Changes between Version 5 and Version 6 of 2013WP/2013Action_institutions_CNRS


Ignore:
Timestamp:
2012-10-17T14:07:28+02:00 (8 years ago)
Author:
gm
Comment:

Legend:

Unmodified
Added
Removed
Modified
  • 2013WP/2013Action_institutions_CNRS

    v5 v6  
    1919 
    2020|| Action || Brief description || Status || Branch name || Trac ticket n° || Wiki page name || Reviewer(s) || Review status || Nb of weeks || Ready for merge || 
    21 || CNRS-1 || || || || || || || || || || 
     21|| CNRS-1 || coupled interface || ongoing || || || || || || || || 
     22|| CNRS-2 || IO serveur || ongoing || || || || || || || || 
     23|| CNRS-3 || energy diag. || due 2013 || || || || || || || || 
     24|| CNRS-4 || I/O coarsening || due 2013 || || || || || || || || 
     25|| CNRS-5 || TOP documentation || due 2013 || || || || || || || || 
     26|| CNRS-6 || ocean dynamics || due 2013 || || || || || || || || 
     27|| CNRS-7 || LIM evolution || due 2013 || || || || || || || || 
     28|| CNRS-8 || config. setting || due 2013 || || || || || || || || 
     29|| || || || || || || || || || || 
    2230 
    2331---- 
    2432=== '''CNRS-1  - Coupled interface (continuation)''' === 
    25   '''  Motivation: '''  OASIS-MCT interface: MPP version of OASIS coupler. [[BR]]  '''  Status :'''   used in PULSATION project [[BR]]  '''  Main tasks :'''   return back in the system all required NEMO changes[[BR]]  '''  Science Reviewer:'''   [[BR]]  '''  System Reviewer:'''   [[BR]]  '''  Deadline:'''   [[BR]]  '''  Priority:'''   [[BR]]  '''  Depends on:'''   [[BR]]  '''  Principal Investigator : '''  Sebastien Masson (smasson@locean-ipsl.upmc.fr) 
     33  '''   Motivation: '''   OASIS-MCT interface: MPP version of OASIS coupler. [[BR]]   '''   Status :''' developed and used in PULSATION project [[BR]]   '''   Main tasks :'''    return back in the system all required NEMO changes[[BR]]   '''   Science Reviewer:'''    [[BR]]   '''   System Reviewer:'''    [[BR]]   '''   Deadline:'''    [[BR]]   '''   Priority:'''    [[BR]]   '''   Depends on:'''    [[BR]]   '''   Principal Investigator : '''   Sebastien Masson (smasson@locean-ipsl.upmc.fr) 
    2634 
    2735=== ''''''''''' === 
    2836=== '''CNRS-2  - IOSERVER (continuation)''' === 
    29   '''  Motivation:'''   evolution of the new IOM introduced in 2012.[[BR]]  '''  Status :'''  [[BR]]  '''  Main tasks :'''   integrate, debug and benchmark the new version [[BR]]  '''  Science Reviewer:'''   [[BR]]  '''  System Reviewer:'''   [[BR]]  '''  Deadline:'''   [[BR]]  '''  Priority:'''   [[BR]]  '''  Depends on:'''   work done on new IOserver at IPSL[[BR]]  '''  Principal Investigator : '''  Sebastien Masson (smasson@locean-ipsl.upmc.fr) 
     37  '''   Motivation:'''    evolution of the new IOM introduced in 2012.[[BR]]   '''   Status :'''   [[BR]]   '''   Main tasks :'''    integrate, debug and benchmark the new version [[BR]]   '''   Science Reviewer:'''    [[BR]]   '''   System Reviewer:'''    [[BR]]   '''   Deadline:'''    [[BR]]   '''   Priority:'''    [[BR]]   '''   Depends on:'''    work done on new IOserver at IPSL[[BR]]   '''   Principal Investigator : '''   Sebastien Masson (smasson@locean-ipsl.upmc.fr) 
    3038 
    3139=== ''''''''''' === 
    3240=== '''CNRS-3 - Energy diagnostics (end)''' === 
    33   ''' Motivation: ''' output 3D trends of tracers, momentum, kinetic energy and potential energy.[[BR]] ''' Status : ''' almost done'''  ''' (see'''   ''' [https://forge.ipsl.jussieu.fr/nemo/browser/branches/2012/dev_r3309_LOCEAN12_Ediag dev_r3309_LOCEAN12_Ediag] ) Finalisation in 2013.[[BR]] ''' Main tasks :'''  [[BR]] (1) implement the 3D output of tracers and momentum trends (done with validation in 2012)[[BR]] (2) compute and output the 3D trends of PE and KE : vvl case to be validated[[BR]] (3) documentation [[BR]] ''' Science Reviewer:'''  NOCS guy? [[BR]] ''' System Reviewer:'''  NOCS guy? [[BR]] ''' Deadline:'''  [[BR]] ''' Priority:'''  [[BR]] ''' Depends on:'''  gurvan and Fabien disponibilities [[BR]] ''' Principal Investigator : ''' Gurvan Madec and Fabien Roquet (gm@locean-ipsl.upmc.fr) 
     41  '''  Motivation: '''  output 3D trends of tracers, momentum, kinetic energy and potential energy.[[BR]]  '''  Status : '''  almost done'''   '''  (see'''    '''  [https://forge.ipsl.jussieu.fr/nemo/browser/branches/2012/dev_r3309_LOCEAN12_Ediag dev_r3309_LOCEAN12_Ediag]  ) Finalisation in 2013.[[BR]]  '''  Main tasks :'''   [[BR]]  (1) implement the 3D output of tracers and momentum trends (done with validation in 2012)[[BR]]  (2) compute and output the 3D trends of PE and KE : vvl case to be validated[[BR]]  (3) documentation [[BR]]  '''  Science Reviewer:'''   NOCS guy? [[BR]]  '''  System Reviewer:'''   NOCS guy? [[BR]]  '''  Deadline:'''   [[BR]]  '''  Priority:'''   [[BR]]  '''  Depends on:'''   gurvan and Fabien disponibilities [[BR]]  '''  Principal Investigator : ''' Gurvan Madec and Fabien Roquet (gm@locean-ipsl.upmc.fr) 
    3442 
    3543=== ''''''''''' === 
    3644=== '''CNRS -4 - On-line coarsening of TOP (2 years action)''' === 
    37   ''' Motivation: ''' introduce a coarsening of the model resolution on the biogeochemical model (TOP) (Lévy et al. Ocean Modelling, 2012)[[BR]] ''' Status :'''  Part of the EMBRACE FP7 project. Work started in may 2012. The project duration is 2 years, with 2 deliverables in NEMO: 1st year (2013) : on-line coarsening of the ocean outputs ; 2nd year (2014) : on-line coarsening of TOP [[BR]] ''' Main tasks :'''  [[BR]] (1) on-line coarsening of the ocean outputs with a factor of 2 or 3, interfaced with IOM only.[[BR]] ''' Science Reviewer:'''  [[BR]] ''' System Reviewer:'''  [[BR]] ''' Deadline:'''  [[BR]] ''' Priority:'''  [[BR]] ''' Depends on:'''  - [[BR]] ''' Principal Investigator : ''' Gurvan Madec (gm@locean-ipsl.upmc.fr) 
     45  '''  Motivation: '''  introduce a coarsening of the model resolution on the biogeochemical model (TOP) (Lévy et al. Ocean Modelling, 2012)[[BR]]  '''  Status :'''   Part of the EMBRACE FP7 project. Work started in may 2012. The project duration is 2 years, with 2 deliverables in NEMO: 1st year (2013) : on-line coarsening of the ocean outputs ; 2nd year (2014) : on-line coarsening of TOP [[BR]]  '''  Main tasks :'''   [[BR]]  (1) on-line coarsening of the ocean outputs with a factor of 2 or 3, interfaced with IOM only.[[BR]]  '''  Science Reviewer:'''   [[BR]]  '''  System Reviewer:'''   [[BR]]  '''  Deadline:'''   [[BR]]  '''  Priority:'''   [[BR]]  '''  Depends on:'''   - [[BR]]  '''  Principal Investigator : ''' Gurvan Madec (gm@locean-ipsl.upmc.fr) 
    3846 
    3947=== ''''''''''' === 
    40 === '''CNRS -3 - reference manuels (continuation)''' === 
    41   '''  Motivation: '''  paper documentation, a never-ending story[[BR]]  '''  Status :'''   [[BR]]  '''  Main tasks :'''   [[BR]]  (1) Create the TOP documentation (TRP + interface to bio-model) using Latex (similar to the NEMO ocean engine documentation)[[BR]]  (2) review of the written documentation (NOCS team) [[BR]]  '''  Science Reviewer:'''   [[BR]]  '''  System Reviewer:'''   [[BR]]  '''  Deadline:'''   [[BR]]  '''  Priority:'''   [[BR]]  '''  Depends on:'''   - [[BR]]  '''  Principal Investigator : '''  Christian Ethé (Christian.Ethe@lsce.ipsl.fr) 
     48=== '''CNRS-5 - reference manuels (continuation)''' === 
     49  '''   Motivation: '''   paper documentation, a never-ending story[[BR]]   '''   Status :'''    [[BR]]   '''   Main tasks :'''    [[BR]]   (1) Create the TOP documentation (TRP + interface to bio-model) using Latex (similar to the NEMO ocean engine documentation)[[BR]]   (2) review of the written documentation (NOCS team) [[BR]]   '''   Science Reviewer:'''    [[BR]]   '''   System Reviewer:'''    [[BR]]   '''   Deadline:'''    [[BR]]   '''   Priority:'''    [[BR]]   '''   Depends on:'''    - [[BR]]   '''   Principal Investigator : '''   Christian Ethé (Christian.Ethe@lsce.ipsl.fr) 
    4250 
    4351=== ''''''''''' === 
    44 === '''CNRS .5 - Internal evolution of the ocean dynamics''' === 
    45   '''  Motivation: '''  improvement of some aspect of the ocean dynamics[[BR]]  '''  Status :'''   conception done [[BR]]  '''  Main tasks :'''   [[BR]]  (1) implicit bottom friction: change the order of call : dynspg 1st, then dynzdf[[BR]]  (2) momentum advection (all dynadv modules, dynspg_ts) : ensure the consistency between non-linear free surface (vvl) and vector invariant / flux form for non linear terms of the momentum equation[[BR]]  (3) horizontal pressure gradient in density anomalie and its impact on dynspg_ts (Marsaleix et al 2008) (all dynspg modules in particular dynspg_ts, dynhpg)[[BR]]  NB: - grouped in one task as they involved common modules[[BR]]       - need not only test cases but also realistic one: ORCA12 with vvl (NOCS).[[BR]]  '''  Science Reviewer: '''  G. Nurser (?)[[BR]]  '''  System Reviewer:'''   NOCS (?)[[BR]]  '''  Deadline:'''   [[BR]]  '''  Priority:'''   [[BR]]  '''  Depends on:'''   - [[BR]]  '''  Principal Investigator : '''  Gurvan Madec (gm@locean-ipsl.upmc.fr) 
    46    
     52=== '''CNRS-6 - Internal evolution of the ocean dynamics''' === 
     53  '''   Motivation: '''   improvement of some aspect of the ocean dynamics[[BR]]   '''   Status :'''    conception done [[BR]]   '''   Main tasks :'''    [[BR]]   (1) implicit bottom friction: change the order of call : dynspg 1st, then dynzdf[[BR]]   (2) momentum advection (all dynadv modules, dynspg_ts) : ensure the consistency between non-linear free surface (vvl) and vector invariant / flux form for non linear terms of the momentum equation[[BR]]   (3) horizontal pressure gradient in density anomalie and its impact on dynspg_ts (Marsaleix et al 2008) (all dynspg modules in particular dynspg_ts, dynhpg)[[BR]]   NB: - grouped in one task as they involved common modules[[BR]]        - need not only test cases but also realistic one: ORCA12 with vvl (NOCS).[[BR]]   '''   Science Reviewer: '''   G. Nurser (?)[[BR]]   '''   System Reviewer:'''    NOCS (?)[[BR]]   '''   Deadline:'''    [[BR]]   '''   Priority:'''    [[BR]]   '''   Depends on:'''    - [[BR]]   '''   Principal Investigator : '''   Gurvan Madec (gm@locean-ipsl.upmc.fr) 
    4754 
    48 Item on LIM3 to be described 
     55=== '''CNRS-7 - LIM evolution''' === 
     56  '''Motivation: '''LIM3 as the only sea-ice model in the reference and LIM3 evolution[[BR]]'''Status :'''[[BR]]'''Main tasks :''' [[BR]](1) merge LIM2/LIM3 (i.e. LIM3 mono category gives almost same results as LIM2) and remove LIM2 in 2013 or 2014.[[BR]](2) optimization: diagnose where it cost the most and try to improve the situation[[BR]](3) update of EVP rheology (Bouillon et al 2012s)[[BR]](4) LIM3 coupled interface [[BR]](5) ice-ocean interface: rewrite from a ice point of view the ice-ocean heat, salt and radiation exchanges ; assess the energy, salt and water conservation. [[BR]](6) introduce an arbitrary number of tracers (today only "age")[[BR]]'''Science Reviewer: '''[[BR]]'''System Reviewer:''' [[BR]]'''Deadline:''' [[BR]]'''Priority:''' [[BR]]'''Depends on:''' - [[BR]]'''Principal Investigator : '''Martin Vancoppenolle (martin.vancoppenolle@locean-ipsl.upmc.fr) 
    4957 
    50 item Evolution of configuration setting (Namelist) to be described 
     58=== '''CNRS-8 - Configuration setting''' === 
     59  '''Motivation: [[BR]]'''- whole namelist in all standard configuration: heavy to make any changes, diffucult to see the specificities of a configuration, and default values for namelist hard coded in the code, but never used !   ==> Standard namelist at CONFIG/namlist, the namelist in CONFIG/MY_CFG/EXP1/namlist only contains the changes from default value     [[BR]]- global model size not in the namelist but still in many par_....h90  ==> put all this in the namelist[[BR]]- several old non-doctor namelist variable names still in the code  ==> to be suppressed[[BR]]'''Status : '''-[[BR]]'''Main tasks :''' see the motivation[[BR]]'''Science Reviewer: '''[[BR]]'''System Reviewer:''' [[BR]]'''Deadline:''' [[BR]]'''Priority:''' [[BR]]'''Depends on:''' - [[BR]]'''Principal Investigator : '''Claire Levy (claire.levy@locean-ipsl.upmc.fr) 
    5160 
    52 === '''Pending issues ''' === 
    53 === ''' 1 - new vertical coordinate ''' === 
    54   '''Motivation: '''introduce an arbitrary lagrangian eulerian coordinate to reduce spurious diapycnal mixing due to high frequency vertical variations[[BR]]'''Status :''' done in a phd thesis, see Leclair 2010[[BR]]'''Main tasks :''' update for the new NEMO version [[BR]]'''Depends on:''' an unknown man power 
     61=== '''''' === 
     62=== Pending issues === 
     63=== '''        1 - new vertical coordinate ''' === 
     64  ''' Motivation: ''' introduce an arbitrary lagrangian eulerian coordinate to reduce spurious diapycnal mixing due to high frequency vertical variations[[BR]] ''' Status :'''  done in a phd thesis, see Leclair 2010[[BR]] ''' Main tasks :'''  update for the new NEMO version [[BR]] ''' Depends on:'''  an unknown man power 
    5565 
    56   [[BR]]'''2 - Compact vertical advection scheme''' 
    57     '''Motivation: '''Compact schemes have the particularity to be of high order but compact in space [[BR]]'''Status :''' Developed for NEMO version 3.1 (L. Debreu) [[BR]]'''Main tasks :''' [[BR]](1) adaptation to current version[[BR]](2) validation and documentation [[BR]]'''Depends on:''' an unknown man power 
     66'''2 - Compact vertical advection scheme'''[[BR]] 
     67  '''Motivation: ''' Compact schemes have the particularity to be of high order but compact in space [[BR]]'''Status :'''  Developed for NEMO version 3.1 (L. Debreu) [[BR]]'''Main tasks :''' adaptation to current version ; validation and documentation [[BR]]'''Depends on:'''  an unknown man power 
     68 
    5869=== '''3 - KPP scheme''' === 
    59     '''Motivation: '''KPP (K profile parametrization is widely used in ocean models to compute vertical mixing coefficients. Current version implemented in NEMO is old and unmaintained, furthermore, KPP has been redesigned for ROMS model to improve the regularity of the solution (better numerics) [[BR]]'''Status :''' Implemented in ROMS (UCLA) by F. Lemarié et al. (Ocean Modeling in press)[[BR]]'''Principal Investigator : '''an unknown man power  
    60     '''''' 
    61 '''4 - Rotated bilaplacian'''[[BR]] 
    62      
    63 '''Motivation: '''Rotated biharmhonic diffusion operator. This we would be able to use it in the isopycnal direction, and this operator would also be particularly suitable for s-coordinate [[BR]]'''Status :''' Implemented in ROMS (UCLA) by F. Lemarié et al. (Ocean Modeling in press) [[BR]]    '''Principal Investigator : '''an unknown man power  
    64      
    65    
     70  ''' Motivation: ''' KPP (K profile parametrization is widely used in ocean models to compute vertical mixing coefficients. Current version implemented in NEMO is old and unmaintained, furthermore, KPP has been redesigned for ROMS model to improve the regularity of the solution (better numerics) [[BR]] ''' Status :'''  Implemented in ROMS (UCLA) by F. Lemarié et al. (Ocean Modeling in press)[[BR]] ''' Principal Investigator : ''' an unknown man power  ''''' '''''' 
    6671 
    67   
     72'''4 - Rotated bilaplacian''' 
     73 
     74  '''Motivation: '''Rotated biharmhonic diffusion operator. This we would be able to use it in the isopycnal direction, and this operator would also be particularly suitable for s-coordinate[[BR]]'''Status :''' Implemented in ROMS (UCLA) by F. Lemarié et al. (Ocean Modeling in press)[[BR]]'''Principal Investigator : '''an unknown man power