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2020-08-06:

17:07 Changeset [13389] by dancopsey

Fix compile errors.

17:05 Changeset [13388] by dancopsey

Fix conflicts with penetrating solar branch

16:51 Changeset [13387] by dancopsey

Fix conflicts with penetrating_solar branch.

12:14 Ticket #2459 (Replace SPITZ12 by WED025 and ISOMIP by ISOMIP+ in SETTE) closed by mathiot
fixed
12:13 Changeset [13386] by mathiot

ticket #2459: remove dev branch (dev branch already commited into the trunk@13382)

12:10 Changeset [13385] by mathiot

ticket #1927: forgot to delete the dev branch when I closed the ticket

10:50 Changeset [13384] by mattmartin

First working version of surface velocity observation operator code.

09:56 Changeset [13383] by mathiot

change sette externals revision to point to the new revision

09:48 Changeset [13382] by mathiot

sette: replace SPITZ12 and ISOMIP by ISOMIP+; Fix minor bug in sync_config() (ie sette -s option) in case MY_SRC directory does not exist.

09:29 Changeset [13381] by mathiot

ticket #2459: clean list of config for result comparison (remove duplicate and add missing configs)

2020-08-05:

23:06 New topic on Tools created by Tj21
SIREN compilation
19:29 Changeset [13380] by mathiot

ticket #2459: restore change for personal tests

19:27 Changeset [13379] by mathiot

update ISOMIP+: fix bug if default init not 0

19:25 Changeset [13378] by mathiot

ticket

17:17 Ticket #2510 (out of bound in dtadyn.F90) closed by mathiot
fixed
17:15 Changeset [13377] by mathiot

ticket #2510: fix out of bound in dtadyn.F90

17:13 Ticket #2510 (out of bound in dtadyn.F90) created by mathiot
[…] ==== Context SETTE tests on the trunk failed on UGA cluster. The …
10:43 Changeset [13376] by dancopsey

Fix compile errors and conflicts.

2020-08-04:

20:51 Ticket #2509 (AGRIF_DEMO: strange salinity in parent grid close to the coast if ...) created by andrea.gierisch
==== Context I'm running AGRIF_DEMO with release-4.0.2. The salinity in …

2020-08-03:

18:26 Changeset [13375] by jwhile

Updates for 1d running

15:48 Changeset [13374] by mathiot

ticket #1900: fix issue about mask management in icb_utl_bilin_3d_h; add option to ground icb if icb bottom lvl hit oce bottom lvl

11:46 Changeset [13373] by cetlod

TOP-05_Ethe_Agrif : 1st step of changes to successfully compile, see ticket #2508

11:03 Changeset [13372] by cetlod

Creation of New branch for AGRIF with TOP & PISCES, see ticket #2508

10:56 2020WP/TOP-05_Ethe_Agrif edited by cetlod
(diff)
10:54 Ticket #2508 (TOP-05_Ethe_Agrif) created by cetlod
[…] ==== Workplan action Wikipage: wiki:2020WP/TOP-05_Ethe_Agrif
10:05 Changeset [13371] by jchanut

#2222, remove constrain on jpk_parent ⇐ jpk_child with last library change

2020-07-31:

18:01 Ticket #2507 (PAR output averaged on free-of-ice cell area) created by cperruche
[…] ==== Context In p4zopt.F90, PAR is computed on the part of the …
11:00 Changeset [13370] by jchanut

#2222, changes to allow less vertical levels over child grid than parent

10:50 Changeset [13369] by jpaul

update: cf changelog inside documentation

10:46 Changeset [13368] by mattmartin

Create branch to develop observation operator for surface currents.

10:45 Changeset [13367] by mattmartin

Remove branch.

10:43 Changeset [13366] by mattmartin

Create branch to implement an observation operator for surface currents data.

2020-07-30:

18:57 Changeset [13365] by mathiot

ticket #1900: add compatibility check (nn_fsbc and ln_M2016, SAS and ln_M2016) and rm useless debug print

17:05 Changeset [13364] by techene

hydrostatic pressure gradient is computed with density anomaly when possible

17:03 Changeset [13363] by techene

horizontal surface pressure gradient is now added systematically (linear and non-linear case) to rhs when explicit time scheme, it is not removed in the non linear case when time splitting

17:01 Changeset [13362] by techene

horizontal surface pressure gradient is now added systematically (linear and non-linear case) to rhs when explicit time scheme, it is not removed in the non linear case when time splitting

16:46 Changeset [13361] by techene

make horizontal surface pressure gradient public variables local

16:12 Changeset [13360] by techene

branch for pressure gradient rearrangement associated with #2506

15:40 Changeset [13359] by mathiot

ticket #1900: add subroutine icb_utl_zavg, fix issue in icb_utl_getkb, add subroutine test_icb_utl_getkb to test awkward cases (will be removed after the review), simplify icbdyn.F90 icbthm.F90 according to the new routine created.

15:00 Changeset [13358] by clem

creating release r4.0.3

13:20 Changeset [13357] by mathiot

ticket #1900: add changes for Merino 2016 works. Results unchanged if flag ln_M2016 is set to .false. . Remaining step: test ln_M2016 = .true.

12:17 Changeset [13356] by frrh

Stage 2 developments for NGMS coupling.
Here we aim to implement coupling of dummy fields in a normal GO8 model.

12:12 Changeset [13355] by jwhile

Merged in changes to fix 1d running - documented in UKMO ocean utils ticket 367

12:08 Changeset [13354] by jwhile

Merged in trunk

10:53 2020WP/KERNEL-08_techene_gm_HPG_SPG edited by techene
(diff)
10:39 Ticket #2506 (modify pressure gradient implementation as defined in equation A.19 of ...) created by techene
[…] ==== Workplan action Wikipage: …
10:36 2020WP/KERNEL-08_techene_gm_HPG_SPG created by techene
10:36 Tag change on 2020WP/KERNEL-08_techene_gm_HPG_SPG by techene
Tags WP added

2020-07-29:

19:07 NEMO HPC telco OpenIFS-XIOS benchmarking.pdf attached to Working Groups/HPC/Mins_2020_07_28 by epico
ESiWACE2: OIFS-XIOS benchmarking
13:06 Changeset [13353] by dancopsey

Correctly scale ice fluxes by ice fractions from last coupling point.

10:33 Changeset [13352] by jchanut

#2222, #2129: correct depths used in linear vertical interpolation. NB: these are also used for initial state interpolation/extrapolation with identical vertical grids

09:59 Tag change on System Team/Agenda/2020-07-30 by gsamson
Tags VC added

2020-07-28:

22:25 Ticket #2505 (NESTING tools: Bathymetry at bdy of AGRIF-nest is not consistent with ...) created by andrea.gierisch
==== Context I use release4.0.2/tools/NESTING (revision 12273) to create …
18:07 NEMO_HPC_telco_MixedPrecisionStatus.pdf attached to Working Groups/HPC/Mins_2020_07_28 by epico
Advances on mixed precision and its impact on developers
18:06 NEMO_HPC_WG_Miguel_Castrillo_ORCA36.pdf attached to Working Groups/HPC/Mins_2020_07_28 by epico
Scaling NEMO4 I/O using the new ORCA36 configuration
18:03 Working Groups/HPC/Mins_2020_07_28 edited by epico
(diff)
18:02 Working Groups/HPC/Mins_2020_07_28 created by epico
17:20 Changeset [13351] by jchanut

#2222, fixes mistakes when removing key_vertical - rename flag in namelist to prevent further mistakes - vertical refinement works fine in VORTEX

16:47 Ticket #2492 (Out-of-bounds error in ORCA2-based mono-processor configuration) closed by smueller
fixed: source:/NEMO/releases/r4.0/r4.0-HEAD@13350 has passed the standard SETTE …
14:28 Changeset [13350] by smueller

Remedy for the bugs reported in ticket #2492

13:04 Changeset [13349] by jwhile

Branch of branch for further changes

2020-07-27:

19:00 Ticket #2504 (Minor typo in sbc_blk_init that can lead to incorrect reporting of bulk ...) closed by acc
fixed
18:55 Changeset [13348] by acc

Branch r4.0-HEAD. Fix simple typo in sbc_blk_init. #2504

18:53 Ticket #2504 (Minor typo in sbc_blk_init that can lead to incorrect reporting of bulk ...) created by acc
==== Context A simple cut-and-paste error that means the true value of …
17:51 Changeset [13347] by dancopsey

First lot of code added

17:02 Ticket #2332 (Reduce unnecessary computation in sbccpl.F90) closed by timgraham
invalid: Hi Seb, Thanks for the reply to this. This is why I wanted some feedback …
14:52 Changeset [13346] by clem

change namelist parameter ln_rhg_chkcvg into nn_rhg_chkcvg to ensure more flexibility

14:51 Changeset [13345] by mathiot

ticket #2502: changes to generate exactly the same namelist without any trailing space (if there are some) in the namelist_cfg.

11:59 Changeset [13344] by clem

change spitz12 namelist Cnsequently to previous commit

11:54 Changeset [13343] by clem

change namelist parameters (ice and ocean) for best results

11:51 Ticket #2503 (DOMcfg: careful review/cleaning needed after r13204) created by mathiot
[…] ==== Context Work to have DOMcfg compatible with Agrif has been …
11:32 Changeset [13342] by cetlod

r4.0-HEAD : bugfix on PISCES temporal scheme, see ticket #2501

11:05 Changeset [13341] by mathiot

add dom_doc.f90 tool, xtrac_namelist.bash tool and add possibility to use non-default input file name with make_domain_cfg.exe

10:56 Changeset [13340] by clem

move bn2 into the right grid

10:34 Changeset [13339] by mathiot

branch to implement ticket #2502

10:15 Ticket #2502 (DOMcfg: improve reproducibility of the domcfg.nc) created by mathiot
[…] ==== Context When you found a domaincfg.nc, it is difficult to …

2020-07-24:

16:29 Changeset [13338] by jchanut

#2222, forgotten key_agrif in previous commit

16:01 Changeset [13337] by jchanut

#2222, start suppressing key_vertical (add ln_vremap namelist flag)

12:43 Ticket #2501 (Bug in PISCES when using the leapfrog temporal scheme) created by aumont
[…] ==== Context 2 temporal schemes can be used when enabling ocean …
11:52 Ticket #2500 (Memory usage of DOMAINcfg) created by mathiot
BE CAREFUL !!! Due to dynamic behaviour of this ticket creation page, it …
10:55 Changeset [13336] by dancopsey

Make a NEMO4.0.1 branch.

2020-07-22:

16:24 Changeset [13335] by jchanut

Correct definition for tracers as suggested by Laurent, #2222, #2129

16:20 Changeset [13334] by jchanut

finish bypassing ocean/ice initialization with AGRIF, #2222, #2129

16:05 Changeset [13333] by cetlod

trunk : bugfix in the heat content trend when activating bio-model light penetration, see ticket #2499

16:04 Changeset [13332] by cetlod

r4.0-HEAD_r12713_clem_dan_fixcpl : bugfix in the heat content trend when activating bio-model light penetration, see ticket #2499

16:00 Changeset [13331] by cetlod

r4.0-HEAD : bugfix in the heat content trend when activating bio-model light penetration, see ticket #2499

15:36 Ticket #2499 (Major bug when activating bio-model light penetration) created by cetlod
[…] ==== Context When using the simulated time varying chlorophyll by …

2020-07-21:

14:27 Changeset [13330] by andmirek

Ticket #2482: changes in arch file for cpp on Power/Intel? and additional library for profiling

10:23 Ticket #2498 (SETTE test of the trunk do not pass on jean zay) closed by techene
fixed
10:05 Changeset [13329] by techene

bug correction see #2498

09:57 Changeset [13328] by gm

fixes from last merge qco r12983

2020-07-20:

22:30 Ticket #2498 (SETTE test of the trunk do not pass on jean zay) created by techene
[…] ==== Context Sette tests with NEMO's trunk do not pass on jean …
17:33 Changeset [13327] by acc

Final trunk change to obtain tracer.stat consistency and independence from nn_hls. The trunk is still restartable and reproducible with SETTE (ln_icebergs = F) AND run.stat and tracer.stat files match for both nn_hls = 1 and nn_hls = 2. This final piece was found by Seb last week but was missed from the commit. #2366

13:14 2020WP/KERNEL-06_techene_better_e3_management edited by techene
(diff)
13:03 Changeset [13326] by andmirek

Ticket #2482: Update compiler file

12:15 2020WP/KERNEL-06_techene_better_e3_management edited by techene
(diff)
10:09 wayne_gaudin_topo.jpg attached to User Manager Plugin Pictures by wayne_gaudin
wayne_gaudin's Avatar
09:12 Changeset [13325] by andmirek

Ticket ##2482: Use explicit index in dynspg_ts.F90

2020-07-17:

21:47 Changeset [13324] by acc

Trunk changes to achieve reproducibility of tracer.stat files in SETTE with nn_hls=2. There is still an untraced dependency on nn_hls in the tracer.stat values but REPRO_4_8 and REPRO_8_4 are now in agreement for each set of runs with each value of nn_hls (with ln_icebergs=.false.

20:07 Ticket #2497 (Incorrect time-series output in file tracer.stat when key_iomput is ...) closed by smueller
fixed: source:/NEMO/releases/r4.0/r4.0-HEAD@13323 has passed the standard SETTE …
19:08 Changeset [13323] by smueller

Repair of the tracer.stat time-series computation (ticket #2497)

17:21 Changeset [13322] by jwhile

Updates to how STO deals with 1d case.

Refactor of stopack, as per review

12:37 Changeset [13321] by jwhile

Changed the way I use keys in stopack as per review

09:58 Changeset [13320] by jwhile

Changes for Matt's review

2020-07-16:

19:15 Changeset [13319] by dford

Deleting branch as changes merged back.

19:14 Changeset [13318] by dford

Allow assimilation of PFT chlorophyll profiles. See Met Office utils ticket 346.

19:09 Changeset [13317] by dford

Deleting branch as changes merged back.

19:08 Changeset [13316] by dford

Allow nitrogen balancing when assimilating 3D chlorophyll data. See Met Office utils ticket 346.

19:02 Changeset [13315] by dford

Fix for building physics-only.

18:50 Changeset [13314] by smueller

Enabling of the choice between biogeochemical model components PISCES and MEDUSA in the BENCH test case

The biogeochemical model component used in the BENCH test case can be selected by creating in the experiment directory a symbolic link 'namelist_top_cfg' that links to file './namelist_top_cfg_PISCES' (PISCES) or file './namelist_top_cfg_MEDUSA' (MEDUSA).

18:46 Changeset [13313] by jchanut

Create branch to finalize vertical interpolation with AGRIF (#2222), transition to new time stepping (#2018) + potential corrections to CMEMS dev (#2129)

16:15 Changeset [13312] by jchanut

fixes small compilation issue with key_AGRIF and key_vertical, #2129

15:27 Changeset [13311] by frrh

Save dev changes for concurrent LFRIC + GO8 running

11:13 Changeset [13310] by clem

zdftke: orca1 crashes after 6 months unless implicit drags is used or the input of energy below sea-ice is increased. We chose here to remove the dependency of ice fraction in the surface condition on tke (back to old formulation). The rest of the changes are just there to prevent roundoff errors.

11:12 Changeset [13309] by clem

zdftke: orca1 crashes after 6 months unless implicit drags is used or the input of energy below sea-ice is increased. We chose here to remove the dependency of ice fraction in the surface condition on tke (back to old formulation). The rest of the changes are just there to prevent roundoff errors.

2020-07-15:

20:16 Changeset [13308] by smueller

Revision-number update of the externals definitions for src/TOP/MEDUSA and cfgs/ORCA2_MEDUSA

10:38 Changeset [13307] by andmirek

Ticket #2482: Few additional corrections

10:32 Changeset [13306] by andmirek

Ticket #2482: Replace ifdef with if defined in iom.F90

2020-07-14:

19:12 Changeset [13305] by acc

Trunk changes required to avoid issues with the outer halo in ORCA2_ICE_PISCES,
REPRO_8_4 tests with nn_hls=2. These changes ensure that tmask and output
from sbc_blk are set correctly in the outer halo. Failure to set valid
values in the outer halo can generate Na Ns? which lead to OOB errors in the
XRGB lookup table used for the TRC optics.See #2366 for details. With these
changes all variants of the ORCA2_ICE_PISCES SETTE test will complete. There
are still differences between the 1 and 2 halo width runs but running with:
no land suppression; partial land suppression or full land suppression does
not alter either set of results. Likewise setting ln_nnogather either true
or false does not alter results. Differences in run.stat start after 140
timesteps and differences in tracer.stat start after 60 timesteps between
the different halo width sets. Equivalent tests with ln_icebergs = F show no
differences in run.stat but halo-width dependent differences in tracer.stat
persist (now after 64 timesteps).

18:32 Ticket #2497 (Incorrect time-series output in file tracer.stat when key_iomput is ...) created by smueller
==== Context The file tracer.stat produced by a standard …
15:38 Changeset [13304] by davestorkey

UKMO/NEMO_4.0.2_GO8_package : minor update to dommsk.F90 (see GMED ticket 553).

13:38 Changeset [13303] by mocavero

Add neighborhood collectives lbc routines - ticket #2496

10:47 2020WP/HPC-07_mocavero_mpi3 edited by francesca
(diff)
10:43 Changeset [13302] by mocavero

Create HPC-07 branch - ticket #2496

10:17 Ticket #2496 (2020WP/HPC-07_mocavero_mpi3) created by francesca
[…] The task concerns the use of MPI3 neighbourhood collective …

2020-07-13:

16:12 Changeset [13301] by smueller

Addition of warning output from model runs with sea ice, with active freshwater-budget adjustment, but without sea-level compensation for non-zero initial sea-ice/snow mass (see ticket #2487)

15:06 Changeset [13300] by smueller

Activation of sea-level compensation for non-zero initial sea-ice/snow mass in reference configuration ORCA2_ICE_PISCES (see ticket #2487)

14:34 Changeset [13299] by smueller

Addition of a namelist parameter to enable the selectability of sea-level compensation for non-zero sea-ice/snow mass (see ticket #2487)

12:12 Changeset [13298] by dancopsey

Improve error message when there is a zero river area for one of the rivers.

10:03 Ticket #2460 (write restart with XIOS in AGRIF) closed by andmirek
fixed: committed as 13297.
10:01 Changeset [13297] by andmirek

Ticket #2460 into 4.0-HEAD

2020-07-10:

20:36 Changeset [13296] by acc

Update comments in new do_loop_substitute.h90 on the trunk

20:24 Changeset [13295] by acc

Replace do-loop macros in the trunk with alternative forms with greater flexibility for extra halo applications. This alters a lot of routines but does not change any behaviour or results. do_loop_substitute.h90 is greatly simplified by this change. SETTE results are identical to those with the previous revision

20:15 Changeset [13294] by smueller

Overriding of the initial sea-level compensation for non-zero sea-ice/snow mass in nested domains (see ticket #2487)

19:01 Developers/Validation/trunk_light edited by smasson
(diff)
17:58 Changeset [13293] by smasson

trunk: update svn:externals for sette

17:55 Changeset [13292] by smasson

update sette with sette/r12931_sette_ticket2366

16:42 Developers/Validation/r4.0_light edited by smasson
(diff)
16:41 Developers/Validation/r4.0_light edited by smasson
(diff)
14:58 Changeset [13291] by smasson

trunk: bugfix in bestpartition, see #2366

13:50 Developers/Validation/r4.0_light edited by smasson
(diff)
12:29 Changeset [13290] by smasson

trunk: mpp_nfd_generic: fix sp/dp compilation issue, following Rachid advise, see #2366

12:13 Changeset [13289] by smasson

trunk: dynspg_ts: must call lnc_lnk before ln_bdy staff

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