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merge fix_sette_ticket2239 : major simplification/improvement of SETTE (see README.rst for all the details), tested with the latest version of the trunk (r11160) (ticket #2239)

18:47 Changeset [11160] by mathiot

merge branch branch_ticket2259 : update nn_fsbc, nn_itend, rn_rdt of ORCA2 and related configuration (ticket #2259), update on sette will be commited soon

18:16 Documentation edited by nicolasmartin

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18:08 Documentation edited by nicolasmartin

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17:54 Documentation/Others edited by nicolasmartin

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17:53 Ticket #2301 (ICE_AGRIF file_def_nemo-ice.xml not working) closed by mathiot

fixed: fixed in r11159

17:50 Documentation edited by nicolasmartin

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17:50 Tag change on Documentation by nicolasmartin

Tags docs added; Documentation removed

17:49 Documentation/Others edited by nicolasmartin

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17:49 Tag change on Documentation/Others by nicolasmartin

Tags docs added

17:48 Changeset [11159] by mathiot

fix ticket #2301 (remove iceneg_pres and iceneg_volu from ICE_AGRIF file_def_nemo-ice.xml)

17:45 Ticket #2301 (ICE_AGRIF file_def_nemo-ice.xml not working) created by mathiot

BE CAREFUL !!! Due to dynamic behaviour of this ticket creation page, it …

17:34 Changeset [11158] by mathiot

replace hard coded svn command by ${SVN_CMD} (ticket #2239)

17:14 Documentation edited by nicolasmartin

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17:13 Citations created by nicolasmartin

17:13 Tag change on Citations by nicolasmartin

Tags citations added

16:44 Documentation edited by nicolasmartin

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16:38 Documentation edited by nicolasmartin

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16:20 Documentation edited by nicolasmartin

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16:13 Changeset [11157] by nicolasmartin

Addition of DOI badge

16:10 Changeset [11156] by nicolasmartin

Removal of PDF export

16:08 Changeset [11155] by nicolasmartin

Addition of DOI badge

15:43 Changeset [11154] by nicolasmartin

Bugfixes and changes remaining in the directory

15:40 Changeset [11153] by mathiot

add detection of local modifications in src/cfgs/test, SETTE results saved in XXXXX+ instead of XXXXX if there is differences

15:11 Changeset [11152] by nicolasmartin

Modifications in NEMO manual disseminated to SI³ and TOP

15:05 Ticket #2300 (jcat initialisation issue in icethd_do.F90) created by mathiot

==== Context Sette test AGRIF_DEMO_ST REPRO_4_8 failed to run on METO …

14:59 Changeset [11151] by nicolasmartin

New version of NEMO_manual.tex
New class scrreport for the document (KOMA-script version of default report)
Foreword is now placed before ToC.
All figures are configured with 1.0\textwidth as default.
For compatibilty, \frontmatter, \mainmatter and \backmatter cmds have been removed and old fonts in LaTeX subfiles have been replaced

\bf → \mathbf or \bfseries
\it → \itshape
\rm → \mathrm or \rmfamily
\tt → \ttfamily

14:13 Changeset [11150] by nicolasmartin

New version of foreword.tex
Most of the content have been transfered to the common frontpages.tex.
foreword.tex now contains only the 'Abstract' section which is specific for each manual.

12:48 Changeset [11149] by girrmann

dev_r10984_HPC-13 : minor modification of flather, the change in results is due to the non associativity of addition, see #2285

12:34 Changeset [11148] by nicolasmartin

Reorganisation of the latex directory
Creation of frontpages.tex to standardise the look of the manuals and few !LaTeX files to facilitate the overall modifications

minted : syntax highlighting
packages.sty : !LaTeX packages to load
styles.sty : gathering of all rules affecting the style
new_cmds.sty : custom LaTeX commands
todonotes.sty: insertion of TODO bubbles inline or at the margin

12:16 Documentation edited by nicolasmartin

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12:13 Changeset [11147] by clem

change name bathy_metry by bathy_meter in DOMAINcfg tool

12:04 Documentation edited by nicolasmartin

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12:00 Changeset [11146] by nicolasmartin

Add DOI badges of the3 reference manuals

11:54 New topic on Jobs created by aumont

[permanent] Ingénieur d'étude pour le soutien au développement du modèle PISCES | Closing 12 Jul. 2019

11:35 Changeset [11145] by cguiavarch

Merge changes from /NEMO/branches/2019/dev_r11078_OSMOSIS_IMMERSE_Nurser:r11139-11143

11:06 Changeset [11144] by cguiavarch

Create a branch for OSMOSIS

01:29 Documentation edited by nicolasmartin

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00:33 Documentation edited by nicolasmartin

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00:31 Documentation edited by nicolasmartin

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2019-06-19:

20:12 Documentation edited by nicolasmartin: (diff)
19:43 Documentation edited by nicolasmartin: (diff)
18:15 Changeset [11143] by agn: version w/o FK or local changes for NEMO repo
18:15 Changeset [11142] by agn: diahth now initilaized after iom_init
18:15 Changeset [11141] by agn: Modernize diahth
17:38 Changeset [11140] by mathiot: sette rpt changes: FAILED line in red, indication when the run start to diverge, move old/unused script to OLD, update README to README.rst and add extra parameters in param.cfg
16:51 Changeset [11139] by agn: Improvements to OSMOSIS for IMMERSE
16:31 Changeset [11138] by jcastill: Branch to update the branch UKMO/dev_r5518_obs_oper_update@11130 to NEMO3.6 stable @6232
15:31 Changeset [11137] by jcastill: Add missing files

2019-06-18:

19:21 Changeset [11136] by djlea: branch of code bug fixes to OBS and ASM (ticket #2298)
19:19 Changeset [11135] by djlea: branch of OBS ASM documentation updates (ticket #2297)
17:48 Changeset [11134] by jcastill: Full set of changes as in the original branch
17:45 Changeset [11133] by mathiot: remove un-needed namelist_ref bloc in domcfg tools and remove debug print (ticket #2143)
17:44 Changeset [11132] by jcastill: Remove svn keywords
17:41 Changeset [11131] by jcastill: Copy of branch AMM15_v3_6_STABLE_package_collate_bgc_diagnostics plus some fixes to merge observation branch
17:13 Changeset [11130] by jcastill: Fix small bug: variable was misspelled
17:11 Changeset [11129] by mathiot: simplification of domcfg (rm all var_n and var_b as it is not needed) (ticket #2143)

2019-06-17:

15:54 Changeset [11128] by nicolasmartin

Create styles folder to gather common files between manuals: NEMO.sty and ametsoc.bst

15:41 Changeset [11127] by clne

Create branch for surge work

15:24 Changeset [11126] by nicolasmartin

Reintroducing ametsoc.bst in latex shared folder

15:08 Changeset [11125] by nicolasmartin

Move Bib Tex? style file and Bib Tool? cfg to /utils/dev global directory for developers
As these files will be used for the buidling of the 3 manuals (NEMO, SI³ and TOP),
it is relevant to place them in a unique location of the repository and refer to with external definitions

14:49 Changeset [11124] by nicolasmartin

Editing of ametsoc.bst to generate hyperlinks for DOIs or URLs
New version of bibtool resource file:

Braces as entries delimiter
All entry types in lowercase (^@...)
Normalisation of pages field ([0-9]+--[0-9])
Deletion of url field if doi is here

Definition of fields order

sort.order =
{ * =
      # title     # chapter     # pages
      # journal   # booktitle   # edition # editor # series
      # volume    # number
      # author    # institution # school
      # year      # month
      # publisher # issn        # isbn
      # doi       # url
}

coding the format of citations keys

key.format =
{ %s(bibkey) # %-2n(author)_
     {
          %+5.1W(journal)
             # %0s(@book         ) { bk   } # %0s(@inbook       ) { ibk  }
             # %0s(@incollection ) { icol } # %0s(@inproceedings) { iprc }
             # %0s(@phdthesis    ) { phd  } # %0s(@techreport   ) { rpt  }
     }
  %2d(year)
}

14:22 Changeset [11123] by nicolasmartin

Modification of LaTeX subfiles accordingly to new citations keys

14:05 Changeset [11122] by nicolasmartin

Upload advanced version of the NEMO bibliography

Apply global pattern for citation keys: 1stauthor{.2ndauthor{.ea}}_{journal|type}year
Sorting entry fields wisely
Removal of redundancies ('doi'='url') by keeping only the DOI field
Manual editing for disambiguation with lowercase letter starting from the first item: *a, *b

12:31 Changeset [11121] by nicolasmartin

Fixes on BibTeX fields

Restoration of few missing entries from previous cleaning
Protection of some french names with "von" part
Use of the proper syntax for doubles quotes: `` ... ''
Addition of backslash for underscore character in URL

12:14 Changeset [11120] by nicolasmartin

Modification of the building process with dedicated build sub-folder

11:03 Changeset [11119] by rrenshaw

minor code fix

10:52 Ticket #2299 (Minor bug in PISCES) closed by cetlod

fixed: Done on v4.0 and trunk

10:51 Changeset [11118] by cetlod

Bugfix on sea-ice effect on production, see ticket 2299

10:50 Changeset [11117] by cetlod

Bugfix on sea-ice effect on production, see ticket 2299

10:38 Ticket #2299 (Minor bug in PISCES) created by cetlod

BE CAREFUL !!! Due to dynamic behaviour of this ticket creation page, it …

2019-06-14:

20:21 Changeset [11116] by nicolasmartin: Removing of unnecessary entries
20:17 Ticket #2298 (Bug fixes to OBS and ASM found when reviewing the documentation) created by djlea: BE CAREFUL !!! Due to dynamic behaviour of this ticket creation page, it …
20:13 Ticket #2297 (Updates to ASM and OBS documentation) created by djlea: ==== Context The documentation for OBS and ASM needs reviewing as it is …
19:25 Changeset [11115] by nicolasmartin: Fixed version with unused references
16:51 Changeset [11114] by cetlod: trunk:small bug fix in the previous bug correction, ticket #2296
16:49 Changeset [11113] by aumont: small bug fix in the previous bug correction
15:57 Changeset [11112] by mocavero: Update the chapter on reference configurations for 4.0 release, see #2216
15:55 Changeset [11111] by laurent: LB: skin temperature now used by ECMWF bulk algorithm, and can be xios-ed ; new module "SBC/sbcblk_skin.F90" ; all physical constants defined in SBC now moved to "DOM/phycst.F90"; all air-properties and other ABL functions gathered in a new module: "SBC/sbcblk_phymbl.F90".
15:43 Changeset [11110] by davestorkey: UKMO/NEMO_4.0_GO8_package branch: Enable product diagnostics uT, vT, wS etc. (as in GO6 package branch).
13:57 Changeset [11109] by cetlod: trunk:bug fix of the ticket #2296
13:41 Ticket #2296 (Bug in the computation of the degradation rate of GOC) closed by aumont: fixed
13:41 Changeset [11108] by aumont: bug fix of the ticket #2296
13:36 Ticket #2296 (Bug in the computation of the degradation rate of GOC) created by aumont: ==== Context In the new version of PISCES available with NEMO4.0, a new …
11:50 Changeset [11107] by frrh: Commit changes from Dan Copsey's sea ice heat coupling
flux fixes in branch:
branches/UKMO/dev_r5518_GO6_fix_zemp_ice_10681
revisions 11028:11088.

2019-06-13:

20:54 Changeset [11106] by nicolasmartin: Push a second review of NEMO manual from side-by-side edition of 2 previous versions (r11051 & r11052)
I will made a final review with the first upload of the new version (r11075) and will reduce significantly it as almost the half of the references are not used.
Would have save time by checking the unused entries before…
18:20 Changeset [11105] by dancopsey: Merged in changes from dev_merge_2017_GC_couple_pkg branch except for zotx1 and zoty1 changes in sbccpl.F90.
15:21 Changeset [11104] by dancopsey: Make coupling package branch

2019-06-11:

20:05 Ticket #1922 (Uninitialized variable in sbcapr.F90) closed by smueller: duplicate: This ticket has been superseded by ticket #2295.
19:44 Ticket #1922 (Uninitialized variable in sbcapr.F90) reopened by smueller: While the reported bug has been fixed in the release-3.6 version of the …
19:28 Ticket #2295 (Subroutine bdy_dta uses an uninitialised namelist parameter unless ...) created by smueller: ==== Context The bug reported in ticket #2235 is also present in the …
19:09 Ticket #2294 (Missing rewind on reference namelist for nambdy_tides) created by mdunphy: ==== Context When we have >1 open boundary, and when using …
18:06 Changeset [11103] by agn: Added new code to branch
16:38 Changeset [11102] by davestorkey: dev_r10721_KERNEL-02_Storkey_Coward_IMMERSE_first_steps_rewrite_time_filterswap : revert change committed by mistake.
16:10 Changeset [11101] by frrh: Merge changes from Met Office GMED ticket 450 to reduce unnecessary
text output from NEMO.
This output, which is typically not switchable, is rarely of interest
in normal (non-debugging) runs and simply redunantley consumes extra
file space.
Further, the presence of this text output has been shown to
significantly degrade performance of models which are run during
Met Office HPC RAID (disk) checks.
The new code introduces switches which are configurable via the
changes made in the associated Met Office MOCI ticket 399.
16:07 Changeset [11100] by agn: Properly undid premature check into release-4.0
15:59 Changeset [11099] by davestorkey: dev_r10721_KERNEL-02_Storkey_Coward_IMMERSE_first_steps_rewrite_time_filterswap : Updates and bug fixes. This version still doesn't pass all SETTE tests.
15:17 Changeset [11098] by agn: Undid premature check into release-4.0
14:59 Changeset [11097] by agn: corrected . or. byg in diahth.F90
14:59 Changeset [11096] by agn: diahth outputs now controlled only by xml
14:58 Changeset [11095] by agn: use ln_diahth in step_c1d.F90
14:58 Changeset [11094] by agn: complete merge of diahth.F90
14:58 Changeset [11093] by agn: original lot of changes to diahth.F90
14:58 Changeset [11092] by agn: modified namelist_ref to include ln_diahtth key
14:58 Changeset [11091] by agn: new diahth to work without key_diahth: changes in diahth.F90
14:58 Changeset [11090] by agn: original lot of changes to diahth.F90
14:36 Changeset [11089] by agn: Modernized diahth

2019-06-10:

17:37 Changeset [11088] by dancopsey: Set namelist entry to be false by default.
17:36 Changeset [11087] by dancopsey: Allow false value for namelist entry to be the default
16:55 Ticket #2293 (agn) created by agn: ==== Context The dia_hth routine in diahth.F90 still only works with a …

2019-06-09:

13:41 Changeset [11086] by laurent: LB: initial commit from trunk at r11085

2019-06-07:

12:59 Ticket #2292 (Bugs with adaptive vertical advection: 3) Courant number computation) created by jchanut: ==== Context Adaptive (based on courant number) vertical advection, …

2019-06-06:

17:39 Changeset [11085] by rrenshaw: code fixes
17:22 New reply on Skilled created by giuliabonino: [AGRIF] Intel build (with key_agrif) based on ORCA2_LIM seg faults
16:30 Changeset [11084] by davestorkey: UKMO/NEMO_4.0_old_tidal_mixing : Update to be relative to rev 11081 of NEMO_4.0_mirror.
16:29 Changeset [11083] by davestorkey: UKMO/NEMO_4.0_GO6_mixing : Update to be relative to rev 11081 of NEMO_4.0_mirror.
16:21 Changeset [11082] by davestorkey: UKMO/NEMO_4.0_GO8_package : update to be relative to 11081 of NEMO_4.0_mirror.
16:11 Changeset [11081] by davestorkey: UKMO/NEMO_4.0_mirror : update to be a copy of rev 11079 of release-4.0.
15:32 Changeset [11080] by jcastill: Latest changes from Jason

2019-06-05:

17:16 Ticket #2291 (Bugs with adaptive vertical advection: 2) Interaction with time splitting) created by jchanut: ==== Context Adaptive (based on courant number) vertical advection, …
16:48 Ticket #2290 (Bugs with adaptive vertical advection: 1) dynzdf.F90) created by jchanut: ==== Context Adaptive (based on courant number) vertical advection, …
16:18 Changeset [11079] by jchanut: #2284
16:17 Changeset [11078] by jchanut: #2284
16:14 Ticket #2289 (Edge bathymetry values are wrong in the OVERFLOW test case (at U-points)) closed by jchanut: fixed
16:13 Changeset [11077] by jchanut: Correct bathymetry at U-points, #2289
16:11 Changeset [11076] by jchanut: Correct bathymetry at U-points, #2289
16:07 Ticket #2289 (Edge bathymetry values are wrong in the OVERFLOW test case (at U-points)) created by jchanut: ==== Context Trivial bug in OVERFLOW test case: bathymetry computation at …
09:40 Ticket #2288 (BDY is not compatible with high order schemes) created by smasson: ==== Context BDY is not compatible with high order schemes (bilaplacien, …

2019-06-04:

18:16 Changeset [11075] by nicolasmartin: Submission of an intermediate version of NEMO bibliography
Manual merge of 2 existing BibTeX entries per each reference in order not to lose a field
It remains to make a check from the diff view under Trac or a diff tool and a final cleaning for indentation and new citations keys
17:47 Ticket #2287 (Bug in bdy with flather) closed by girrmann: fixed
17:46 Changeset [11074] by girrmann: dev_r10984_HPC-13 : bug fix and cleaning of flather, see #2287 and #2285
17:09 Developers/Good Practices/Usual Commands edited by nicolasmartin: (diff)
16:58 Developers/SVN Quick Reference created by nicolasmartin: Developers/SVN QuickReference → …
16:48 Developers/Good Practices edited by nicolasmartin: (diff)
16:46 Developers/Good Practices edited by nicolasmartin: (diff)
15:16 Changeset [11073] by girrmann: v4 : fix bug in flather for bdy, see #2287
15:14 Changeset [11072] by girrmann: trunk : fix bug in flather for bdy, see #2287
15:07 Ticket #2287 (Bug in bdy with flather) created by girrmann: ==== Context For eastern and northern boundaries (flagu = -1 and flagv = …
14:58 Changeset [11071] by girrmann: dev_r10984_HPC-13 : step 2, remove unneeded communications, see #2285

2019-06-03:

15:04 Changeset [11070] by rrenshaw: code fixes
12:23 Changeset [11069] by andmirek: ticket #2197 glob sum for parallel architecture
11:36 2019WP/HPC-12_Mocavero_mpi3 edited by andmirek: (diff)
11:35 2019WP/HPC-12_Mocavero_mpi3 edited by andmirek: (diff)

2019-05-29:

15:20 Changeset [11068] by dford: Branch for changes required for inclusion of spectral optics model (coupled via FABM).
11:34 Changeset [11067] by girrmann: dev_r10984_HPC-13 : new implementation of lbc_bdy_lnk in prevision of step 2, regroup communications, see #2285

2019-05-28:

18:00 Changeset [11066] by rrenshaw: changes to add regional means output and correction for section transports
16:54 Changeset [11065] by rrenshaw: new branch for changes to branch for AMM7/AMM15 3.6 suite
13:10 Changeset [11064] by dford: Deleting branch as changes merged back.
13:08 Changeset [11063] by dford: Add missing lbc_lnk and option to relax chlorophyll to climatology. See Met Office utils ticket 216.
13:06 Changeset [11062] by dancopsey: Fix compile issues for when I am running GO6+MEDUSA.
12:52 Changeset [11061] by dancopsey: Fix compile issues for when I am running GO6+MEDUSA.

2019-05-27:

15:20 Changeset [11060] by nicolasmartin

Backup a merged bibliography with duplicates commented
Bib Tool? determines double entries from successive identical citation keys so
the procedure was in 2 steps

Process r11051 & r11052 versions of NEMO_manual.bib to have the same pattern for citation key
Merge the 2 versions with Bib Tool? configured for duplicate checking:
bibtool -d -- preserve.keys=on -- sort=on input_files -o output_file

It remains to clean the bibliography by deleting the doubles.

13:34 Ticket #2286 (Passive tracer vertical diffusivity in trazdf.F90 (PISCES offline)) created by mgali

==== Context When running PISCES offline simulations in 1D, I noticed …

13:05 Changeset [11059] by girrmann

dev_r10984_HPC-13 : simplify bdyini.F90 following extension of bdy detection, see #2285

2019-05-24:

21:41 Changeset [11058] by nicolasmartin

Add a configuration file as resource for Bib Tool? to define standard format for our bibliographies
After the import of several new versions of references, I found some discrepancies that it was easy to address with Bib Tool?

Set a common pattern for citation key: author1[_authors2[_ea]]_journalyear
Suppress a good bunch of trivial fields to reduce the size of the biblio in the different exports address chapter institution isbn issn issue keywords language note number organisation pages pdf series school type volume Open to discussion but to me a DOI entry is sufficient if someone wants more information
Prevent the use of tab for fields indentation, better readability for the bib file on Trac browser or in the output of SVN diff
Apply the following order of fields for every entry author # title # booktitle # journal # publisher # editor # year # month # doi # url

To apply the rules to a Bib Tex? file, run

bibtool -r bibtool.rsc input_file -o output_file

17:36 Changeset [11057] by davestorkey

2019/dev_r10721_KERNEL-02_Storkey_Coward_IMMERSE_first_steps_rewrite_time_filterswap : Rewrite time filtering of tracers and SSH. This version now bit compares with the base code for ORCA1 starting from a restart.
To do:

Check that it bit compares with an Euler timestep.
Full SETTE tests.
Check that it compiles with C1D.
Check that TOP works (see 1).

15:52 Changeset [11056] by girrmann

dev_r10984_HPC-13 : Bugfix following [11048], see #2285

14:57 Changeset [11055] by dancopsey

Put the switch back in again.

14:54 Changeset [11054] by dancopsey

Put the switch back in again.

12:53 Changeset [11053] by davestorkey

2019/dev_r10721_KERNEL-02_Storkey_Coward_IMMERSE_first_steps_rewrite_time_filterswap : Merge in latest changes from main branch and finish conversion of "h" variables. NB. This version still doesn't work!

12:05 Changeset [11052] by nicolasmartin

Upload draft version for new NEMO biblio
This is the result of the publications collecting on Cross Ref?.
By mistake, previous commit was supposed to be the one but it was just a small edition.

11:50 Changeset [11051] by nicolasmartin

Backup intermediate version before further minor modifications

10:27 Changeset [11050] by davestorkey

2019/dev_r10721_KERNEL-02_Storkey_Coward_IMMERSE_first_steps_rewrite_time_filterswap : Rewrite dynnxt.F90 and rename dynatf.F90 with time level swapping in stp. This doesn't work yet but committing for the record before I merge in Andrew's changes to the main branch.

10:22 Changeset [11049] by girrmann

dev_r10984_HPC-13 : CYCLE instruction is not systematic anymore, computation is done on the halo whenever possible and overwritten by lbc_bdy instruction, see #2285

2019-05-23:

18:36 Changeset [11048] by girrmann: dev_r10984_HPC-13 : Step 1, boundary is now detected all over the local domain, this does not change the result. Improve bdy treatment for bdy_rnf in bdytra.F90, this changes the result when keyword runoff is specified in namelist
18:26 Changeset [11047] by acc: 2019/dev_r10721_KERNEL-02_Storkey_Coward_IMMERSE_first_steps : Add missing initialisation of time-level indices for the AGRIF zooms. This enables AGRF SETTE tests to be reactivated but initial tests suggest minor reproducibility and restartability issues. These tests have always been sensitive to optimisation levels on the NOC cluster though so need an independent test on another system
18:02 Changeset [11046] by dancopsey: Take the switch back out again. It was decided not that this is a bug so should be automatically picked up.
17:58 Changeset [11045] by dancopsey: Take the switch back out again. It was decided not that this is a bug so should be automatically picked up.
17:13 Changeset [11044] by girrmann: dev_r10984_HPC-13 : missing part of [11024], see #2285
15:51 Changeset [11043] by nicolasmartin: Several fixes for the LaTeX compilation of the manuals
15:46 Changeset [11042] by girrmann: dev_r10984_HPC-13 : update with trunk at revision 11041
14:28 Changeset [11041] by clem: debug corner points for ice bdy
14:27 Changeset [11040] by clem: debug corner points for ice bdy
09:38 Changeset [11039] by rrenshaw: code fix

2019-05-22:

22:44 Changeset [11038] by rrenshaw

code fixes

21:03 Changeset [11037] by nicolasmartin

Review entries of TOP bibliography
Continuation of the work to complete the BibTeX entries with the help of
DOI resolver for the retrieval and Cross Ref? API for the identification.

Add byrd-co2-2008.txt & edc-co2.txt for information which give the original
references for using particular CO2 data set from NOAA-NCEI

15:44 Changeset [11036] by acc

2019/dev_r10721_KERNEL-02_Storkey_Coward_IMMERSE_first_steps : Remove now redundant TARGET qualifiers from oce and dom_oce arrays

15:10 Changeset [11035] by frrh

Apply changes from UKMO GMED ticket 453 to fix OOB bugs in
the calculation of diagnostic tnpeo and to apply the correct calculation
as per the current NEMO vn4.0 and 3.6_STABLE code bases, in place of the
existing incorrect formula. Thus, tnpeo diagnostic values will change
following this update.
Model prognostics and eveolution are unaffected.

2019-05-21:

22:42 Changeset [11034] by nicolasmartin

Add a simple shell script to build the user guide
It checks Python deps, cleans the previous build and exports the guide in HTML format

22:36 Changeset [11033] by nicolasmartin

Modify the shell code in order to run as expected on different OS (Linux or MacOS)

22:34 Changeset [11032] by nicolasmartin

Fix few issues in TOP bibliography

21:41 Changeset [11031] by nicolasmartin

Update the chapters following the new keys for BibTeX entries

20:42 Changeset [11030] by nicolasmartin

Reconstruction of SI³ bibliography in bib format
Use of biblio Emacs package to retrieve BibTeX entries from

existing DOIs in the bbl file
DOIs identified by searching from Cross Ref? API
classical request on web search engine (few)

2 references are missing (+ one paper is submitted): TEOS-10 and MaykutThorndike73 and the file was then processed with bibtool for reformatting.
I plan to reproduce this procedure for reviewing the other bibliographies (NEMO & TOP) and the references in the user guide.

18:03 Changeset [11029] by dancopsey

Upgraded previous version of this branch.

17:55 Changeset [11028] by dancopsey

Branch off the teh GO6 package branch at revision 10681

17:33 Changeset [11027] by acc

2019/dev_r10721_KERNEL-02_Storkey_Coward_IMMERSE_first_steps : Final renaming conversions and removal of temporary pointers. All non-AGRIF SETTE tests are passing (including test cases). AGRIF tests compile and link but segment on first call to Agrif_Regrid. NST changes are therefore a work in progress but nothing is broken that was not broken before

16:54 Changeset [11026] by nicolasmartin

Apply previous for SI³ specific namelists

16:51 Changeset [11025] by nicolasmartin

Set mime-type to text/x-fortran to all namelists

16:07 Changeset [11024] by girrmann

dev_r10984_HPC-13 : imrpove bdy treatment ssh and neumann, see #2285

12:21 Changeset [11023] by nicolasmartin

Fix typos with comma followed by 'and' in author entries

11:49 Changeset [11022] by nicolasmartin

Fix the relative path for the bibliography style file to apply it globally

09:54 Changeset [11021] by davestorkey

Branch of a branch to rewrite time filtering and swapping as part of KERNEL-02 action. Branch of a branch so as not to break bit comparison tests in main branch. Will merge back when happy.

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