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and

matching tags

2019-10-30:

17:09 Changeset [11839] by andmirek

Ticket #2323 correction to previous commit

16:26 Changeset [11838] by laurent

Typo in demo_cfgs.txt

15:10 Changeset [11837] by andmirek

ticket #2323 read SI3 restart with XIOS

14:54 2020WP edited by clevy
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14:52 2020WP edited by clevy
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14:51 2020WP edited by clevy
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14:47 2020WP edited by clevy
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14:08 Changeset [11836] by acc

Branch 2019/dev_r10721_KERNEL-02_Storkey_Coward_IMMERSE_first_steps. Merge remaining trunk changes from 11742 to 11830

11:08 2020WP edited by clevy
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09:59 2020WP edited by clevy
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09:58 2020WP edited by clevy
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09:57 New topic on Beginner created by poddo
[AGRIF_DEMO] NEMO 4 (4.0.1) CFL violation
09:47 2020WP edited by clevy
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09:45 2020WP edited by clevy
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09:44 2020WP edited by clevy
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09:43 2020WP edited by clevy
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2019-10-29:

19:21 Changeset [11835] by mathiot

ENHANCE-02_ISF_nemo: change required to pass sette test

18:55 Changeset [11834] by laurent

Adding "EXPREF" directory for "STATION_ASF" new test-case.

18:44 Changeset [11833] by laurent

Adding "EXPREF" directory for "STATION_ASF" new test-case.

18:42 New reply on Beginner created by poddo
[GCC] Compilation of AGRIF_DEMO fails
18:21 Changeset [11832] by dancopsey

Convert evap_ice from grid box means to sea ice means

18:14 Changeset [11831] by laurent

Update the branch to r11830 of the trunk!

17:51 Changeset [11830] by acc

Branch 2019/dev_r10721_KERNEL-02_Storkey_Coward_IMMERSE_first_steps. Merge changes to doc from trunk r10740 through r11740

17:30 2020WP edited by clevy
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17:22 2020WP edited by clevy
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17:12 2020WP edited by clevy
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16:56 Changeset [11829] by acc

Branch 2019/dev_r10721_KERNEL-02_Storkey_Coward_IMMERSE_first_steps. update of mergeinfo property on branch root to correctly record the merge activity from trunk 10721:11740

16:30 Changeset [11828] by jpalmier

DIRTY temporal debug

16:03 Changeset [11827] by jchanut

#2222, corrections to interpolation within sponge

15:11 Changeset [11826] by laurent

SBCBLK-related physical constants all moved into "sbcblk_phy.F90".

14:47 Changeset [11825] by dford

New branch to slightly relax the Kw660 input check performed for MEDUSA, when running with FOAM.

14:13 Changeset [11824] by acc

ranch 2019/dev_r10721_KERNEL-02_Storkey_Coward_IMMERSE_first_steps. Updates to top level rst files to align with trunk changes between 10721 and 11740. This commit brings this branch up-to-date with the trunk at revision 11740 with the exception of the doc directory which has not been touched on this branch.

12:00 Changeset [11823] by mathiot

rm useless USE statement, option compatibility test + minor changes

11:41 Changeset [11822] by acc

Branch 2019/dev_r10721_KERNEL-02_Storkey_Coward_IMMERSE_first_steps. Sette tested updates to branch to align with trunk changes between 10721 and 11740. Sette tests are passing but results differ from branch before these changes (except for GYRE_PISCES and VORTEX) and branch results already differed from trunk because of algorithmic fixes. Will need more checks to confirm correctness.

11:08 Ticket #2324 (Incorrect array passed to lbc_lnk in trcbdy.F90) closed by acc
fixed: In 11821: […]
11:08 Changeset [11821] by acc

Small correction to trcbdy.F90. This fixes #2324

10:50 Changeset [11820] by acc

Small correction to trcbdy.F90. See #2324

10:48 Ticket #2324 (Incorrect array passed to lbc_lnk in trcbdy.F90) created by acc
==== Context lbc_lnk improvements made just before the 4.0.1 release have …
10:25 Changeset [11819] by jchanut

Fixes to compile with gcc 9.2

10:23 Changeset [11818] by jchanut

Fixes to compile with gcc 9.2

2019-10-28:

17:19 Changeset [11817] by laurent

A few rogue "STOP"s become "ctl_stop"!

17:10 Changeset [11816] by laurent

A few rogue "STOP"s become "ctl_stop"!

12:01 Changeset [11815] by andmirek

Branch for Ticket #2323

11:59 Ticket #2323 (read/write SI3 restart with XIOS) created by andmirek
Currently each processor reads and writes restart. This development will …
11:18 Changeset [11814] by smasson

trunk: fix typo in namsbc_cpl

11:18 Changeset [11813] by smasson

release-4.0.1: fix typo in namsbc_cpl

11:14 Changeset [11812] by smasson

trunk: add missing USE phycst in icedyn_adv_pra, needed when not using key_iomput

11:13 Changeset [11811] by smasson

release-4.0.1: add missing USE phycst in icedyn_adv_pra, needed when not using key_iomput

11:11 Changeset [11810] by andmirek

Ticket #2255. Add grids definitioh for grid_T_SFC gznl_T_2D gznl_T_3D gznl_W_3D

2019-10-26:

14:15 Changeset [11809] by smueller

Inclusion of river runoff (arrays rnf and rnf_b of module sbc_oce) in the nonlinear-model trajectory used by NEMOTAM; elimination of the use of an uninitialised array (array rnf_b of module sbc_oce) in the reconstruction of the vertical velocity field of the nonlinear-model trajectory used by NEMOTAM (fix for the bugs described in ticket #1876)

2019-10-25:

18:11 Changeset [11808] by nicolasmartin

Change token to Name.Constant for format declaration

18:08 Changeset [11807] by nicolasmartin

Change colors for CPP directives and modules/routines names for readability

17:43 Changeset [11806] by smueller

Enabling of the selection of the flux formulation as surface boundary condition (ln_flx set to .TRUE. in namelist namsbc) and elimination of the use of an unassigned variable (variable nsbc of module sbcmod_tam) in NEMOTAM (application of the patch attached to ticket #1738)

17:25 Changeset [11805] by gsamson

remove Mercator old cluster (Naviti) arch from SETTE

17:25 Changeset [11804] by laurent

Use of "TURB_FLUXES@…" inside sbcblk.F90, positive latent HF & positive cool-skin temperature now allowed!

17:23 Changeset [11803] by nicolasmartin

Import emacs style from Pygments for future modifications

17:15 Changeset [11802] by jchanut

#2222, 1) add linear interpolation in vremap module.
2) Switch remapping of viscosity from polynomial to linear.
3) Move to truly volume weighted averages for parent to child update.

17:13 Changeset [11801] by nicolasmartin

Add some syntax patterns to highlight

  • Modules and routines declarations with USE and CALL statements (Name.Function token)
  • Output format with WRITE (Name.Label)
  • CPP simple directives (define|else|endif|if|ifdef|undef)
17:06 Changeset [11800] by gsamson

adjust AGRIF decomposition domains (from 32 to 16 procs) in SETTE REPRO tests to avoid zoom domain sizes < 8 pts (see #2322 for details)
→ all SETTE ref configs tests OK with trunk @ r11761 in O0 at Mercator

16:27 Changeset [11799] by mocavero

Update the branch to v4.0.1 of the trunk

16:13 2020WP edited by mikebell
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15:52 2020WP edited by nemo
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15:51 Changeset [11798] by dancopsey

Merged in Clem's suggested changes.

15:38 Ticket #2322 (MInimum size of mpp subdomain uncorrectly set for AGRIF zooms) created by jchanut
==== Context AGRIF does not work for too small mpp subdomains (defined as …
15:37 2020WP edited by nemo
(diff)
15:36 Changeset [11797] by andmirek

Branch for ticket #2255

14:54 Changeset [11796] by cetlod

Modifying sette ref configutation script according to new developments

14:48 Changeset [11795] by cetlod

Creating sette specific branch for PISCES_LBC in TOP

14:16 Page Templates/Workplan/Action edited by nemo
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12:34 Ticket #2321 (Broken on the fly vertical interpolation of open boundary data) closed by jchanut
fixed
12:26 Changeset [11794] by jchanut

#2321, missing init for online vertical interpolation of bdy data

12:25 Changeset [11793] by jchanut

#2321, missing init for online vertical interpolation of bdy data

12:16 Changeset [11792] by gsamson

update namelist_ice_cfg in AGRIF_DEMO cfg as in ORCA2_ICE_PISCES cfg to pass AGRIF-ORCA2 corruption tests in SETTE

12:15 2020WP edited by clevy
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12:14 Page Templates/Workplan/Action edited by nemo
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12:10 Page Templates/Workplan/Action edited by nemo
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12:01 Page Templates/Workplan/Action edited by nemo
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11:59 Developers/Dev Process edited by nemo
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11:59 Tag change on Developers/Dev Process by nemo
Tags dev added
11:45 Developers/Dev Process edited by nemo
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11:41 Ticket #2321 (Broken on the fly vertical interpolation of open boundary data) created by jchanut
==== Context Online vertical interpolation of boundary data in fldread …
10:35 Changeset [11791] by jchanut

#2222, scalar not initialized outside of conditional statement

2019-10-24:

19:04 2020WP edited by clevy
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19:04 2020WP edited by clevy
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17:40 Changeset [11790] by andmirek

Ticket #2320 correction for SAS

17:20 Changeset [11789] by dancopsey

Add missing divide by icea fraction to sea ice fluxes

15:06 Changeset [11788] by nicolasmartin

Cosmetic changes

14:56 2020WP edited by nemo
(diff)
14:53 Page Templates/Workplan edited by nemo
(diff)
14:48 Tag change on System Team/Agenda/2019-12-10 by nemo
Tags 2019, MP added; VC removed
14:40 2020WP created by nemo
14:40 Tag change on 2020WP by nemo
Tags 2020, WP added
14:33 Tag change on System Team/Agenda/2019-10-23 by smasson
Tags VC added
14:24 Page Templates/Workplan edited by nemo
(diff)
13:46 Changeset [11787] by andmirek

Ticket #1840, add fix related to optional argument from ticket 2270

13:46 Ticket #2270 (segfault in sbcdcy.F90) closed by andmirek
fixed: Make fix part of the ticket #1840, where optional arguments are fixed in …
13:05 Changeset [11786] by andmirek

Ticket #1840, changes in iom.F90

12:38 Changeset [11785] by laurent

Fixes to prevent FPE-related errors at runtime (masked regions).

11:25 Changeset [11784] by andmirek

Branch for ticket #1840

11:00 Ticket #2062 (modification of Fcheck_archfile script) closed by andmirek
fixed: Already in the trunk.
10:37 Changeset [11783] by andmirek

Ticket #2320: set nn_print to 3 in namelist_ref

10:30 Changeset [11782] by andmirek

Ticket #2320 print levels in ICE/OCE

2019-10-23:

21:02 Changeset [11781] by nicolasmartin

Improve Fortran lexer by creating distinct states for comment, boolean, operator and punctuation
Respectively cmt, bool, opr & punc.

The regexps were from the 'core' state which was reduced to statements, data types and builtins
The punctuation state has evolved to handle & character more wisely:
highlight only if followed by whitespace (continuation line), if not

Tested with tracers.rst which includes routine, namelist and code-block.
Still a small issue with on a specific namelist.

18:08 Changeset [11780] by nicolasmartin

Define fortran as the default language for code highlighting
So we only have to define the language in a code-block directive for others.

18:03 Changeset [11779] by nicolasmartin

Create 'namelist' state to handle highlighting of this particular statement
Probably not optimized but it works.

The line have to start with the expecting syntax for declaring a namelist &[a-z][\w$]*
The token type that seems appropriate is the namespace (Name.Namespace).
The declaration of variables, arrays and data structures are taken into account in the same regexp
with bygroups
The slash terminator to end the namelist will also be colorized to make some kind of an envelope
surrounding the variables and arrays.

18:00 Changeset [11778] by jpalmier

debug 4

17:49 Changeset [11777] by acc

Branch 2019/dev_r10721_KERNEL-02_Storkey_Coward_IMMERSE_first_steps. Begin merge prepartions by merging changes on the trunk since this branch creation. Do this in staged commits in case of issues. First stage is to merge and commit changes to cfgs directory (cd cfgs; svn merge -r 10721:11740 svn+ssh://acc@forge.ipsl.jussieu.fr/ipsl/forge/projets/nemo/svn/NEMO/trunk/cfgs ./)

17:39 Changeset [11776] by jpalmier

debug 3

16:41 Changeset [11775] by laurent

LB: solid updates+improvements of cool-skin/warm-layer capabilty of COARE and ECMWF bulk algorithms!

16:30 Changeset [11774] by smueller

Correction of the state-variable advancement in adjoint mode (application of the patch attached to ticket #1443)

16:04 Changeset [11773] by dancopsey

Change zbeta to 0.13

16:04 Changeset [11772] by laurent

LB: solid updates+improvements of cool-skin/warm-layer capabilty of COARE and ECMWF bulk algorithms!

15:04 Changeset [11771] by acc

Branch 2019/dev_r10721_KERNEL-02_Storkey_Coward_IMMERSE_first_steps. Updates to MY_SRC files in CANAL test case (previously untested on this branch).

14:48 Tag change on System Team/Agenda/2019-10-24 by smasson
Tags VC added
14:02 Changeset [11770] by smueller

Removal of unused node-factor formulae (ticket #2194)

12:08 Changeset [11769] by jchanut

#2222 1) change sponge definition to add time relaxation in addition to Laplacian diffusion (WRF like): Add new parameters in namelist.
2) Reduce sponge width by 1 child grid point to match coarse grid cells.

11:58 Changeset [11768] by smueller

Addition of an alternative tidal-constituent parameter set (ticket #2194)

11:58 Changeset [11767] by nicolasmartin

Modify lexer to recognize all logical operators
Move punctuation rule at the end of 'core' token to make operator rule working on .and., .not. & .or.

11:45 Changeset [11766] by nicolasmartin

Add ENDIF in keywords, remove 'and', 'or' & 'not' from builtins

11:11 Changeset [11765] by nicolasmartin

Import fortran lexer from Pygments for future changes

2019-10-22:

19:57 Changeset [11764] by smueller

Addition of optional tidal-potential output (ticket #2194)

18:18 Changeset [11763] by acc

Branch 2019/dev_r10721_KERNEL-02_Storkey_Coward_IMMERSE_first_steps. Update to WAD files that were previously untested on this branch

17:11 Ticket #2309 (print statements in iceberg model) closed by andmirek
fixed: fixed in revision 11536.
15:42 Changeset [11762] by dancopsey

Enable outputting of sea ice volume and sea ice conductivity (as provided by the coupler).

12:02 Changeset [11761] by nicolasmartin

Create unpub folder for unpublished READMEs (displayed with make drafthtml)

2019-10-21:

21:17 Changeset [11760] by jchanut

#2222, mistake in previous commit

18:24 Changeset [11759] by nicolasmartin

Review README for data assimilation

18:19 Changeset [11758] by acc

Branch 2019/dev_r10721_KERNEL-02_Storkey_Coward_IMMERSE_first_steps. Removal of unnecessary cyclic dependancy between oce_trc and step and update to previously untested BENCH MY_SRC files

17:57 Developers/Good Practices edited by smueller
(diff)
17:20 Changeset [11757] by andmirek

Ticket #2320 create branch

17:09 Ticket #2320 (Improvements in text output) created by andmirek
==== Context NEMO writes a lot of text diagnostics (some of the files are …
16:59 Changeset [11756] by davestorkey

UKMO/NEMO_4.0.1_GO8_package : Bug fix for previous change.

16:47 Changeset [11755] by davestorkey

UKMO/NEMO_4.0.1_GO8_package :

  1. Make names consistent between Basic and CMIP6 standard diagnostics packages.
  2. Add bottom temperature and salinity to standard diagnostics packages.
16:25 Changeset [11754] by nicolasmartin

Review README for coupling

16:21 Changeset [11753] by nicolasmartin

Review README for AGRIF

16:08 Changeset [11752] by nicolasmartin

Improve the view of todo items by adding the list in the TOC tree

15:58 Changeset [11751] by nicolasmartin

Review README for tools

15:55 Changeset [11750] by davestorkey

UKMO/NEMO_4.0.1_old_tidal_mixing : science change.

15:48 Changeset [11749] by marc

Fix to OPA_SRC/TRD/trdtrc.F90, so I can run just the physical ocean with Dr Hook

15:27 Changeset [11748] by davestorkey

UKMO/NEMO_4.0.1_GO6_mixing : science change.

15:21 Changeset [11747] by nicolasmartin

Review README for diagnostics

15:10 Changeset [11746] by davestorkey

UKMO branch to reinstate old Simmons et al tidal mixing scheme at NEMO 4.0.1 to compare with new scheme.

15:00 Changeset [11745] by nicolasmartin

Create symbolic link setup.rst to README in ./src/OCE/USR

14:59 Changeset [11744] by davestorkey

UKMO branch to implement GO6 option for nn_htau.

14:57 Changeset [11743] by nicolasmartin

Review README for configuration setup

14:37 Changeset [11742] by davestorkey

UKMO/NEMO_4.0.1_GO8_package :

  1. Bug fixes.
  2. Temporarily revert masking of sea ice fields at non-icy ocean points because this doesn't work with XIOS 2.0.
12:26 Changeset [11741] by jchanut

#2222: correct definition of parent vertical grid on the child domain to perform vertical interpolation at boundaries. Use additionnal parent depths and number of levels arrays interpolated on the child grid domain to do so.
Correction of vertical interpolation of viscosity remains to be done as well as duplication of changes for passive tracers.

10:55 Changeset [11740] by jchanut

#2222, typo in comment

10:49 Changeset [11739] by jchanut

#2222, make possible vertical coordinate change with VORTEX (child vertical grid spacing chosen in namelist) + fix to compile VORTEX without key_AGRIF

09:34 Changeset [11738] by marc

The Dr Hook changes from my perl code.

2019-10-18:

20:13 Changeset [11737] by smueller

Addition of terdiurnal components to the computation of the tidal potential (ticket #2194)

19:53 Changeset [11736] by nicolasmartin

Remaining modified files

19:50 Changeset [11735] by nicolasmartin

Review README for test cases (a gif file mentioned to illustrate CANAL is missing)

18:46 Changeset [11734] by nicolasmartin

Review README for reference confgiurations

18:17 Changeset [11733] by jpalmier

more debug

18:10 Changeset [11732] by clem

update trunk from #11730

18:06 Changeset [11731] by clem

update trunk from #11729

17:47 Changeset [11730] by clem

last commit: avoid division by 0 occuring on some rare occasions (CMMC and ECMWF issues). It might be machine dependant.

17:44 Changeset [11729] by clem

last but one commit: put back aEVP as a default rheology but force orca2 to use EVP instead

17:27 Changeset [11728] by jpalmier

debug

17:19 Changeset [11727] by nicolasmartin

Crop caption for AGRIF_DEMO illustration

16:49 Changeset [11726] by jpalmier

add Changes to enable Alkalinity geo-ingeneering tests within MEDUSA

16:38 Changeset [11725] by nicolasmartin

Add NOAA picture of PAPA ocean station

16:34 Changeset [11724] by nicolasmartin

Add image of AMM domain bathymetry extract from Enda's reference paper

14:33 Changeset [11723] by nicolasmartin

Review of INSTALL.rst

13:51 Changeset [11722] by smueller

Removal of component nutide, which mirrors component nt, from variables of derived data type tide (ticket #2194)

13:46 Changeset [11721] by jpalmier

Create branch for surface Alkalinity runs

12:58 Changeset [11720] by francesca

add halo managment file- ticket #2009

12:52 Changeset [11719] by francesca

add extra halo support- ticket #2009

12:03 Changeset [11718] by nicolasmartin

Rename symlinks to rst files
Shortening the internal link syntax with :doc: and making it much readable

11:05 Changeset [11717] by davestorkey

UKMO/NEMO_4.0.1_GO8_package: copy over changes from NEMO_4.0_GO8_package branch.

10:50 Changeset [11716] by davestorkey

UKMO GO8 package branch relative to NEMO 4.0.1 release.

10:43 Changeset [11715] by davestorkey

UKMO/NEMO_4.0.1_mirror : Remove SVN keywords.

10:26 Changeset [11714] by davestorkey

Mirror of NEMO 4.0.1 release in UKMO branch with SVN keywords removed. To form base revision for UKMO builds.

2019-10-17:

17:49 Changeset [11713] by nicolasmartin

Revamp TOP README and implement a TODO list
Review tracers.rst by adding snippets of source files
Add drafthtml target for Makefile related to draft building tag for sphinx-build to
display todo items at the top of the guide homepage

Misc:

  • Use dedicated :file: role instead of ... for file or directory
  • Update BibTeX entries of NEMO reference publications by using :title: role
  • Dump of RELEASE_NOTES.rst
  • New file todos.rst to list all items declared with todo directive
  • Modify conf.py to add a conditional test for draft tag
14:10 Changeset [11712] by nicolasmartin

in line with the previous commit, remove the same external definition on dev branches

12:06 Changeset [11711] by nicolasmartin

Remove external definition to bibtool.rsc for trunk and 4.0.1

11:54 Changeset [11710] by cetlod

New branch for PISCES-QUOTA improvment see ticket #2319

11:48 Ticket #2319 (Create dev branch for PISCES-QUOTA improvments) created by cetlod
BE CAREFUL !!! Due to dynamic behaviour of this ticket creation page, it …

2019-10-16:

20:57 Changeset [11709] by nicolasmartin

Choose a more appropriate name to identify the starting space to take the first steps as developer

Instead of collecting one by one your branches with several checkouts,
I suggest to download this developer directory to install a lightweight but working development environment in order to handle all your developments in one local working copy.

$ svn co http://forge.ipsl.jussieu.fr/nemo/svn/utils/developer

Then run the shell script install_dev_env.sh to do once for all a single checkout from
the SVN repository

$ ./install_dev_env.sh [ID]        # Create './NEMO_dev'  folder mimicking '/NEMO' on the repo
$                                  # (development of the NEMO core with 'trunk', 'branches' & 'releases'
$ ./install_dev_env.sh repo [ID]   # Create './NEMO_repo' folder mimicking the entire repo (/)
$                                  # (including source code defined as externals: AGRIF, tools, etc...)

In any case, the trunk and the latest release will be downloaded entirely.
Add your developer username (ID) to already have the right URL scheme for committing:
svn+ssh://... instead of default http://... (no need to launch svn sw --relocate ... later).

From that, the SVN operations will be much simpler with UNIX-like SVN cmds (svn {cp,ls,mv,rm} ...) before pushing the changes to the repository with the usual svn ci ....
To know how to manage your working copy (create, download and delete a branch), see README at the root.

11:13 Changeset [11708] by nicolasmartin

z

11:05 Changeset [11707] by nicolasmartin

Review of the rst content
In short, new citations.rst to have a distinct page for NEMO references and
an update of the global directives

10:51 Changeset [11706] by nicolasmartin

Update files to be compliant with Python 3 (Python 2 no longer available)
The compilation of the guide is no longer easy with Python 2 with the need of virtual env to
downgrade some dependencies.
Last but not least, Python 2 support will expire by the end of the year.

2019-10-15:

19:58 Changeset [11705] by nicolasmartin

Updating of the script with some improvments

15:44 New reply on Interfaces created by atb299
[AGRIF] "Child Bathymetry is not correct near boundaries"
15:34 Users/Homepage/News edited by clevy
(diff)
15:31 Users/Agenda/2019-10-15 created by clevy

2019-10-14:

18:54 Changeset [11704] by smueller

Expansion of include file tide.h90 to provide a choice of alternative (currently identical) tidal-constituent parameter sets during code preprocessing (ticket #2194)

18:33 Changeset [11703] by nicolasmartin

Update as well the manual namelists

17:51 Changeset [11702] by nicolasmartin

Restore default path for Font Awesome? using in the manual compilation

17:42 Changeset [11701] by nicolasmartin

Remove DOI badge from cover page (unarchived versions for time being) and 'DRAFT' watermark

17:05 Changeset [11700] by nicolasmartin

Revert few previous updates on namelists due to the use of the same name between NEMO and SI3
(namdyn_adv and namsbc)

16:33 Changeset [11699] by nicolasmartin

Update namelist blocks included in the NEMO manual

16:25 Changeset [11698] by nicolasmartin

Modify the release version accordingly (trunkrelease-4.0.1)

16:12 Changeset [11697] by nicolasmartin

Creation of NEMO 4.0.1
The externals definitions have been updated accordingly: replace @HEAD with the last revision
made on the particular sub-item
AGRIF is a special case: we have decided to reproduce the same organisation of /NEMO/releases so
the definition refers to the corresponding sub-branch in /vendors/AGRIF/release-4.0.1 to
the revision of its creation

15:53 Changeset [11696] by nicolasmartin

Creation of AGRIF sub-branch for NEMO 4.0.1

15:00 Changeset [11695] by nicolasmartin

Remove useless files for index styling

14:54 Changeset [11694] by nicolasmartin

Fix to compilte TOP manual

14:53 Changeset [11693] by nicolasmartin

Macros renaming

2019-10-12:

16:08 Changeset [11692] by francesca

Update branch to integrate the development starting from the current v4.01 ready trunk

00:07 Changeset [11691] by agn

added OSMOSIS figure

2019-10-11:

19:05 Changeset [11690] by nicolasmartin

Update chapters according to previous commit

19:03 Changeset [11689] by nicolasmartin

Cleaning and renaming for readability
Apply the same rule from the LaTeX labels with the chapter prefix in the name of the figures
Put orphan files in unused subfolder

17:59 Changeset [11688] by nicolasmartin

Load grffile package to avoid import issue with file extension

16:56 Changeset [11687] by nicolasmartin

Temporary solution to solve LaTeX compilation issue with \includegraphics while waiting for TeXLive fix
For reference, see https://github.com/MiKTeX/miktex-packaging/issues/131

00:37 Changeset [11686] by agn

Font Awesome? fix for texlive on Mac

00:16 Changeset [11685] by agn

added OSMOSIS documentation to chap_ZDF.tex

00:16 Changeset [11684] by agn

chap_ZDF.tex now compiles

00:16 Changeset [11683] by agn

Monday morning

00:16 Changeset [11682] by agn

Sunday

00:15 Changeset [11681] by agn

Wednsday's changes

00:15 Changeset [11680] by agn

Thursday

00:15 Changeset [11679] by agn

Wednesday's additions

00:15 Changeset [11678] by agn

Tuesday's additions

00:15 Changeset [11677] by agn

added structure figure

00:15 Changeset [11676] by agn

Few more changes tp chap_ZDF.tex

00:15 Changeset [11675] by agn

started on flux-gradient relationship

00:15 Changeset [11674] by agn

start of OSMOSIS docs

2019-10-10:

17:24 Changeset [11673] by nicolasmartin

Fix missing LaTeX pkgs

12:32 Changeset [11672] by laurent

LB: "sbcblk_skin_coare.F90" now relies on "sbcdcy.F90" (modified) to know dawn/dusk time

11:55 user/nicolasmartin/Commit Message edited by nicolasmartin
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11:45 user/nicolasmartin/Commit Message edited by nicolasmartin
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11:42 user/nicolasmartin/Commit Message edited by nicolasmartin
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11:39 user/nicolasmartin/Commit Message created by nemo

2019-10-09:

15:02 Changeset [11671] by acc

Branch 2019/dev_r11613_ENHANCE-04_namelists_as_internalfiles. Final, non-substantive changes to complete this branch. These changes remove all REWIND statements on the old namelist fortran units (now character variables for internal files). These changes have been left until last since they are easily repeated via a script and it may be preferable to use the previous revision for merge purposes and reapply these last changes separately. This branch has been fully SETTE tested.

14:52 Changeset [11670] by acc

Branch 2019/dev_r11613_ENHANCE-04_namelists_as_internalfiles. Final substantive change to enable this branch to work with AGRIF. Most changes have occurred on an AGRIF development branch: /vendors/AGRIF/dev_r11615_ENHANCE-04_namelists_as_internalfiles_agrif which is needed to make this work. Previous commit to this branch has set the svn:externals reference accordingly

14:46 Changeset [11669] by acc

Modify svn externals definition only.

14:01 Changeset [11668] by acc

Branch dev_r11615_ENHANCE-04_namelists_as_internalfiles_agrif. Changes to support 2019/dev_r11615_ENHANCE-04_namelists_as_internalfiles developments.
These changes enable sufficient support for allocatable, zero-dimension character variables defined using the:

CHARACTER(LEN=:), ALLOCATABLE :: cstr

syntax. This is supported by:

  1. Adding : as a valid length identifier at line 1028 in fortran.y (and then rebuilding fortran.c and main.c via make -f Makefile.lex)
  2. Adding a carrayu entry to Agrif_Variable_c type in AGRIF_FILES/modtypes.F90 where carrayu is declared as:
character(:) , allocatable
carrayu
Ensuring correct deallocation of carrayu in AGRIF_FILES/modsauv.F90 and AGRIF_FILES/modutil.F90
  • Substituting carrayu in place of carray0 declarations when character length matches : for zero-dimension variables. This occurs twice in LIB/toamr.c, e.g:
  • if (!strcasecmp(var→v_dimchar ,":") && var→v_nbdim == 0 )
    {
    sprintf (tname_2, "%% carrayu");
    } else {
    sprintf (tname_2, "%% carray%d", var→v_nbdim);
    }

    Any such character variables must be allocated by the user. Typically this is done with lines such as:

    IF ( .NOT. ALLOCATED(cdnambuff) ) ALLOCATE( CHARACTER(LEN=kleng)
    cdnambuff )

    making AGRIF accept the CHARACTER(LEN=kleng) :: construct within the ALLOCATE statement was beyond my skills. Fortunately, for the current purpose, this
    isn't necessary since such allocations only occur within utility routines in which the appropriate tabvar has been passed down. So:

    !$AGRIF_DO_NOT_TREAT

    IF ( .NOT. ALLOCATED(cdnambuff) ) ALLOCATE( CHARACTER(LEN=kleng)
    cdnambuff )
    !$AGRIF_END_DO_NOT_TREAT

    avoids the issue.

    12:40 Changeset [11667] by acc

    New AGRIF development branch for AGRIF changes associated with 2019/dev_r11613_ENHANCE-04_namelists_as_internalfiles developments. Primarily this introduces some support for allocatable, zero-dimension character arrays using the CHARACTER(LEN=:) , ALLOCATABLE :: cstr syntax. Changes are minimal but LEX additions necessitate rebuilding fortran.c and main.c which end up looking very different

    12:17 Changeset [11666] by laurent

    LB: improved syntax

    11:48 Changeset [11665] by laurent

    LB: syntax improvement.

    2019-10-08:

    19:32 Changeset [11664] by smueller

    Inclusion of selected long-periodic tidal constituents in the computation of the tidal potential (ticket #2194)

    18:36 Changeset [11663] by smueller

    Addition of a namelist parameter to enable the selectability of alternative tidal parameter sets and tide-potential computations

    17:24 Changeset [11662] by nicolasmartin

    Idem as before

    17:24 Changeset [11661] by nicolasmartin

    Move custom bash Emacs fontification in a more appropriate place

    12:09 Changeset [11660] by laurent

    LB: xios output of evaporation in sbcblk.F90

    2019-10-07:

    20:23 Changeset [11659] by mathiot

    ENHANCE-03_domcfg: update README.rst (ticket #2143)

    19:55 Changeset [11658] by mathiot

    ENHANCE-03_domcfg: forced local domain to read the overlap region + re-arange the ocean output print (ticket #2143)

    11:50 Changeset [11657] by dancopsey

    Couple the correct sea ice meltpond variables

    2019-10-04:

    21:03 Changeset [11656] by mathiot

    ENHANCE-03_closea: add heat/fw fluxes output from closed seas + rm useless USE statements + add USE ONLY when reasonable + ensure heat conservation during the redistribution process (ticket #2143)

    17:24 Changeset [11655] by smueller

    Addition of explicit job-name specification in the batch-script template for the NOC HPC system

    15:15 Changeset [11654] by mathiot

    ENHANCE-03_domcfg: forced the tools to write data over the EW overlap region. Issue in some eORCA1 decomposition without (ticket #2143)

    14:34 Changeset [11653] by davestorkey

    Fix for bug in Smagorinsky scheme #2318.

    13:40 Changeset [11652] by andmirek

    Ticket #2314. Fix previous commit. Gives the same solution as Eric local copy for ORCA1.

    12:07 Ticket #2318 (bug in Smagorinsky formulation at 4.0) closed by davestorkey
    fixed: In 11651: […]
    12:07 Changeset [11651] by davestorkey

    UKMO/NEMO_4.0_GO8_package : Apply Smagorinsky bug fix (#2318) in GO8 package branch as temporary measure before we pick it up from trunk.

    10:59 Changeset [11650] by clem

    change arch file for jean-zay machine. Necessary to get restartability/reproducibility

    10:57 Changeset [11649] by clem

    change default parameters for landfast ice (Jef Lemieux pers. communication)

    2019-10-03:

    18:22 NEMO_IO_DIAGN.pdf attached to user/andmirek by andmirek
    I/O improvment presentation 03/10/2019
    17:57 Changeset [11648] by acc

    Branch 2019/dev_r11613_ENHANCE-04_namelists_as_internalfiles. Introduce broadcast of namelist character buffer from single reader to all others. This completes the second stage but there is still an issue with AGRIF that may scupper this whole concept

    16:44 Ticket #2318 (bug in Smagorinsky formulation at 4.0) created by davestorkey
    BE CAREFUL !!! Due to dynamic behaviour of this ticket creation page, it …
    15:56 Changeset [11647] by laurent

    LB

    14:13 Changeset [11646] by andmirek

    Ticket #2314 changes for GO8 for tests

    12:00 Changeset [11645] by clem

    make sette work for jean-zay machine

    10:06 Changeset [11644] by cetlod

    Create branch to include CMIP6 diagnostics, see ticket #2315

    09:01 Tag change on System Team/Agenda/2019-10-03 by smasson
    Tags VC added

    2019-10-02:

    16:29 Changeset [11643] by marc

    Adding in Dr Hook to our OMIP branch.

    16:28 Changeset [11642] by acc

    Branch 2019/dev_r11613_ENHANCE-04_namelists_as_internalfiles. Bugfixes on previous commit; fix substring starting point so that it advances correctly when reading namelist block with the loop.

    15:12 Changeset [11641] by acc

    Branch 2019/dev_r11613_ENHANCE-04_namelists_as_internalfiles. Further substantive changes to the BDY routines that read multiple copies of some namelists from namelist_cfg. Special treatment is required to replicate the original behaviour with internal files. These changes emulate previous behaviour but removal of the reliance on multiple, same-named namelist blocks would be preferable.

    14:06 Changeset [11640] by clem

    just correct a print

    13:13 Changeset [11639] by rrenshaw

    regional mean and transport diagnostics added for reanalysis

    12:53 Changeset [11638] by laurent

    LB: preliminary inclusion of "STATION_ASF" test-case!

    12:48 Changeset [11637] by laurent

    LB: preliminary inclusion of "STATION_ASF" test-case!

    12:41 Changeset [11636] by mathiot

    revert yesterday changes and update mpp_loc_generic.h90 with the trunk version instead (ticket #2143)

    12:25 Changeset [11635] by rrenshaw

    updated branch for amm7 reanalysis

    10:50 Changeset [11634] by rrenshaw

    Add Rob's change ticket 246 to use surface data at coorect depth

    2019-10-01:

    21:06 Changeset [11633] by mathiot

    modification for in case a domain is a land domain (MINLOC return 0 as indices for the min) (ticket #2143)

    20:57 Changeset [11632] by clem

    limit snow thickness after advection (with Prather) if snow load makes the ice-snow interface to deplet below sea surface (as for UM scheme)

    20:22 Changeset [11631] by laurent

    LB: syntax improved…

    19:37 Changeset [11630] by nicolasmartin

    Review of TRA chapter

    18:17 Changeset [11629] by mathiot

    ENHANCE-03_closea: cosmetic changes (ticket #2143)

    18:12 Changeset [11628] by mathiot

    ENHANCE-03_domcfg: add cpp_ENHANCE-03_domcfg.fcm and remove make_closea_masks.py (as now managed in the F90 code and remove compilation file (ticket #2143)

    15:40 2019WP/ENHANCE-04_AndrewC-reporting/Internal_Namelists edited by acc
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    15:37 2019WP/ENHANCE-04_AndrewC-reporting/Internal_Namelists edited by acc
    (diff)
    15:34 Changeset [11627] by clem

    change some wrong comments

    15:25 Changeset [11626] by laurent

    LB: syntax improved…

    15:18 Changeset [11625] by jchanut

    #2222, add initialization to 0 of tracer open boundary data with vertical interpolation + various neutral optimizations

    15:07 Changeset [11624] by acc

    Branch 2019/dev_r11613_ENHANCE-04_namelists_as_internalfiles. Substantive changes required to replace all namelists with internal files. These are the key changes only; to compile and run tests all REWIND and CLOSE operations on the (no longer) units have to be removed. These changes affect many more files but can be scripted so are not included here in order to make a later merge easier. The scripts used to prepare code for testing are included on: wiki:2019WP/ENHANCE-04_AndrewC-reporting/Internal_Namelists. With these additional changes this code passes most SETTE tests but the AGRIF preprocessor does not currently accept the new allocatable character strings. To be investigated.

    14:59 Changeset [11623] by laurent

    LB: syntax improved…

    13:10 Changeset [11622] by nicolasmartin

    Review of "Time Domain" and DOM chapters

    2019-09-30:

    18:26 Changeset [11621] by clem

    modify path for jeanzay arch files

    16:37 Changeset [11620] by davestorkey

    UKMO/NEMO_4.0_momentum_trends : remove option to thickness-weight time mean of utrd_tau fields.
    (Tiny error and utrd_tau fields not required for budgets).

    15:57 Changeset [11619] by laurent

    LB: new cool-skin and warm-layer parameterizations for ECMWF and COARE3.6, COARE3.0 uses same CSWL param as for COARE3.6.

    15:49 Changeset [11618] by laurent

    LB: new cool-skin and warm-layer parameterizations for ECMWF and COARE3.6, COARE3.0 uses same CSWL param as for COARE3.6.

    15:33 Changeset [11617] by laurent

    LB: new cool-skin and warm-layer parameterizations for ECMWF and COARE3.6, COARE3.0 uses same CSWL param as for COARE3.6.

    15:23 Changeset [11616] by laurent

    LB: new cool-skin and warm-layer parameterizations for ECMWF and COARE3.6, COARE3.0 uses same CSWL param as for COARE3.6.

    15:18 Changeset [11615] by laurent

    LB: new cool-skin and warm-layer parameterizations for ECMWF and COARE3.6, COARE3.0 uses same CSWL param as for COARE3.6.

    14:34 Changeset [11614] by acc

    New development branch: 2019/dev_r11613_ENHANCE-04_namelists_as_internalfiles to try out improvements to namelist handling. See wiki:2019WP/ENHANCE-04_AndrewC-reporting/Internal_Namelists for the initial ideas. This work forms part of #2167

    11:07 Changeset [11613] by davestorkey

    UKMO/NEMO_4.0_momentum_trends branch : first set of code changes.

    Note: See TracTimeline for information about the timeline view.