Timeline
2020-10-05:
- 17:52 Ticket #2540 (add a fwb scheme without any bouyancy flux ?) created by
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[…]
==== Context
NEMO is able to check and correct the fresh water … - 17:24 Changeset [13569] by
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Debug arch file for NOC/X64_MOBILIS. Compatible with sette@13568
- 17:22 Changeset [13568] by
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Added some new controls for SETTE.
SETTE currently carries out several types of tests: restartability, reproducibility, code
corruption (agrif-related) and, in the case of LOCK_EXCHANGE and OVERFLOW, a series of
runs with different physical options. For quick checking, such as is now the default with
a *DEBUG* arch file, a subset of these tests may be appropriate. This commit provides
that possibility by introducing a new command line option to sette.sh. Without arguments
SETTE will carry out all tests labelled as: "RESTART REPRO CORRUPT PHYOPTS". The
explicit equivalent would be:
./sette.sh -x "RESTART REPRO CORRUPT PHYOPTS"
any subset of these is allowed but RESTART is mandatory (since this compiles the code)
and will be prepended if omitted. For example:
./sette.sh
Configurations ORCA2_ICE_PISCES ORCA2_OFF_PISCES AMM12 AGRIF WED025 GYRE_PISCES SAS
ORCA2_ICE_OBS ICE_AGRIF OVERFLOW LOCK_EXCHANGE VORTEX ISOMIP+ will be tested if they
are available
Carrying out the following tests: RESTART REPRO CORRUPT PHYOPTS
Or to test restartability only on one configuration:
./sette.sh -t GYRE_PISCES -x RESTART
Configuration GYRE_PISCES will be tested if it is available
Carrying out the following tests: RESTART
Or trying to test reproducibility on its own will also invoke RESTART:
./sette.sh -t GYRE_PISCES -x REPRO
Configuration GYRE_PISCES will be tested if it is available
Carrying out the following tests: RESTART REPRO
Some subtle changes to the bash scripts have been necessary to achieve
this. Notably, param.cfg is only evaluated by sette.sh and consequently the
sette_reference-configurations.sh and sette_test-cases.sh scripts must now be run within
the same shell as sette.sh. This has been tested but there remains a possibility that
different flavours of bash may behave differently. I will hold off from updating the
svn_external reference for SETTE until this has been confirmed to work elsewhere.
One other change is the addition of an internal setting for USING_EXTRA_HALO which
mimics the USING_ICEBERGS setting within sette_reference-configurations.sh and can be
used to toggle testing with the extra halo.
This commit also introduces a debug arch file for the NOC MOBILIS system. This is an
intel-based system but has a rather dated ifort compiler (17.0.4). The -init=huge
keyword was not introduced until ifort v18. In all other arguments this arch file
matches the set recommened by Seb.
- 17:04 Changeset [13567] by
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Creation of a new branch for modeling the incorporation of Fe into sea ice between PISCES and SI3
- 16:20 Changeset [13566] by
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4.0-HEAD: reduce number of communications for UMx advection scheme (SI3).
- 16:18 Changeset [13565] by
- 15:51 Ticket #2539 (Better management of T/S file used for tradmp.) created by
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[…]
==== Context
Some users feel the need to have more flexibility in …
- 15:33 Changeset [13564] by
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4.0-HEAD: 2nd step to drastically reduce the number of communications in Parther advection scheme (SI3). Sette tests passed. Results are unchanged
- 15:05 Ticket #2538 (Tref and Sref used in simplified eos hard coded) created by
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[…]
==== Context
The simplified eos (ln_seos) is based on :
[…]
…
- 14:56 Changeset [13563] by
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#2365: Fix is_tile bug
- 11:21 Ticket #2537 (Using salinity array as a passive tracer) created by
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==== Context
Test cases often require the use of a passive tracer to ease … - 10:49 Changeset [13562] by
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zgr_pse created only for NS coast
2020-10-04:
- 12:09 2020WP/HPC-07_mocavero_mpi3 edited by
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(diff)
- 11:18 Changeset [13561] by
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Add neighborhood collectives lbc routines for both 5-points and 9-points stencil - ticket #2496
2020-10-02:
- 17:42 Changeset [13560] by
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trun: update sette reference for sette and DEBUG, see #2535
- 17:36 Changeset [13559] by
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sette: update sette for DEBUG mode, see #2535
- 17:30 Changeset [13558] by
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trunk: pass sette tests with debugging option -init=arrays,snan,huge, see #2535
- 17:24 Ticket #2535 (pass sette tests in DEBUG mode...) reopened by
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- 17:21 Ticket #2532 (Several bugs in diaptr) closed by
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fixed: I reported points 1 and 2.
I agree with the 3rd point but with Christian …
- 17:19 Changeset [13557] by
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trunk fix diaprt gugs, see #2532
- 13:01 Changeset [13556] by
- 11:07 Ticket #2536 (MY_SRC of ISOMIP+) created by
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==== Context
The MY_SRC of ISOMIP+ contains many duplicated routines that …
- 10:29 Changeset [13555] by
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add missing timestep duration print in SAS timing.output and add missing timing capacity to OFF/nemogcm.F90; ticket #2528
- 08:48 Changeset [13554] by
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4.0-HEAD: 1st step to drastically reduce the number of communications in Parther advection scheme (SI3). It changes slightly run.stat because some loops are not written in the same order but outputs from a 1year long creg025 simulation are identical
2020-10-01:
- 13:33 Changeset [13553] by
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Merge in trunk up to [13550]
- 12:09 Changeset [13552] by
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#2365: Remove diagnostic output lbc_lnk calls
- 12:04 Changeset [13551] by
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#2365: Replace trd_tra workarounds with ctl_warn if using tiling
- 12:02 Changeset [13550] by
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trunk: remove one communication in rheology, so about 100 overall.
- 12:01 Changeset [13549] by
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4.0-HEAD: remove one communication in rheology, so about 100 overall.
- 09:47 Changeset [13548] by
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Ticket #2482: update architecture file for GPU
2020-09-30:
- 16:14 Developers/Validation/trunk_light edited by
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(diff)
- 11:57 Changeset [13547] by
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remove unused argument in a subroutine
- 10:50 Ticket #2535 (pass sette tests in DEBUG mode...) closed by
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fixed: this version pass all sette tests with X64_JEANZAY_DEBUG with option …
- 10:47 Changeset [13546] by
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trunk: supress the use of undefined values, see #2535
- 09:57 Ticket #2535 (pass sette tests in DEBUG mode...) created by
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==== Context
pass sette tests in debug mode and suppress use of undefined …
- 09:46 Changeset [13545] by
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arch: update debug arch files
- 09:41 Ticket #2519 (User defined straight open boundary segments and halo size does not work) closed by
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fixed
- 09:41 Ticket #2519 (User defined straight open boundary segments and halo size does not work) reopened by
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- 09:41 Ticket #2519 (User defined straight open boundary segments and halo size does not work) closed by
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fixed
- 09:03 Changeset [13544] by
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now VP rheology compiles
2020-09-29:
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Tags VC added
- 16:14 Changeset [13543] by
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Creation of a new branch for Nutrient Source from Antarctic Ice Sheet in TOP
- 15:36 Changeset [13542] by
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Ticket #2386: additional fixes for trunk changes
- 14:07 Changeset [13541] by
- 12:56 Ticket #2472 (bug in the drags (with ln_wave and ln_Cd_L15)) closed by
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fixed
- 12:41 Changeset [13540] by
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Ticket #2386: update to latest trunk
- 12:40 Changeset [13539] by
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#2365: Use assumed-shape declarations in wrapped functions
- 12:23 Ticket #2528 (mixed up ctl files with SAS in coupled mode) closed by
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fixed
- 12:21 Changeset [13538] by
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change control print filenames when using SAS+OASIS and add optional input filename argument in timing_init routine; ticket #2528
- 12:18 Ticket #2384 (ORCA2_OFF_PISCES sette test) closed by
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wontfix: ORCA2_OFF_PISCES not in sette any more.
- 12:09 Changeset [13537] by
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trunk: bugfix for BDY defined with segments, see #2519
- 11:30 Ticket #2523 (phasing 4.0 - trunk) closed by
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fixed
- 11:22 Changeset [13536] by
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VP rheology, first code version finalised
2020-09-28:
- 16:32 Changeset [13535] by
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#2365: Delete unused branch
- 16:32 Changeset [13534] by
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#2365: Delete unused branch
- 16:31 Changeset [13533] by
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#2365: Delete unused branch
- 16:14 Ticket #2534 (Extra halo rows in GYRE) created by
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GYRE includes hard-coded halo rows, see …
- 15:53 Ticket #2533 (avt_evd is undefined when enhanced vertical diffusion is not used) created by
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avt_evd is undefined when ln_zdfevd == .FALSE., causing uninitialised …
- 15:38 Ticket #2532 (Several bugs in diaptr) created by
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1. timing_stop is not called if l_diaptr == .FALSE.
2. The "zosrf" …
- 15:29 Changeset [13532] by
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remove annoying prints coming from bbl
- 15:15 Ticket #2531 (Incorrect character length declaration in diaobs) created by
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The dummy (cobstypes) and actual (cobstypesprof, cobstypessurf) …
- 14:59 Ticket #2530 (Missing/duplicate diagnostics in ldf_eiv_dia) created by
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The V component of the heat and salt transports due to EIV are not …
- 14:45 Changeset [13531] by
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Change to mppstop to prevent the model hanging when an error occurs.
- 14:38 Ticket #2529 (Incorrect length for IOM "ptr" zoom domain) created by
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When using the "ptr" domain for diaptr output, only the first jpj rows …
- 11:16 Changeset [13530] by
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remove duplicated lines
- 10:34 Changeset [13529] by
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arch: add -init=arrays,snan to intel DEBUG options
- 09:49 Ticket #2528 (mixed up ctl files with SAS in coupled mode) created by
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[…]
==== Context
When using SAS with OASIS, both SAS and OCE …
2020-09-25:
- 18:01 Changeset [13528] by
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add the possibility to store MY_SRC files into subdirectories (for exemple: MY_SRC/ticket#XXXX/*.F90 and MY_SRC/ticket#YYYY/*.F90) by using 'find' instead of 'ls' to search files in MY_SRC
- 18:00 Changeset [13527] by
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trunk: missing parts of [13526] + soem cleaning
- 15:03 Changeset [13526] by
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trunk: minor bugfix to run with strong debugging options
- 14:45 Changeset [13525] by
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updating namelist_top according to nutrient sources from Antarctic Ice Sheet
- 14:30 Changeset [13524] by
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First step of nutrient sources from Antarctic Ice Sheet
- 13:25 Changeset [13523] by
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Create HPC-09 branch - ticket #2367
- 11:01 Changeset [13522] by
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Close to compiling VP
- 08:56 Developers/Validation/r4.0_light edited by
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(diff)
2020-09-24:
- 21:55 2020WP/HPC-02_Daley_Tiling edited by
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(diff)
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September 2020 progress summary
- 20:52 Changeset [13521] by
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Add top level tiling loop
- 20:51 Changeset [13520] by
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Tiling for timing
- 20:51 Changeset [13519] by
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Tiling for DIA routines called by TRA modules
- 20:49 Changeset [13518] by
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Tiling for modules before tra_adv
- 20:42 Changeset [13517] by
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Tiling for modules after tra_ldf
- 20:38 Changeset [13516] by
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Tiling for tra_adv
- 20:32 Changeset [13515] by
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Tiling for tra_ldf
- 20:29 Changeset [13514] by
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Tiling variables, functions and namelist
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Tiling performance results (Sept 2020)
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Description of tiling issues
- 20:06 2020WP/HPC-02_Daley_Tiling edited by
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(diff)
- 14:33 Developers/Validation/trunk_light edited by
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(diff)
- 14:26 Developers/Validation/r4.0_light edited by
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(diff)
- 14:17 Changeset [13513] by
- 13:57 Changeset [13512] by
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#2385 add the possibility of having F grid files / variables (needed for SWE and maybe useful for having the vorticity at the right point)
- 13:37 New topic on News created by
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[training] XIOS training session (4-6 Nov. 2020)
- 10:55 Changeset [13511] by
- 09:45 Changeset [13510] by
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arch: update intel debug options for IRENE and JEANZAY
- 09:24 Changeset [13509] by
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delete temporary sette version: r12931_sette_ticket2366
- 09:21 Changeset [13508] by
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trunk: update svn:externals for sette@13507
- 09:15 Changeset [13507] by
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sette: add missing in ORCA2_ICE_OBS and AGRIF_DEMO_NOAGRIF
- 09:12 Changeset [13506] by
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trunk: avoid unnecessary division by 0 in gls
2020-09-23:
- 16:12 2020WP/KERNEL-06_techene_better_e3_management edited by
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(diff)
- 16:10 Ticket #2527 (Add a symmetric operator for ocean viscosity) created by
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==== Workplan action
In addition to the standard anti-symmetric operator …
- 11:43 Changeset [13505] by
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Get kd490 from spectral optical model.
- 11:41 Changeset [13504] by
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Update for getting kd490 from spectral optical model.
2020-09-22:
- 22:12 Changeset [13503] by
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files copied from dev_r12527_Gurvan_ShallowWater see #2385
- 22:07 Changeset [13502] by
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test for SWE developpement integrated into KERNEL-06_2 see #2385
- 18:43 Changeset [13501] by
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define default value (=0.) for sbc ABL hpgi and hpgj fields when 'not used'
- 15:36 Changeset [13500] by
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branches/UKMO/NEMO_4.0.1_momentum_trends : bug fix for vtrd_zdf term.
- 12:56 Developers/Validation/trunk_light edited by
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(diff)
2020-09-21:
- 20:59 Developers/Validation/trunk_light edited by
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(diff)
- 17:24 Changeset [13499] by
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Update qsr3d diagnostic for spectral case.
- 15:56 Changeset [13498] by
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#2222 1) Define agrif sponge at f-points 2) Correct bathymetry check with vertical refinement just over needed points
- 14:45 Ticket #2525 (missing comments in do loops) closed by
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fixed
- 14:37 Changeset [13497] by
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re-introduce comments that have been erased by loops transformation see #2525
- 12:33 Changeset [13496] by
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Two-way NEMO-ERSEM coupling via chlorophyll field.
- 10:26 Changeset [13495] by
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trunk: avoid one unecessary calculation, almost cosmetics
- 10:26 Changeset [13494] by
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4.0-HEAD: avoid one unecessary calculation, almost cosmetics
- 09:00 Changeset [13493] by
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Some progress on VP rheology but still does not compile
2020-09-18:
- 17:27 Changeset [13492] by
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r4.0-HEAD: avoid to use undefined values in GLS. pass all sette etsts in debug mode
- 15:54 Ticket #2526 (bestpartition in mppini no more working) closed by
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fixed
- 15:11 Developers/Validation/trunk_light edited by
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(diff)
- 09:04 Changeset [13491] by
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trunk: minor bugfix in sbcflx following 13485
- 08:48 Changeset [13490] by
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trunk: fix bestpartition in mppini, see #2526
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Mike's slides on SAC and NDS
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Minutes of NDC meeting 14 Sep 2020
2020-09-17:
- 19:13 Changeset [13489] by
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Merge in previous branch.
- 19:11 Changeset [13488] by
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New branch for updates for FABM v1 and two-way coupling.
- 19:09 Changeset [13487] by
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Merge in previous branch.
- 19:02 Changeset [13486] by
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New branch for updates for FABM v1.
- 15:23 Ticket #2526 (bestpartition in mppini no more working) created by
- 14:59 Ticket #2237 (no/partial/strong slip condition is actually free slip in one-point ...) closed by
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fixed: fixed also in the trunk from r13472
- 14:58 Ticket #2435 (Initialisation top/bottom 'en' value in zdftke) closed by
- 14:49 Ticket #2476 (Missing mixing length parameterization under sea-ice) closed by
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fixed
- 14:49 Ticket #2522 (sbcflx defects) closed by
- 14:45 Changeset [13485] by
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trunk: fix ticket #2522
- 14:45 Changeset [13484] by
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4.0-HEAD: fix ticket #2522
- 10:24 Changeset [13483] by
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trunk: avoid to use undefined values in sbcdcy when nn_hls > 1, following [13460]
2020-09-16:
- 22:14 Developers/Validation/trunk_light edited by
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(diff)
- 21:38 Developers/Validation/trunk_light edited by
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(diff)
- 21:23 Developers/Validation/trunk_light edited by
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(diff)
- 21:17 Developers/Validation/r4.0_light edited by
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(diff)
- 21:09 Changeset [13482] by
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trunk: fix WED025 nameliste_ice_cfg
- 19:14 Changeset [13481] by
- 19:03 Changeset [13480] by
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fix compilation issue in BENCH
- 18:56 Changeset [13479] by
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4.0-HEAD: update agrif routines so that it takes into account the pond lids (forgotten initially)
- 18:37 Changeset [13478] by
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Undo last change.
- 17:26 Ticket #2525 (missing comments in do loops) created by
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==== Context
comments following DO loops on ji, jj, or jk have been lost …
- 17:15 Changeset [13477] by
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trunk: fix the use of ln_drgice_imp
- 15:54 Changeset [13476] by
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trunk: replace last occurences of rau0 by rho0
- 15:40 Changeset [13475] by
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r4_trunk: supress temporary_r4_trunk
- 15:36 Changeset [13474] by
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trunk: update namelist ref, see #2523
- 15:07 Changeset [13473] by
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trunk: add missing link in CANAL, see #2523
- 15:05 Changeset [13472] by
- 12:46 Ticket #2524 (sao_read not compiling) created by
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==== Context
sao_read not compiling
==== Analysis
sao_read is using tsn …
- 11:40 Changeset [13471] by
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r4_trunk: update iceistate.F90 for easy merge…, see #2523
2020-09-15:
- 12:56 Changeset [13470] by
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r4_trunk: second change of DO loops for routines to be merged, see #2523
- 12:49 Changeset [13469] by
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r4_trunk: first change of DO loops for routines to be merged, see #2523
- 11:48 Changeset [13468] by
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Python2.7 to Python3!
- 09:28 Changeset [13467] by
- 09:27 Changeset [13466] by
- 09:02 Changeset [13465] by
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r4_trunk: create temporary merging branch, see #2523
- 08:55 Changeset [13464] by
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remove unnecessary 2020 brabche
2020-09-14:
- 17:40 Changeset [13463] by
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Ticket #2195:update to trunk 13461
- 17:38 Ticket #2195 (HPC-08_XXX_fldread_with_XIOS) reopened by
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Reopen this ticket
- 16:59 Changeset [13462] by
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Tidy up.
- 16:45 Developers/Validation/trunk_light edited by
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(diff)
- 16:41 Developers/Validation/trunk_light edited by
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(diff)
- 16:26 Developers/Validation/trunk_light edited by
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(diff)
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MOI 2020 WP progress
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NDC Agenda & slides Sep 2020
- 10:29 Developers/Validation/trunk_light edited by
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(diff)
- 10:19 Developers/Validation/trunk_light edited by
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(diff)
- 10:17 Developers/Validation/trunk_light edited by
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(diff)
- 09:19 Changeset [13461] by
- 09:16 Changeset [13460] by
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trunk: avoid to use undefined values in sbcblk when nn_hls > 1
- 09:14 Ticket #2523 (phasing 4.0 - trunk) created by
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==== Context
merge r4.0-HEAD developments in the trunk if not already …
2020-09-11:
- 14:45 Developers/Validation/trunk_light edited by
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(diff)
- 14:31 Developers/Validation/trunk_light edited by
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(diff)
- 12:55 Changeset [13459] by
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Fix for getting SWR.
- 12:26 Developers/Validation/r4.0_light edited by
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(diff)
- 12:24 Developers/Validation/trunk_light edited by
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(diff)
- 12:09 Developers/Validation/trunk_light edited by
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(diff)
- 11:40 Developers/Validation/trunk_light edited by
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(diff)
- 11:30 Ticket #2521 (potentially test undefined values in stpctl and other places...) closed by
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fixed: - This bugfix fixes sette errors with ORCA2_SAS_ICE and ICE_AGRIF when …
- 11:22 Changeset [13458] by
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trunk: mpp_min(max)loc testing only inner domain, see #2521
- 11:10 New topic on Tools created by
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[domcfg] NEMO v4 DOMAINcfg tool
- 10:58 Developers/Validation/trunk_light edited by
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(diff)
- 10:45 Developers/Validation/r4.0_light edited by
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(diff)
- 09:56 Developers/Validation/trunk_light edited by
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(diff)
- 09:48 Developers/Validation/r4.0_light edited by
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(diff)
2020-09-10:
- 18:29 Ticket #2520 (Invalid Memory Access in tra_adv_cen) closed by
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fixed
- 17:48 Changeset [13457] by
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fix ticket #2520 in trunk
- 17:42 Changeset [13456] by
- 17:29 Developers/Validation/r4.0_light edited by
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(diff)
- 15:41 Changeset [13455] by
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update MEDUSA externals revision number
- 12:32 Developers Committee edited by
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(diff) - 12:26 Developers Committee/Agenda/2020-09-14 edited by
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(diff)
- 12:25 Developers Committee/Agenda/2020-09-14 created by
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- 11:56 Ticket #2522 (sbcflx defects) created by
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==== Context
The flux formulation (sbcflx) has several defects:
1) The …
- 08:41 Developers/Validation/r4.0_light edited by
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(diff)
- 08:40 Developers/Validation/r4.0_light edited by
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(diff)
2020-09-09:
- 18:01 Ticket #2521 (potentially test undefined values in stpctl and other places...) created by
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==== Context
At least when nn_hls > 1 and in some configurations …
- 09:20 Developers/Validation/r4.0_light edited by
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(diff)
- 08:48 Developers/Validation/trunk_light edited by
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(diff)
2020-09-08:
- 16:40 Developers/Validation/trunk_light edited by
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(diff)
- 15:50 Changeset [13454] by
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Merge in Catherine Guiavarch's change to implement implicit ice drag to improve stability. Her changes were implemented in:
- 13:02 2020WP/KERNEL-03_Storkey_Coward_RK3_stage2 edited by
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(diff)
- 12:53 Developers/Validation/trunk_light edited by
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(diff)
- 12:46 Ticket #2520 (Invalid Memory Access in tra_adv_cen) created by
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[…]
==== Context
There is a memory access error in traadv_cen.F90 …
- 12:38 Changeset [13453] by
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Move more DA calls due to FABM changes.
- 11:54 2020WP/KERNEL-02_Coward_Do Loop Macros_part1 edited by
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(diff)
2020-09-07:
- 18:52 Changeset [13452] by
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Fix for compiling with ifort.
- 18:50 Changeset [13451] by
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Modifications to accommodate interaction between NEMO-FABM coupler only saving diagnostics requested in iodef.xml, and the assimilation and 25h/tmb diagnostic code.
- 16:40 Ticket #2519 (User defined straight open boundary segments and halo size does not work) created by
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==== Context
User defined straight open boundary segments (nambdy_seg …
- 12:01 Changeset [13450] by
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create branch
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Tags VC added
