= Reference publications and Documentation on-line

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Last edition: '''[[Wikinfo(changed_ts)]]''' by '''[[Wikinfo(changed_by)]]'''

== Reference publications
''To be quoted in all publications using NEMO''

=== For latest release nemo_v3_6_STABLE:

* NEMO reference manual 3_6_STABLE : Gurvan Madec, and the NEMO team: "NEMO ocean engine". Note du Pôle de modélisation, Institut Pierre-Simon Laplace (IPSL), France, No 27 ISSN No 1288-1619. (an HTML version is available in the NEMO Forge)

* PISCES-v2: an ocean biogeochemical model for carbon and ecosystem studies O. Aumont, C. Ethé, A. Tagliabue, L. Bopp, and M. Gehlen Geosci. Model Dev., 8, 2465-2513, 2015

* Vancoppenolle M., Fichefet, T., Goosse, H., Bouillon, S., Madec, G., & Morales Maqueda, M. A. 2009: "Simulating the mass balance and salinity of Arctic and Antarctic sea ice. 1. Model description and validation". Ocean Modelling, 2009, 27 (1-2), 33-53  (http://www.sciencedirect.com/science/article/pii/S1463500308001613).
* Rousset, C., Vancoppenolle, M., Madec, G., Fichefet, T., Flavoni, S., Barthélemy, A., Benshila, R., Chanut, J., Levy, C., Masson, S., and Vivier, F. 2015: "The Louvain-La-Neuve sea ice model LIM3.6: global and regional capabilities". Geosci. Model Dev., 8, 2991-3005, doi:10.5194/gmd-8-2991-2015. (http://www.geosci-model-dev-discuss.net/8/3403/2015/gmdd-8-3403-2015.html).

=== For NEMO Tangent and Adjoint Models:

Reference publication for NEMOTAM:

* NEMOTAM: tangent and adjoint models for the ocean modelling platform NEMO, A. Vidard, P.-A. Bouttier, and F. Vigilant, Geosci. Model Dev., 8, 1245-1257, 2015 http://www.geosci-model-dev.net/8/1245/2015/gmd-8-1245-2015.html

=== Other NEMO Publications manuals and documentation:

* All the papers published in NEMO Geoscientific Model Development Special Issue: http://www.geosci-model-dev.net/special_issue40.html
* [attachment:wiki:WebDoc:NEMO_coding.conv_v3.pdf NEMO coding conventions v3 - March 2011] 
* [attachment:wiki:WebDoc:trdvor.pdf Vorticity diagnostics documentation]
* [attachment:wiki:WebDoc:doc_lobster_co2.pdf The LOBSTER biogeochemical model documentation]
* [attachment:wiki:WebDoc:equations eq_pisces.pdf The PISCES biogeochemical model]
* [attachment:wiki:WebDoc:Technical_report_NEMO_1D.pdf The 1D vertical option documentation]
* [attachment:wiki:WebDoc:prtctl_NEMO_doc_v2.pdf The control print option documentation]
* [attachment:wiki:WebDoc:iom_v2.2.pdf The IOM package]
* [attachment:wiki:WebDoc:CEthe_NEMO_um_2006.pdf The grid degradation for speed-up passive tracers simulation]
* [attachment:wiki:WebDoc:extra_halo.pdf The SOR solver with extra outer halo]
* [attachment:wiki:WebDoc:NEMO_vvl_report.pdf The free surface and variable volume in the NEMO code]
* [attachment:wiki:WebDoc:opa_sas_tr.pdf The OASIS coupling between OPA and SAS (LIM3)] 

=== Previous releases
* For NEMO dynamics
   - NEMO reference manual 3_4_STABLE : Madec G. 2008: "NEMO ocean engine". Note du Pôle de modélisation, Institut Pierre-Simon Laplace (IPSL), France, No 27 ISSN No 1288-1619.
   -  NEMO Reference Manual v3_3 - Jan. 2011
   -  NEMO Reference Manual v3_2 - July 2010
   -  NEMO Reference Manual v3_1 - Nov. 2008
   - OPA Reference manual: Madec, G., Delecluse P., Imbard M., and Lévy C., 1998: "OPA 8.1 Ocean General Circulation Model reference manual". Note du Pole de modélisation, Institut Pierre-Simon Laplace (IPSL), France, No11, 91pp.Doc_OPA8.1.pdf1.53

* For LIM3:
  - Vancoppenolle M., Bouillon S., Fichefet T., Goosse H., Lecomte O., Morales Maqueda M.A., and Madec G., 2012 :" LIM The Louvain-la-Neuve sea Ice Model". Note du Pole de modélisation, Institut Pierre-Simon Laplace (IPSL), France, No 31 ISSN No 1288-1619.
  - Estublier, A., et M. Lévy, 2000: "Quel schéma numérique pour le transport d'organismes biologiques par la circulation océanique". Note Techniques du Pôle de modélisation, Institut Pierre-Simon Laplace (IPSL), 81pp.

* For the LIM2 version of sea-ice model,
   - Fichefet, T., and M.A. Morales Maqueda, 1997: "Sensitivity of a global sea ice model to the treatment of ice thermodynamics and dynamics" J. Geophys. Res., 102, 12,60912,646.
   -  Goosse, H., and T. Fichefet, 1999: "Importance of ice-ocean interactions for the global ocean circulation: A model study". J. Geophys. Res., 104, 23,33723,355.

== Reference Manuals on-line (html)
* [doxygen:NEMO/]
* [doxygen:]

== Miscellaneous
* [doxygen:doxygen/]