cfg REWIND moved inside loop for nambdy_dta reading as, by
default, there is only a single nambdy_dta block (See ticket #2274)

12:27 Changeset [10951] by jamesharle

namelist_cfg REWIND moved inside loop for nambdy_dta reading as, by
default, there is only a single nambdy_dta block (See ticket #2274)

2019-05-08:

19:16 2019WP/HPC-12_Mocavero_mpi3 edited by francesca
(diff)
19:08 2019WP/HPC-12_Mocavero_mpi3 created by francesca
19:08 Tag change on 2019WP/HPC-12_Mocavero_mpi3 by francesca
Tags WP added
17:36 Changeset [10950] by andmirek

GMED 462 replace nprint == 1 with nprint > 3

17:33 Changeset [10949] by andmirek

GMED 462 corrections to previous changes

15:01 Changeset [10948] by andmirek

GMED 462 iceberg model

12:32 Changeset [10947] by andmirek

GMED 462 improvements in text diagnostics

10:56 Changeset [10946] by acc

2019/dev_r10721_KERNEL-02_Storkey_Coward_IMMERSE_first_steps : Convert STO, TRD and USR modules and all knock on effects of these conversions. Note change to USR module may have implications for the TEST CASES (not tested yet). Standard SETTE tested only

2019-05-07:

19:29 Changeset [10945] by clem

finish repairing the code when only ice dynamics is activated

19:28 Changeset [10944] by clem

finish repairing the code when only ice dynamics is activated

18:37 Changeset [10943] by jchanut

Delete useless dvpt branch

18:36 Changeset [10942] by jchanut

Delete useless dvpt branch

16:39 Changeset [10941] by rrenshaw

new branch to add fixes to section transports for reanalysis

16:28 Changeset [10940] by dancopsey
15:54 Changeset [10939] by jchanut
15:47 Changeset [10938] by jchanut
13:50 Changeset [10937] by jchanut

#1959: Add hydrostatic pressure correction in barotropic equations

12:20 Changeset [10936] by jchanut

#1959 - Pressure gradient correction

11:56 Changeset [10935] by jchanut
11:42 2019WP/ENHANCE-09_Jerome_freesurface edited by jchanut
(diff)
11:29 Changeset [10934] by jamesharle

Update code to accommodate multiple instances of nb_jpk_bdy (See ticket
#2274)

11:21 Changeset [10933] by jamesharle

Updating code to accommodate mulitple instances of nb_jpk_bdy (See
ticket #2274)

2019-05-05:

21:45 Changeset [10932] by clem

make sure a simulation can run when some parts of ice thermodynamics are deactivated (only for very specific use)

21:44 Changeset [10931] by clem

make sure a simulation can run when some parts of ice thermodynamics are deactivated (only for very specific use)

21:37 Changeset [10930] by clem

solve a problem of conservation when ice advection is called twice (because of a cfl that is too large)

21:35 Changeset [10929] by clem

solve a problem of conservation when ice advection is called twice (because of a cfl that is too large)

2019-05-03:

17:44 Changeset [10928] by davestorkey

2019/dev_r10721_KERNEL-02_Storkey_Coward_IMMERSE_first_steps : Finish converting DYN module, including some updates to previously processed modules, but excluding dynnxt.F90 (which needs to be completely rewritten) and wet_dry.F90 - I need to talk to Enda about this.

17:21 Ticket #2277 (Problem in the trend routine for UBS+VVL option) created by blaizotac
==== Context For the release 3.6 (and 4.0) In the file traadv_ubs.F90: In …
17:13 Changeset [10927] by acc

2019/dev_r10721_KERNEL-02_Storkey_Coward_IMMERSE_first_steps : Tidy up the diurnal cycle code (DIU) to separate its stand-alone functionality from the cool skin and warm layer calculations. The latter can be called from step; the former needs to be kept out of step so that it can implement its own time-level indices.
The stand-alone functionality will need to be revisited once the new timestepping is finalised. SETTE tested (ORCA2_ICE and SAS).

14:32 Changeset [10926] by clem

complete previous commit

14:32 Changeset [10925] by clem

complete previous commit

12:00 Changeset [10924] by clem

solve a problem of restartability and reproducibility if ln_cndflx is activated in the ice model (used for coupling at the Met-Office)

11:59 Changeset [10923] by clem

solve a problem of restartability and reproducibility if ln_cndflx is activated in the ice model (used for coupling at the Met-Office)

11:55 New topic on Jobs created by fmasson
[post-doc] Postdoctoral fellowship in Arctic climate modelling/prediction available at the Université catholique de Louvain, Louvain-la-Neuve

2019-05-02:

17:10 Changeset [10922] by acc

2019/dev_r10721_KERNEL-02_Storkey_Coward_IMMERSE_first_steps : Convert IOM, LDF, OBS and SBC directories and compatibility changes elsewhere that these changes enforce. Changes pass SETTE and compare with original trunk results. Outstanding issues (currently with work-arounds) in DIU/step_diu.F90 and fld_bdy_interp within SBC/fldread.F90; proper soltions pending

2019-05-01:

12:56 Changeset [10921] by davestorkey

2019/dev_r10721_KERNEL-02_Storkey_Coward_IMMERSE_first_steps : finish conversion of OFF

11:27 Changeset [10920] by dancopsey

Use ice fractions from the last coupling time to calculate grid box means of coupled fluxes.

2019-04-30:

17:29 Changeset [10919] by davestorkey

2019/dev_r10721_KERNEL-02_Storkey_Coward_IMMERSE_first_steps :

  1. Introduce ssh, uu_b, vv_b variables with time dimension (and pointers).
  2. Convert dynspg modules (but no change to subcycling in dynspg_ts.F90).
16:48 Changeset [10918] by dford

Add missing lbc_lnk, which helps with reproducibility.

16:44 Changeset [10917] by dford

Update chlorophyll climatology relaxation with biomass balancing, error checking, and diagnostic outputs.

13:45 Changeset [10916] by dford

Merge in revision 8148 to CO6_KD490_amm7_oper_fabm, which implemented relaxation to chlorophyll climatology for ERSEM.

13:43 Changeset [10915] by dford

Branch for AMM-ERSEM changes related to Met Office utils ticket 216.

10:16 Changeset [10914] by andmirek

GMED 450 flush iceberg files independent on lflush setting

10:04 Changeset [10913] by andmirek

GMED 450 changes in diagnostic messages for iceberg model

09:46 Changeset [10912] by andmirek

GMED 450 changes in namelist_ref

2019-04-29:

18:25 Ticket #2276 (SAS is not restartable) created by clem
SAS is currently reproducible but not restartable
18:14 Ticket #2275 (ln_zad_Aimp) closed by clem
fixed: fixed at r10906
18:11 Changeset [10911] by clem

Major change: the advection scheme UMx has been revisited to clean all the unphysical values which occured. Minor change: the ref config SPITZ12 has been slightly modified to test more parameterizations that are available in the code (melt ponds and landfast)

18:10 Changeset [10910] by clem

Major change: the advection scheme UMx has been revisited to clean all the unphysical values which occured. Minor change: the ref config SPITZ12 has been slightly modified to test more parameterizations that are available in the code (melt ponds and landfast)

17:58 Changeset [10909] by clem

correct a problem with indices for ice BDY at the eastern and northern boundaries

17:57 Changeset [10908] by clem

correct a problem with indices for ice BDY at the eastern and northern boundaries

17:54 Changeset [10907] by clem

solve ticket #2275

17:36 Changeset [10906] by clem

solve ticket #2275. Repro was just a matter of lbc (for Cu_adv) and an extended loop (for wi). Restartability was tricky (one needed to change r2dt by 2*rdt)

15:26 Ticket #2275 (ln_zad_Aimp) created by clem
Option for having implicit vertical advection (ln_zad_Aimp) is not …
13:50 Changeset [10905] by davestorkey

2019/dev_r10721_KERNEL-02_Storkey_Coward_IMMERSE_first_steps :

  1. Alter top-level TOP routines so they use the time-level indices from step.F90 rather than having their own time level indices.
  2. First part of changes for OFF modules.

2019-04-26:

14:52 Changeset [10904] by davestorkey

UKMO/NEMO_4.0_GO8_package : include shlat2d option.

14:24 Changeset [10903] by davestorkey

UKMO/NEMO_4.0_old_tidal_mixing : science change.

13:59 Changeset [10902] by davestorkey

UKMO branch to reinstate old Simmons et al tidal mixing scheme at NEMO 4.0 to compare with new scheme.

13:54 Changeset [10901] by davestorkey

UKMO/NEMO_4.0_GO6_mixing : science change.

13:51 Changeset [10900] by anaguiar

Changes to allow checking qns balance and if all terms are correctly evaluated - Test 4 described in https://code.metoffice.gov.uk/trac/gmed/ticket/454#comment:2

12:42 Changeset [10899] by davestorkey

UKMO branch to implement GO6 option for nn_htau.

12:29 Changeset [10898] by davestorkey

UKMO/NEMO_4.0_GO8_package: Add cfgs/METO_GO directory for standard diagnostics files.

12:17 Changeset [10897] by davestorkey

UKMO/NEMO_4.0_GO8_package branch: Copy over changes from previous version of the branch.

  1. Implement datestamping of restarts.
  2. Local diagnostics, particularly vertically-interpolated MLD diagnostics.
  3. Restrict write-out in tra_bbl_init with IF(lwp).
10:41 Changeset [10896] by cetlod

Adding a first Draft of TOP documentation

07:37 Tag change on System Team/Agenda/2019-05-16 by clevy
Tags VC added

2019-04-25:

14:51 Changeset [10895] by wayne_gaudin

Fixed the GPU=1 compile option to not use managed memory

14:29 Changeset [10894] by wayne_gaudin

Improving autogeneration of various versions

12:30 Ticket #2274 (Ill defined namelist variable nb_jpk_bdy) created by jamesharle
==== Context Interpolation on-the-fly for BDY: nb_jpk_bdy (number of …
12:05 Changeset [10893] by davestorkey

branches/2019/dev_r10721_KERNEL-02_Storkey_Coward_IMMERSE_first_steps : update with Gurvan's stylistic modifications.

11:22 Changeset [10892] by andmirek

GMED 450 reviewer comments

10:19 Tag change on System Team/Agenda/2019-04-25 by clevy
Tags VC added

2019-04-24:

14:36 Changeset [10891] by clem

1) correct ice velocity at the ice edge ⇒ it changes (slightly) the ice properties at the edge. 2) apply bdy_ice_dyn at each subtime step of rheology ⇒ it changes ice velocties at the boundaries quite drastically.

14:35 Changeset [10890] by clem

1) correct ice velocity at the ice edge ⇒ it changes (slightly) the ice properties at the edge. 2) apply bdy_ice_dyn at each subtime step of rheology ⇒ it changes ice velocties at the boundaries quite drastically.

13:23 Ticket #2273 (Postprocess results in paraview?) closed by acc
wontfix: The short answer is no but NEMO and XIOS produce multi-dimensional NetCDF …
08:36 Ticket #2273 (Postprocess results in paraview?) created by samfr
==== Context I am a starter with Nemo but are used to use paraview …

2019-04-23:

17:21 Changeset [10889] by davestorkey

UKMO GO8 package branch relative to NEMO 4.0 release.

16:55 Changeset [10888] by davestorkey

branches/UKMO/NEMO_4.0_mirror : clear SVN keywords

16:48 Changeset [10887] by davestorkey

Mirror of NEMO 4.0 release in UKMO branch with SVN keywords removed. To form base revision for UKMO builds.

16:47 Changeset [10886] by davestorkey

Branch created in wrong location - removing.

16:37 Changeset [10885] by davestorkey

Mirror of NEMO 4.0 release in UKMO branch with SVN keywords removed. To form base revision for UKMO builds.

2019-04-19:

17:25 user/nicolasmartin/Input Archives edited by nicolasmartin
(diff)
15:46 user/nicolasmartin/Input Archives edited by nicolasmartin
(diff)

2019-04-18:

19:17 user/nicolasmartin edited by nicolasmartin
(diff)
17:36 user/nicolasmartin edited by nicolasmartin
(diff)
17:00 Changeset [10884] by davestorkey

branches/2019/dev_r10721_KERNEL-02_Storkey_Coward_IMMERSE_first_steps : dynzdf, trazdf, trczdf

14:29 Changeset [10883] by davestorkey

branches/2019/dev_r10721_KERNEL-02_Storkey_Coward_IMMERSE_first_steps: some of the ocean physics modules.

2019-04-17:

17:40 Changeset [10882] by clem

correct the comments on the units of salt fluxes that were confusing

17:40 Changeset [10881] by clem

correct the comments on the units of salt fluxes that were confusing

12:02 Changeset [10880] by davestorkey

branches/2019/dev_r10721_KERNEL-02_Storkey_Coward_IMMERSE_first_steps:

  1. Move time indices from dom_oce.F90 to step.F90.
  2. Implement time dimension for passive tracers with independent set of time indices in trcstp.F90.
  3. Update all the traadv and trcadv modules.

2019-04-16:

14:58 Changeset [10879] by anaguiar

Changes to reinstate heat fluxes, see https://code.metoffice.gov.uk/trac/gmed/ticket/454

13:53 Changeset [10878] by andmirek

GMED 450 fix for ln_ctl

11:50 Changeset [10877] by davestorkey

branches/2019/dev_r10721_KERNEL-02_Storkey_Coward_IMMERSE_first_steps : momentum advection and dynvor modules.

10:02 Changeset [10876] by davestorkey

branches/2019/dev_r10721_KERNEL-02_Storkey_Coward_IMMERSE_first_steps : changes to top-level modules.

2019-04-15:

17:55 Changeset [10875] by andmirek

GMED 450 open solver.stat by processor 0 only

16:22 Ticket #2271 (Change units of PISCES Ndeposition data) closed by cetlod
fixed: Done in v4.0 and trunk. The input data have also been changed
15:57 Changeset [10874] by davestorkey

branches/2019/dev_r10721_KERNEL-02_Storkey_Coward_IMMERSE_first_steps : Revert all changes so far in preparation for implementation of new design.

14:34 Ticket #2272 (Uninitialised variables in PISCES) closed by cetlod
fixed
14:34 Changeset [10873] by cetlod

trunk : Initialisation of some local arrays, see ticket:2272

14:32 Changeset [10872] by cetlod

v4.0 : Initialisation of some local arrays, see ticket:2272

14:31 Ticket #2272 (Uninitialised variables in PISCES) created by cetlod
==== Context In PISCES 2 variables used to compute some ligands …
13:47 Changeset [10871] by frrh

Missing ENDIF, correct logical var name for 3.6 compatibility not 4.0

13:00 Changeset [10870] by frrh

Apply correction to tnpeo calculation including reordering of k loop
as per #1884. This version of the code reflects the vn 3.6 STABLE branch
more than the vn 4.0 trunk. Although functionality is the same, here we
include the lbc_lnk of the STABLE branch (not used in the trunk)
and the workspace allocation of zpe as a pointer rather than the trunk
version which defines zpe (and other workspace arrays) simply as normal
allocatable arrays. i.e. I've opted to reflect the STABLE branch exactly
rather than to transplant more optimal code from the trunk out of context.

12:34 Changeset [10869] by cetlod

trunk:Change units of Nitrogen deposition data in PISCES, see ticket:2271

12:32 Changeset [10868] by cetlod

v4.0:Change units of Nitrogen deposition data in PISCES, see ticket:2271

12:29 Ticket #2271 (Change units of PISCES Ndeposition data) created by cetlod
==== Context In PISCES we assume that the units of Nitrogen deposition …
10:38 Changeset [10867] by andmirek

GMED 450: find nn_timing in icbrst.F90

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