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2020-05-06:

17:26 Changeset [12882] by mathiot: ticket #2459: set longer simulation (10 days) for ISOMIP+ in SETTE
16:13 Changeset [12881] by petesykes: Remove unneccessary write statement from previous commit
16:07 Changeset [12880] by petesykes: resolved issue of no MLD data for forecast runs
15:00 Users/Homepage/News edited by clevy: (diff)
14:58 Users/Agenda/2020-05-07 created by clevy
14:38 Changeset [12879] by hadcv: Changes following feedback
13:05 Changeset [12878] by mathiot: ticket 2459: upgrade ISOMIP to ISOMIP+
13:01 Changeset [12877] by mathiot: ticket #2459: I was too optimistic, it require some changes in NEMO too. I need to update test cases MY_SRC to the head of the trunk and maybe namelist_cfg
11:24 Changeset [12876] by mathiot: ticket #2459: branch to replace SPITZ12 by WED025 and ISOMIP by SISOMIP+ in SETTE
11:22 Ticket #2459 (Replace SPITZ12 by WED025 and ISOMIP by ISOMIP+ in SETTE) created by mathiot: […] ==== ST meeting action - WED025 is a regional configuration of …

2020-05-05:

19:02 Changeset [12875] by mathiot: ticket #2417: add extra comments
18:38 Changeset [12874] by mathiot: ticket #2417: add exemple of what could be the new sette core script (sette_test-cases_indev.sh) and an exemple of the input file (input_GYRE.cfg)
18:12 Ticket #2413 (DOMAINcfg write domcfg.nc even if nstop /= 0) closed by mathiot: fixed
18:11 Changeset [12873] by mathiot: ticket #2413: remove ticket branch
18:05 Changeset [12872] by mathiot: ticket #2417: branch to save the pseudo made to generate the pdf used to present the change needed to fulfill the task
17:57 Changeset [12871] by mathiot: ticket #2457: add fix suggested in ticket.
17:48 Changeset [12870] by mathiot: ticket #2413: merge tools_ticket2413 into tools
16:26 Ticket #2458 (XIOS2.5 in coupled model) created by andmirek: ==== Context Building coupled configuration UM + NEMO4 with XIOS2.5 (rev …
15:46 Changeset [12869] by mathiot: ticket #2457: branch to fix minor issue in tools (negative e3t in some specific cases with isf)
12:04 Changeset [12868] by ayoung: SEAMOUNT configuration files (EXPREF and MY_SRC)
11:11 2020WP/TOP-01_rlod_Antarctic_ice_Sheet_Fe_Source edited by rlod: (diff)
11:07 Changeset [12867] by davestorkey: UKMO/NEMO_4.0.1_GM_rossby_radius_cutoff : bug fix.
10:45 Working Groups/SI3 edited by clevy: (diff)
08:57 Developers/Validation/trunk_light edited by smasson: (diff)
08:18 Changeset [12866] by smasson: Extra_Halo: using input files without halos, see #2366

2020-05-04:

20:06 Ticket #2457 (Bug domcfg with isf) created by mathiot: […] ==== Context Under some condition domisf leads to negative …
19:15 Changeset [12865] by mathiot: ticket #2413: add check on nstop in dom_ctl.
18:33 Changeset [12864] by mathiot: ticket #2413: branch to fix minor issue in tools (stop domcfg before writing file if issue detected)
18:32 Changeset [12863] by mathiot: ticket #2413: fix minor issue in tools (stop domcfg before writing file if issue detected)
18:01 Changeset [12862] by mattmartin: Changes to precision of assimilation background writing.
17:57 2020WP/TOP-01_rlod_Antarctic_ice_Sheet_Fe_Source edited by rlod: (diff)
17:07 Changeset [12861] by davestorkey: UKMO/NEMO_4.0.1_GM_rossby_radius_cutoff : science changes.
13:47 Working Groups/SI3 edited by vancop: (diff)
13:45 Blockley_et_al_BAMS2020.pdf attached to Working Groups/SI3 by vancop
10:58 Changeset [12860] by davestorkey: UKMO branch to implement Julie Deshayes' Rossby radius cut-off for the GM coefficient (in the Treguier et al formulation).

2020-05-03:

18:01 Developers/Validation/trunk_light edited by smasson: (diff)
13:03 Developers/Validation/r4.0_light edited by smasson: (diff)
13:02 Ticket #2456 (model does not stop properly in stpctl) closed by smasson: fixed: fixed in [12859] pass all sette tests and gives the same results as …
11:33 Changeset [12859] by smasson: r4-HEAD: stpctl bugfix, see #2456
11:32 Ticket #2456 (model does not stop properly in stpctl) created by smasson: ==== Context Same as #2418 but for the r4.0-HEAD ==== Analysis see …
11:04 Changeset [12858] by smasson: r12581_ticket2418: bugfix not seen on X64_IRENE, see #2418

2020-05-02:

19:03 Developers/Validation/r4.0_light edited by smasson: (diff)
18:52 Developers/Validation/r4.0_light edited by smasson: (diff)
18:06 Changeset [12857] by jchanut: Correct swapped conditionnal statement in corners (hence undetected without corners) introduced in previous commit, #2440
18:01 Ticket #2440 (Issue with land processors removal) reopened by jchanut
16:29 Developers/Validation/r4.0_light edited by smasson: (diff)
16:27 Developers/Validation edited by smasson: (diff)
16:23 Developers/Validation/r4.0_light created by smasson
11:55 Changeset [12856] by smasson: r12581_ticket2418: stupid bugfix following [12855], see #2418
10:11 Working Groups/SI3 edited by vancop: (diff)

2020-05-01:

19:09 Changeset [12855] by smasson: r12581_ticket2418: add check for Infinity, see #2418
19:06 Changeset [12854] by clem: 1st implementation of snow fraction (impact on albedo). Light transmission is still not ok since we need a non-zero penetration of solar flux when snow thickness is > 0
18:56 Changeset [12853] by smasson: r12581_ticket2418: merge with trunk@12852, see #2418
18:24 Changeset [12852] by cetlod: trunk : minor bug correction
18:22 Changeset [12851] by cetlod: r4.0-HEADr12713_clem_dan_fixcpl : minor bug correction
18:21 Changeset [12850] by cetlod: r4.0-HEAD : minor bug correction
17:33 Changeset [12849] by dancopsey: Do not output iceberg and icesheet info when nn_print is zero.
15:44 Changeset [12848] by cguiavarch: Extra sea ice diagnostics
15:05 Changeset [12847] by cguiavarch: Limit hmle (hmle < 1.2 mld)
14:07 Changeset [12846] by smasson: r12581_ticket2418: merge with trunk@12845, see #2418
13:11 Ticket #2391 (wrong default definition in namelist_pisces_ref) closed by cetlod: fixed
13:11 Changeset [12845] by cetlod: Change TOP & PISCES namelist parameter as we need the new input files, see ticket #2391
13:00 Ticket #1516 (New CNRS branch for PISCES quota model) closed by cetlod: fixed
13:00 Ticket #2453 (River supply of nutrients) closed by cetlod: fixed: Done in r4.0-HEAD & trunk
12:59 Ticket #2454 (GGE of zooplankton) closed by cetlod: fixed: done in r4.0-HEAD & trunk
12:57 Changeset [12844] by smasson: r12581_ticket2418: merge with trunk@12843, see #2418
12:57 Ticket #2455 (Various small bugs in the sediment module of PISCES) closed by cetlod: fixed: Done in r4.0-HEAD & trunk
12:55 Ticket #2389 (adventures with OFFLINE, BDY and MY_TRC) closed by cetlod: fixed: Fixes done in r4.0-HEAD & trunk
12:54 Changeset [12843] by cetlod: trunk : bugfix on BDY & OFF, see ticket #2389
12:53 Changeset [12842] by cetlod: r4.0-HEAD_r12713_clem_dan_fixcpl : bugfix on BDY & TOP, see ticket #2389
12:52 Changeset [12841] by cetlod: r4.0-HEAD : bugfix on BDY & TOP, see ticket #2389
10:58 Changeset [12840] by smasson: r12581_ticket2418: improve stpctl error messages and release the max of 9999 MPI tasks in files names, see #2418
10:39 Changeset [12839] by cetlod: trunk : Bugfixes PISCES model, see ticket #2454, #2455
10:38 Changeset [12838] by cetlod: r4.0-HEAD_r12713_clem_dan_fixcpl : Bugfixes PISCES model, see ticket #2453, #2454, #2455
10:37 Changeset [12837] by cetlod: r4.0-HEAD : Bugfixes PISCES model, see ticket #2453, #2454, #2455

2020-04-30:

16:27 Ticket #2455 (Various small bugs in the sediment module of PISCES) created by aumont: Various bugs have been identified in the sediment module of PISCES. These …
16:24 Ticket #2454 (GGE of zooplankton) created by aumont: […] ==== Context Grazing efficiency of zooplankton depends on the …
16:19 Ticket #2453 (River supply of nutrients) created by aumont: […] ==== Context Nutrients are supplied to the ocean by river …
14:00 Changeset [12836] by jcastill: Bug fix: when coupling with waves, the model crashed with an xios error saying that the mixed layer depth could not be written. This error is usually thrown when xios is trying to write Na Ns?, but his was not the case. In this case the error looked to happen because xios did not finish writing a variable, but the variable was updated before xios finished. The do loop where this happened has been changed, and some cleaning of the branch done.
08:55 Changeset [12835] by smasson: r12581_ticket2418: suppress l_allon and l_config namelist parameters, see #2418

2020-04-29:

17:27 Changeset [12834] by dancopsey: Revert zhs_min back to original value of 0.01
17:24 Changeset [12833] by clem: adjust namelist_ice_cfg to a change in namelists
17:15 Changeset [12832] by clem: forgotten files from previous commit
17:10 Changeset [12831] by clem: thin snow only partially shades melt ponds and ice as for light penetration
16:02 Changeset [12830] by cguiavarch: Add lateral melting output
15:47 Changeset [12829] by cguiavarch: Change to add basal melt only if the SST is above the freezing point
15:26 Changeset [12828] by cguiavarch: Branch to stop the icebergs melting if the temperature is below the freezing point.
10:20 Changeset [12827] by clem: add a necessary output for cmip simulations
10:09 Changeset [12826] by mattmartin: Create branch for efficiency improvements

2020-04-28:

17:46 Changeset [12825] by cguiavarch: Limit hmle (hmle < 1.2 mld)
15:54 Changeset [12824] by cguiavarch: Updating xml files: removing 4strait grid as option local not available with XIOS2.0, updating ORCA2_ICE_PISCES to pass sette test
15:17 Changeset [12823] by smasson: Clem's branch: missing part in from [12816]
11:10 Changeset [12822] by gm: symmetric sterss tensor and half cell modifications (wet point only, ghost cells)

2020-04-27:

17:06 Developers/Validation/trunk_light edited by smasson: (diff)
17:00 Changeset [12821] by jcastill: Changes for xios 2.5, protected by key_xios25
15:57 Changeset [12820] by dcarneir: Adding fbd observations in obs_oper, distinguishing it from sit
11:14 Changeset [12819] by gsamson: add missing line in previous commit r12818 (ticket #2452)
11:08 Changeset [12818] by gsamson: modifications to activate ABL with ORCA2_ICE_PISCES cfg in SETTE tests; inputs files (ORCA2_ABL_v4.0.tar) not yet available on Zenodo; allow node number > 1 with mercator batch templates (ticket #2452)
10:52 Changeset [12817] by gsamson: create sette_ticket2452 branch from SETTE trunk r12798 for ABL test in ORCA2_ICE_PISCES cfg (ticket #2452)
09:56 Ticket #2452 (integrate ABL in SETTE ORCA2_ICE_PISCES cfg) created by gsamson: […] ==== Context ABL component not yet tested in SETTE ==== Analysis …

2020-04-25:

14:32 Changeset [12816] by smasson: Clem's branch: update with trunk, update with UKMO/NEMO_4.0.1_remove_0.1m_snow_test and add default restart for pond and lid
11:00 Changeset [12815] by smasson: Extra_Halo: minor bugfix following [12807], see #2366

2020-04-24:

19:52 Ticket #2451 (ABL not restartable) closed by gsamson: fixed
19:51 Changeset [12814] by gsamson: ABL restartability bugfixes (ticket #2451); no SETTE change compared to r12794
19:11 Changeset [12813] by dancopsey: Fix compile errors.
17:31 Changeset [12812] by dancopsey: Merge in Clem's branch:

http://forge.ipsl.jussieu.fr/nemo/browser/NEMO/branches/2020/r4.0-HEAD_r12713_clem_dan_fixcpl
17:20 Changeset [12811] by clem: debug a restartability issue. All sette tests passed now
17:13 Ticket #2451 (ABL not restartable) created by gsamson: […] ==== Context ABL version implemented during 2019 MP is not …
17:09 Changeset [12810] by francesca: POINTER removal and replacing of traadv_mus.F90 file with original version - ticket #2366
09:25 Changeset [12809] by dancopsey: Made a branch to test Clem's branch branches/2020/r4.0-HEAD_r12713_clem_dan_fixcpl

2020-04-23:

18:53 Changeset [12808] by gsamson: change ABL time swap to work with nn_fsbc > 1 (ticket #2419)
17:39 2020WP/HPC-02_Daley_Tiling edited by hadcv: (diff)
17:27 Tiling_call_notes_220420.pdf attached to 2020WP/HPC-02_Daley_Tiling by hadcv
15:14 Changeset [12807] by smasson: Extra_Halo: input file only over inner domain + new variables names, see #2366
12:19 Tag change on System Team/Agenda/2020-04-30 by ayoung: Tags VC added
11:26 Changeset [12806] by dancopsey: Merge in NEMO_4.0.1_old_tidal_mixing
11:20 Changeset [12805] by dancopsey: Merged in NEMO_4.0.1_GO8_package
11:06 Changeset [12804] by dancopsey: Merged in NEMO_4.0.1_GO6_mixing branch
10:57 Changeset [12803] by dancopsey: Merge in NEMO_4.0.1_GC_couple_pkg
10:47 Changeset [12802] by dancopsey: Merge in NEMO_4.0.1_remove_0.1m_snow_test
10:42 Changeset [12801] by dancopsey: Clear SVN keywords
10:21 Changeset [12800] by dancopsey: This branch is to tests Clem's branch r4.0-HEAD_r12713_dan_test_clems_branch in the Met Office where we require the svn keywords removed and a few extra branches merged in to make the coupling work.
10:18 2020WP/VALID-12_clevy_Trusting_Continuous Integration edited by clevy: (diff)
10:11 Changeset [12799] by gsamson: move rhoa computation from sbcabl to sbcblk (to avoid restartability issue over sea-ice); correct prt_ctl calls in ablmod and comment a ctl_stop in iom to allow using 3D atm forcing with bulk mode

2020-04-22:

18:59 Changeset [12798] by gsamson: add corresponding Mercator SETTE batch templates (arch files added at r12797) and update prepare_job.sh script accordingly
17:54 Changeset [12797] by gsamson: additional Mercator Intel arch files for SETTE (ticket #2419)
15:38 Changeset [12796] by andmirek: GMED developmemnt; Ticket 538 add call to xios function
15:30 Changeset [12795] by andmirek: GMED developmemnt; Ticket 538
15:17 Changeset [12794] by smasson: trunk: minor update of usrdef_istate in BENCH
12:50 Developers/Validation/trunk_light edited by smasson: (diff)
12:49 Developers/Validation/trunk_light edited by smasson: (diff)
12:42 Ticket #2450 (ln_vorlat bug: fmask calculation) closed by smasson: fixed: fixed in [12793]
12:42 Ticket #2446 (ln_vorlat bug: fmask calculation) closed by smasson: fixed: fixed in [12792]
12:41 Changeset [12793] by smasson: trunk: fixe minor bug in dynvor, see #2450
12:41 Ticket #2450 (ln_vorlat bug: fmask calculation) created by smasson: same as #2446 but for the trunk
12:39 Changeset [12792] by smasson: r4.0-HEAD: fixe minor bug in dynvor, see #2446
12:23 Ticket #2449 (wrong coastal boundary condition in dyn_ldf_blp) closed by smasson: fixed: fixed in [12791] [12791] changes the results of configuration using …
12:22 Ticket #2448 (wrong coastal boundary condition in dyn_ldf_blp) closed by smasson: fixed: fixed in [12790] [12790] passes all sette tests with X64_IRENE and …

2020-04-21:

22:41 Changeset [12791] by smasson: r4.0-HEAD: fix coastal boundary conditions in dyn_ldf_blp, see #2449
22:33 Changeset [12790] by smasson: trunk: fix coastal boundary conditions in dyn_ldf_blp, see #2448
22:29 Ticket #2449 (wrong coastal boundary condition in dyn_ldf_blp) created by smasson: ==== Context Same as #2448 but for the 4.0-HEAD This bug affects the …
22:26 Ticket #2448 (wrong coastal boundary condition in dyn_ldf_blp) created by smasson: ==== Context This bug affects the coastal boundary conditions of …
16:59 2020WP/HPC-02_Daley_Tiling edited by hadcv: (diff)
15:36 2020WP/HPC-02_Daley_Tiling edited by hadcv: (diff)
15:32 tra_ldf_iso trial.pdf attached to 2020WP/HPC-02_Daley_Tiling by hadcv: Trial implementation in tra_ldf_iso
14:09 2020WP/DATAINT-02_smueller_IOM_revision edited by smueller: (diff)
14:01 Changeset [12789] by rrenshaw: adopt one of Rob's profile fixes
13:21 Changeset [12788] by davestorkey: UKMO/NEMO_4.0.1_biharmonic_GM : New calculation for zmu with new rn_bgm_msc namelist parameter.
12:54 2020WP/DATAINT-02_smueller_IOM_revision edited by smueller: (diff)
12:51 Changeset [12787] by rrenshaw: fix
11:38 Changeset [12786] by rrenshaw: fix for profiles

2020-04-20:

20:48 Changeset [12785] by clem: debug ice evap for the coupling in sbccpl and implement the possibility to read the cloud cover for a more accurate calculation of ice albedo. This functionality is only implemented in the bulk, I leave the task for the coupling to the people who know better (though I put the first bricks already)
20:26 Changeset [12784] by rrenshaw: fix for profiles
20:24 Ticket #2447 (Wave variables not allocated) created by jcastill: […] ==== Context The code allows using some of the wave coupling …
20:19 Changeset [12783] by rrenshaw: bug fixes for profiles from https://code.metoffice.gov.uk/trac/utils/ticket/335
19:52 Changeset [12782] by rrenshaw: branch for AMM7 reanalysis
19:48 Changeset [12781] by rrenshaw: branch for AMM7 NWS reanalysis
19:41 Changeset [12780] by dancopsey: Increase length of NEMO river input file.
19:20 Ticket #2446 (ln_vorlat bug: fmask calculation) created by jcastill: […] ==== Context It appears to be a bug in the initialization of …
19:01 Ticket #2445 (Minimum roughness when equal to significant wave height) created by jcastill: […] ==== Context When running in wave coupled mode and using …
18:53 Changeset [12779] by techene: modify TOP to be able to run with key_qco i.e. remove e3. gdep. and use a substitute instead (# include "domzgr_substitute.h90")
16:35 Changeset [12778] by jcastill: Implement user-defined sbc: tides only
13:31 Changeset [12777] by davestorkey: UKMO/NEMO_4.0.1_biharmonic_GM : Remove duplicate dyn_ldf_lap_no_ahm routine. This version bit compares with previous version.
11:24 Changeset [12776] by davestorkey: UKMO/NEMO_4.0.1_biharmonic_GM : Allow option of running with standard viscosity and biharmonic GM. This version bit compares with previous version.
09:15 Changeset [12775] by davestorkey: UKMO/NEMO_4.0.1_biharmonic_GM : bug fixes.

2020-04-19:

14:31 Changeset [12774] by clem: forgotten commit for canal test case
11:17 2020WP/TOP-01_rlod_Antarctic_ice_Sheet_Fe_Source edited by rlod: (diff)

2020-04-18:

09:51 Changeset [12773] by davestorkey: UKMO/NEMO_4.0.2_GO8_package : Bug fix for dommsk.F90.

2020-04-17:

18:32 Changeset [12772] by mathiot: #2444: changes requested by Dave
18:20 Changeset [12771] by mathiot: #2444: missing files
17:12 Changeset [12770] by gsamson: fix ABL restartability issue (ticket #2419)
17:06 Changeset [12769] by mathiot: #2444: update of the documentation (prior to changes suggested by Dave)
16:36 Changeset [12768] by mathiot: #2444: create branches to update the documentation
16:34 Ticket #2444 (Update NEMO doc for last year dev on closea and ISF) created by mathiot: ==== Context Update documentation of the trunk (last year development on …
16:07 Changeset [12767] by mathiot: NEMO_4.0.2_GO8_package_ENHANCE-02_ISF_nemo: change to be able to run WED025
14:54 Changeset [12766] by hadcv: tra_ldf_iso trial using structures
14:46 Ticket #2443 (TOP-01_rlod_Antarctic_ice_Sheet_Fe_Source) created by rlod: […] ==== Workplan action Wikipage: …
14:45 Changeset [12765] by hadcv: tra_ldf_iso trial using public variables
12:20 Changeset [12764] by hadcv: Create branch to trial public variable approach to tiling
12:20 Changeset [12763] by hadcv: Create branch to trial structure approach to tiling
11:02 Changeset [12762] by davestorkey: UKMO/NEMO_4.0.1_GO8_package : Bug fix for dommsk.F90 (to allow use of Intel compiler).
10:28 Changeset [12761] by techene: add the computation of r3._f before trc_src in stepMLF.F90 for that there is to change ssh_atf to be able to compute a filtrered ssh without changing the ssh field
08:53 Changeset [12760] by smasson: Extra_Halo: update do_loop_substitute for nn_hls=2, see #2366
00:17 Changeset [12759] by aumont: make parameterizations in PISCES-operationnal more similar to thos of PISCES-QUOTA (prey switching, optimal allocation, size, …)

2020-04-16:

18:05 Changeset [12758] by dford: Branch to allow nitrogen balancing based on 3D chlorophyll increments.
15:35 Changeset [12757] by clem: fix xml again
15:34 Changeset [12756] by clem: fix xml again
12:35 Changeset [12755] by jcastill: Fix to avoid dividing by a very small number when nn_z0_met=3
11:33 Ticket #2441 (Wave coupling only: not receiving coupling fields) closed by jcastill: invalid
10:24 Changeset [12754] by clem: fix symlink
10:22 Changeset [12753] by clem: Remove symlink
10:21 Ticket #2440 (Issue with land processors removal) closed by jchanut: fixed: Successfully tested mpp reproducibility in an ARCTIC zoom with lots of …
10:04 Changeset [12752] by clem: deal with xml links
09:44 Changeset [12751] by clem: update CANAL for students experiments

2020-04-15:

18:38 Changeset [12750] by jcastill: Comment some excessive warnings
15:49 Changeset [12749] by gsamson: ABL code cleaning and small bugfixes; modify shared and ORCA2_ICE_ABL cfgs files accordingly (ticket #2419)
14:59 Changeset [12748] by techene: bug fix
13:57 Changeset [12747] by mathiot: NEMO_4.0.2_GO8_package_ENHANCE-02_ISF_nemo: fix compilation issue
12:13 Changeset [12746] by rlod: Creation of New branch for Fe Source from Antarctic Ice Sheet for TOP

2020-04-14:

08:14 Changeset [12745] by smasson: Extra_Halo: iom cleaning and fix ICB restartability, see #2366

2020-04-12:

16:11 Changeset [12744] by clem: make sure all pond lids are set to 0 when not using this option
15:01 Changeset [12743] by clem: remove test on the ponds from namelist_ice_ref
14:46 Changeset [12742] by clem: all sette tests passed
12:15 Changeset [12741] by clem: introduce a convergence test for rheology. Needed for the upcoming implementation of new rheologies and to compare EVP with aEVP
11:05 Ticket #2442 (some tests or cfgs cases (not included in sette) are not compiling) closed by smasson: fixed: fixed in [12740] all tests and cfgs are now compiling. sette for tests are …
11:03 Changeset [12740] by smasson: trunk: update/debug of tests and C1D, see #2442
10:03 Ticket #2442 (some tests or cfgs cases (not included in sette) are not compiling) created by smasson: ==== Context several tests or cfgs cases (not included in sette) are not …

2020-04-11:

15:50 Changeset [12739] by smasson: Extra_Halo: missing 1 file in [12738], see #2366
15:38 Changeset [12738] by smasson: Extra_Halo: iom cleaning/update to work only with unknown, global or local (without halos) domains, see #2366