== Get the code  ==

{{{#!sh
# my login
me=smasson
# svn path to NEMO trunk
svnpath=svn+ssh://${me}@forge.ipsl.jussieu.fr/ipsl/forge/projets/nemo/svn/NEMO/trunk
# get the revision number of the HEAD
rev=$( svn info $svnpath | grep "Last Changed Rev" | sed -e "s/.*: *//" )
# directory name given to the local trunk
dirnemo=trunk_test_perf_${rev}
# checkout the trunk into $dirnemo
svn co $svnpath $dirnemo
#
cd $dirnemo
#
}}}

== Prepare and compile the tests ==
 
  - [./step_by_step step by step method with all the shell instructions]
  - [./quicker quicker method with an input tarfile]  No more compatible I guess... you better use the step-by-step procedure...



== link the input files files  ==
ORCA2_ICE_v4.x.gz is available 
 - on Seb cloud: [https://owncloud.locean-ipsl.upmc.fr/index.php/s/rIYPabNR7m74J0T here] 
 - on Jean-Zay : /gpfsstore/rech/fqx/reee217/input_nemo_v4.0
 - on Irene : /ccc/store/cont005/ra0542/massons/input_nemo_v4.0
Ice_initialization.nc  is available 
 - on Clément cloud: [https://owncloud.locean-ipsl.upmc.fr/index.php/s/OV9nRKCmCnIleHU here] 
 - on Jean-Zay : /gpfsstore/rech/fqx/reee217/input_nemo_v4.0
 - on Irene : /ccc/store/cont005/ra0542/massons/input_nemo_v4.0

{{{#!sh
# define path to ORCA2_ICE_v4.x directory. For example:
#dirdata=/ccc/scratch/cont005/ra0542/massons/input_nemo_v4.0/ORCA2_ICE_v4.x
#dirdata=/gpfsscratch/rech/fqx/reee217/input_nemo_v4.0/ORCA2_ICE_v4.x
dirdata=...

# add the new Ice_initialization file to this directory
mv Ice_initialization.nc $dirdata

# link the input files
for dd in cfgs/ORCA2_*/EXP00
do
    cd $dd
    ln -sf $dirdata/* .
    cd -
done
}}}

== Run!  ==

see the 2 examples of jobs: [attachment:jobaps_irene.sh] or [attachment:jobaps_jeanzay.sh]

{{{#!sh
#export qs=sbatch
for dd in cfgs/ORCA2_*/EXP00
do
    \cp jobaps.sh $dd/. # get jobaps.sh from the attached files
    cd $dd
    qs jobaps.sh  # define qs alias is not already done...
    cd -
done
}}}

== Check the runs did 5840 time steps  ==

{{{#!sh
for ff in cfgs/ORCA2_*/EXP00/time.step
do
    echo "$ff: $( cat $ff)"
done
}}}

== Create aps reports  ==

{{{#!sh
for dd in cfgs/ORCA2_*/EXP00
do
    cd $dd
    yyyymmdd=$( date +%Y%m%d )
    hhmmss=$( date +%H%M%S )
    rptname=aps_result_${yyyymmdd}_${hhmmss}.txt
    module list > $rptname   # add the list of modules in the report
    echo >> $rptname
    aps-report aps_result_${yyyymmdd} >> $rptname
    cd -
done
}}}

== Create gnu plots from timing.output ==

{{{#!sh
#module load gnuplot
for dd in cfgs/ORCA2_*/EXP00
do
    cd $dd
    grep " timing step" timing.output | sed -e "s/.*: *//" | gnuplot -p -e 'set yrange [0.0:0.5] ; set title "trunk r'${rev}'" ; plot "/dev/stdin"'
    cd -
done
}}}