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2009WP/Release_v3.2 (diff) – NEMO

Changes between Version 57 and Version 58 of 2009WP/Release_v3.2


Ignore:
Timestamp:
2009-11-27T10:05:16+01:00 (14 years ago)
Author:
rblod
Comment:

--

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  • 2009WP/Release_v3.2

    v57 v58  
    66[[BR]] 
    77 
    8 == ""Content"" == 
    9  
    10  * New Physics :  
     8== '''major improvements''' == 
     9 
     10=== New Physics  === 
    1111   * tidal mixing parametrisation (bottom intensification) + Indonesian specific tidal mixing 
    1212   * RGB light penetration + ocean color 
     
    1414   * TKE change in the surface boundary condition, especially in coupled mode (mean stress module send by the atmosphere) 
    1515 
    16  * System simplification 
    17    * Suppression of rigid-lid option and no more island specific treatment 
    18    * Cleaning of lib_mpp 
     16=== System simplification === 
     17    * Suppression of rigid-lid option and no more island specific treatment 
     18    * Cleaning of lib_mpp 
    1919    * SHMEM option has been removed 
    2020    * north fold treatment is now done once for all in a new routine lbcnfd.F909 instead of being duplicated 
    2121    * suppression of redundant east-west communication phase (ORCA grid case) 
    2222 
    23  * IOM for the output 
    24  
    25 Purposes : -        add flexibility for outputs -        eventually use dedicated processors for output 
    26  
    27   Using histwrite is still the default behaviour for safety. Nevertheless, iom_put can be activated with the cpp_key key_iomput and should become the default (only) in the future. 
    28  
    29 Iom_put  allows to distribute and add desired  output fields  everywhere in the code without specific declaration in diawri : Ex : CALL iom_put( "ssh" , sshn ) in sshwzv It is based on : -        a XML-F90 parser, svn  co http://forge.ipsl.jussieu.fr/ioserver/svn/XMLF90 -        an additional library svn co http://forge.ipsl.jussieu.fr/ioserver/svn/XMLIO_SERVER When using modipsl environment, they are extracting automatically with NEMO. Both are delivered under  GPL licence but not under the responsibility of the NEMO team. Actually two levels of functionalities are available :  
    30  
    31 1-        Just use iom_put to output the variable easily  
    32  
    33 2-        Use in addition   dedicated processors for output (server mode), then an additional executable is needed At execution time, when key_iomput has been activated, two additional files are required  (and provided with the standard configuration):  
    34  
    35 -        xmlio_server.def : a namelist to define if we are in server mode or not  
    36  
    37 -        iodef.xml : an xml file to be completed with precision  on the variable called by iom_put in nemo (name for output, frequency, file)  
    38  
    39 In server mode only, user has to define a mpi configuration file  (for instance mpi.conf) looking like:  
    40  
     23=== IOM for the output === 
     24 * Purposes :  
     25      *  add flexibility for outputs 
     26      *  eventually use dedicated processors for output 
     27Using histwrite is still the default behaviour. Nevertheless, iom_put can be activated with the cpp_key key_iomput and should become the default (only) in the future. 
     28Iom_put  allows to distribute and add desired  output fields  everywhere in the code without specific declaration in diawri :  
     29Ex : CALL iom_put( "ssh" , sshn ) in sshwzv [[BR]] 
     30 * Technical requirement 
     31     * a XML-F90 parser, svn  co http://forge.ipsl.jussieu.fr/ioserver/svn/XMLF90   
     32     * an additional library svn co http://forge.ipsl.jussieu.fr/ioserver/svn/XMLIO_SERVER  
     33When using modipsl environment, they are extracting automatically with NEMO. Both are delivered under  GPL licence but not under the responsibility of the NEMO team. Actually two levels of functionalities are available :  
     34 * Functionalities 
     35    *  Just use iom_put to output the variable easily  
     36    *  Use in addition   dedicated processors for output (server mode), then an additional executable is needed (''server mode'') 
     37 
     38 * How to use it : at execution time, when key_iomput has been activated, two additional files are required  (and provided with the standard configuration):  
     39    *  xmlio_server.def : a namelist to define if we are in server mode or not  
     40    *  iodef.xml : an xml file to be completed with precision  on the variable called by iom_put in nemo (name for output, frequency, file)  
     41    *  In server mode only, user has to define a mpi configuration file  (for instance mpi.conf) looking like:  
     42 
     43{{{ 
    4144-p 10 -e ./opa                                 <-------- means 10 cpu for opa 
    42  
    43  -p 2-e ./ioserver                           <--------- means 2 cpu for IO  
    44  
    45 Then mpirun –f mpi.conf IOM for output has been implemented in OPA, TOP, LIM3 and LIM3,  it is tested in NVTK, it is currently not compatible with AGRIF (key_agrif) and not implemented in diaptr. 
    46  
     45-p 2  -e ./ioserver                           <--------- means 2 cpu for IO  
     46}}} 
     47      Then mpirun –f mpi.conf  
     48 
     49 
     50IOM for output has been implemented in OPA, TOP, LIM3 and LIM3,  it is tested in NVTK, it is currently not compatible with AGRIF (key_agrif) and not implemented in diaptr. 
     51 
     52 * Nota 
    4753As a consequence of the code reorganisation, average of output fields have been shift of one time step, for instance with nwrite=5, nit000=1, nitend=10 : Nemo_v3.1: 
    4854 
    49   *-----*-----*-----*-----*-----*-----*-----*-----*-----*-----* 
    50  
    51 Nemo_v3.2 : *-----*-----*-----*-----*-----*-----*-----*-----*-----*-----* 
    52  
    53  * achievement of the coupled interface 
    54  
    55  * VVL reactivation 
     55Nemo_v3.1 :   *-----*-----*-----*-----*-----*-----*-----*-----*-----*-----* 
     56                                     |_______________________________|          |______________________________| 
     57 
     58Nemo_v3.2 :   *-----*-----*-----*-----*-----*-----*-----*-----*-----*-----* 
     59                         |______________________________|          |______________________________| 
     60 
     61  
     62=== achievement of the coupled interface === 
     63 
     64 === VVL reactivation === 
    5665 
    5766  correct bugs and missing calls for variable volume revisit free-surface time-splitting algorithm to reach stability and satisfying results 
     
    6675  ... 
    6776 
    68 == ""Minor bug fixes / enhancements"" == 
     77== '''Minor bug fixes / enhancements''' == 
    6978Ticket in '''bold''' includes some severe BUGs that have to be corrected in the release v3.2.[[BR]] 
    7079