= Glossary [[PageOutline(2)]] Last edition: '''[[Wikinfo(changed_ts)]]''' by '''[[Wikinfo(changed_by)]]''' The following definitions will be automatically converted into HTML elements each time the related words will be find in the web page. It means that they will be appeared as HTML tooltips when a user move his mouse over and the word will be clickable if a URL given. {{{ || Acronym || Description ||[ URL || [URL~$] ||] }}} == General || API || Application Programming Interface || || CPP || C PreProcessor || || HPC || High Performance Computing || || IO || Inputs/Outputs || || MPI || Message Passing Interface || == Online database || ADS || Astrophysics Data System, digital library portal for researchers in astronomy and physics || http://www.adsabs.harvard.edu || || HAL || Open archive of scholarly documents from all academic fields (FR) || http://hal.archives-ouvertes.fr || == Ocean Modelling || CMIP || Coupled Model Intercomparison Project, standard experimental protocol to evaluate performance and identify errors between modeling centers || http://cmip-pcmdi.llnl.gov || || CORE || Coordinated Ocean-ice Reference Experiments, research project in the modelling community to help facilitate simulation comparisons || http://www.clivar.org/omdp/core || == Licenses | Models | Softwares || AGRIF || Adaptive Grid Refinement In Fortran, package for the integration of full adaptive mesh refinement features within a multidimensional finite difference model || http://agrif.imag.fr || || BFM || Biogeochemical Flux Model, for the simulation of the dynamics of major biogeochemical properties in marine ecosystems || http://bfm-community.eu || || CeCILL || Free software license compatible with GNU GPL and compliant with French law || http://www.cecill.info/index.en.html || || CICE || Los Alamos sea ice model, component for use in fully coupled atmosphere-ice-ocean-land global circulation models || http://oceans11.lanl.gov/trac/CICE || || CDO || Climate Data Operators, collection of command line operators to manipulate and analyse Climate and NWP model Data || https://code.mpimet.mpg.de/projects/cdo || || FCM || Flexible Configuration Manager, Fortran build system and wrappers to SVN for scientific software development || http://metomi.github.io/fcm || || OASIS || Ocean Atmosphere Sea Ice Soil, coupling software to synchronize numerical codes representing different components of the climate system || http://verc.enes.org/oasis || || PISCES || Pelagic Interaction Scheme for Carbon and Ecosystem Studies, biogeochemical model simulating marine ecosystems, cycles of carbon and the main nutrients || || || SI3 || Sea Ice modelling Integrated Initiative, unified sea ice model merging functionalities from CICE, GELATO and LIM into the NEMO framework || || || SVN || SubVersioN, open source version control system for sharing, managing content and its changes over time || http://subversion.apache.org || || Trac || Wiki and issue tracking system for software development projects providing an interface to version control system || http://trac.edgewall.org || || XIOS || Xml Inputs Outputs Server, library dedicated to input/output management of climate code || http://forge.ipsl.jussieu.fr/ioserver || == Institutes | Laboratories | Universities || CEA || Alternatives energies and atomic energy commission (FR), public government-funded research organisation || http://www.cea.fr || || CMCC || Non-profit research institution investigating and modeling the climate system and its interactions with society and the environment (IT) || http://www.cmcc.it || || CNRM || National Centre for Meteorological Research (FR), Météo France and CNRS R&D partnership on the atmosphere, its interfaces and key processes || http://www.umr-cnrm.fr || || CNRS || National Centre for Scientific Research, French largest governmental research organisation || http://www.cnrs.fr || || IDRIS || Institute for Development and Resources in Intensive Scientific computing (FR), centre of both high performance computing resources and expertise || http://www.idris.fr || || IGE || Public research laboratory in Earth and Environmental Sciences on climate, the water cycle, cryosphere and natural and anthropized environments (FR) || http://www.ige-grenoble.fr || || INGV || Institution gathering all scientific and technical institutions operating in geophysics and volcanology (IT) || http://www.ingv.it || || INRIA || National Institute for computer science and applied mathematics (FR) || http://www.inria.fr || || INSU || Institute for engineering and systems sciences within CNRS (FR) || http://www.insu.cnrs.fr || || IPSL || Federation of 9 public research laboratories involved in research on terrestrial and planetary environments (FR) || http://www.ipsl.fr || || LGGE || Research laboratory focuses on snow and ice, glaciers, climate and environment (FR) || http://www.ige-grenoble.fr || || Mercator_Océan || Privately-owned non-profit company providing operational ocean forecast services (FR) || http://www.mercator-ocean.fr || || MOI || Mercator Océan, privately-owned non-profit company providing operational ocean forecast services (FR) || http://www.mercator-ocean.fr || || Met_Office || Meteorological Office (UK), national executive agency and trading fund providing weather and climate services || http://www.metoffice.gov.uk || || NERC || Natural Environment Research Council, British largest funder of research, training and innovation in environmental science || http://www.nerc.ac.uk || || NOC || National Oceanography Centre (UK), NERC institute for marine science research and technology || http://noc.ac.uk || || RENATER || National telecommunications network for research and education (FR) || http://www.renater.fr || || UKMO || Meteorological Office (UK), national executive agency and trading fund providing weather and climate services || http://www.metoffice.gov.uk || || UNIBO || University of Bologna (IT) || http://www.unibo.it || == HPC || Ada || Sandy Bridge IBM supercomputer of IDRIS (FR), 233 TFLOPS peak || http://www.idris.fr/eng/ada/hw-ada-eng.html || || Curie || Sandy Bridge Bull supercomputer of CEA (FR), 1,5 PFLOPS peak || http://www-hpc.cea.fr/en/complexe/tgcc-curie.htm || || TGCC || HPC center of CEA (FR) || http://www-hpc.cea.fr/en/complexe/tgcc.htm || == NEMO (in progress) {{{#!comment {{{#!Fold title='Acronyms' tag=h3 }}} }}} || AMM12 || Atlantic Margin Model with 12kms horizontal resolution || || BBL || Bottom Boundary Layer || || BGC || Bio-Geo Chemical || || BFR || Bottom FRiction || || CLIO || Coupled Large-scale Ice Ocean || || DMP || Damping || || DOC || DOCumentation || || DTA || DaTA || || EEN || Energy & ENstrophy || || ENV || ENVironment || || EOS || Equation Of State || || FCT || Flux Corrected Transport || || GLS || Generic Length Scale || || HDF || Horizontal DiFfusion || || HPG || Horizontal Pressure Gradient || || IAU || Incremental Analysis Updating || || IOF || Interpolation On the Fly || || ISF || Ice ShelF || || KPP || K-Profile Parameterization || || LIM || Louvain-la-neuve sea Ice Model || || LOBSTER || Lodyc Ocean Biogeochemical System for Ecosystem and Resources || || MP || Merge Party || || MPP || Massive Parallel Processing || || MSF || Meridional Stream Function || || NEMOVAR || NEMO VARiational data assimilation || || OBC || Open Boundary Conditions || || OFF || OFFline || || ORCA || Tripolar grid, with special north fold boundary condition || || OPA || Ocean general circulation model || || QSR || Q? Solar Radiation || || SAS || Stand-Alone Surface || || SPG || Surface Pressure Gradient || || SSH || Sea Surface Height || || SSS || Sea Surface Salinity || || SST || Sea Surface Temperature || || ST || System Team || || TAM || Tangent and Adjoint Model || || TKE || Turbulent Kinetic Energy || || TOP || Tracers in the Ocean Paradigm, on/off-line ocean tracer and biochemistry models || || TVD || Total Variation Diminishing || || WAD || Wetting And Drying || || WG || Working Group || || WN || Vertical velocity || || WP || Work Plan || || ZAD || Z (vertical) ADvection || ==== OCE directories || ASM || Assimilation || || BDY || BoundDarY || || C1D || Cfg.1 Dim || || CRS || CoaRSening || || DIA || Diagnostics || || DIU || DIUrnal || || DOM || DOMain || || DYN || DYNamics || || FLO || FLOats || || ICB || ICeBerg || || IOM || Inputs-Outputs Manager || || LBC || Lateral Boundary Condition || || LDF || Lateral DiFfusion || || OBS || OBServations || || SBC || Surface Boundary Conditions || || STO || STOchastic parametrization || || TRA || TRAcers || || TRD || TRenDs || || USR || USeR || || ZDF || Z (vertical) DiFfusion || ==== TOP directories || AGE || Water age tracking || || C14 || Radiocarbon passive tracer (natural + bomb) || || CFC || Inert carbon tracers (CFC11,CFC12, SF6) || || MY_TRC || Template for creation of new modules and ext. BGC models coupling || || TRP || Interface to NEMO physical core for computing tracers transport || ==== PISCES directories || P2Z || 1 Phyto-plankton + 1 Zoo-plankton || || P4Z || 2 Phyto-planktons + 2 Zoo-planktons || || SED || SEDiments || \\ {{{#!comment }}} {{{#!comment {{{#!Fold title='CPP keys list' tag=h3 }}} }}} || key_agrif || AGRIF zoom || || key_asminc || Assimilation increments || || key_c1d || 1D column configuration || || key_cice || CICE sea-ice model || || key_cice4 || ? || || key_cyclone || Tropical cyclones || || key_diadct || Section transports || || key_diaharm || Tidal harmonic analysis || || key_diahth || Thermocline depth diagnostic || || key_diainstant || ? || || key_floats || Drifting float trajectories || || key_iomput || IO library || || key_mpp_mpi || MPI massively parallel processing || || key_nemocice_decomp || ? || || key_netcdf4 || NetCDF4 chunking & compression || || key_nosignedzero || No signed zero number representation || || key_oa3mct_v3 || OASIS3-MCT version 3 || || key_oasis3 || OASIS3 coupling || || key_sed || Sediment || || key_sed_off || ? || || key_si3 || SI3 sea-ice model || || key_top || TOP online bio-models || || key_trdmxl_trc || Mixed layer trends diagnostics || || key_trdtrc || 3D trend diagnostics || || key_vectopt_loop || ? || || key_vertical || ? || {{{#!comment }}} {{{#!comment {{{#!Fold title='Restart parameters' tag=h3 }}} }}} {{{#!comment cdo infon O2IP_trust_00000990_restart_trc.nc 2> /dev/null \ | awk '( NR > 1 ) {print $NF}' | uniq \ | for param in `cat -`; do printf "|| $param || "; grep -rh --exclude-dir=.svn "REAL.*[ ,]$param[ ,]" ../../../../working_copies/NEMO/trunk/src \ | cut -d! -f2 | xargs -I{} echo {}' ||'; echo; done }}} ==== OCE || nav_lon || || || nav_lat || || || ssu_m || mean (nn_fsbc time-step) surface sea i-current (U-point) [m/s] || || ssv_m || mean (nn_fsbc time-step) surface sea j-current (V-point) [m/s] || || sst_m || mean (nn_fsbc time-step) surface sea temperature [Celsius] || || sss_m || mean (nn_fsbc time-step) surface sea salinity [psu] || || ssh_m || mean (nn_fsbc time-step) sea surface height [m] || || e3t_m || mean (nn_fsbc time-step) sea surface layer thickness [m] || || frq_m || mean (nn_fsbc time-step) fraction of solar net radiation absorbed in the 1st T level [-] || || rnf_b || river runoff [Kg/m2/s] || || rnf_hc_b || || || rnf_sc_b || || || utau_b || sea surface i-stress (ocean referential) [N/m2] || || vtau_b || sea surface j-stress (ocean referential) [N/m2] || || qns_b || sea heat flux: non solar [W/m2] || || emp_b || freshwater budget: volume flux [Kg/m2/s] || || sfx_b || salt flux [PSU/m2/s] || || en || now turbulent kinetic energy [m2/s2] || || avt_k || Kz computed by turbulent closure alone [m2/s] || || avm_k || Kz computed by turbulent closure alone [m2/s] || || dissl || now mixing lenght of dissipation || || ub2_b || Half step fluxes (ln_bt_fw=T) || || vb2_b || Half step fluxes (ln_bt_fw=T) || || un_bf || Asselin filtered half step fluxes (ln_bt_fw=T) || || vn_bf || Asselin filtered half step fluxes (ln_bt_fw=T) || || sbc_hc_b || || || sbc_sc_b || || || qsr_hc_b || heat content trend due to qsr flux [K.m/s] jpi,jpj,jpk || || fraqsr_1lev || fraction of solar net radiation absorbed in the first ocean level [-] || || e3t_b || t- vert. scale factor [m] || || e3t_n || t- vert. scale factor [m] || || ub || i-horizontal velocity [m/s] || || vb || j-horizontal velocity [m/s] || || tb || || || sb || || || sshb || sea surface height at t-point [m] || || un || i-horizontal velocity [m/s] || || vn || j-horizontal velocity [m/s] || || tn || || || sn || || || sshn || sea surface height at t-point [m] || || rhop || potential volumic mass [kg/m3] || ==== ICE || stress1_i || 1st, 2nd & diagonal stress tensor element || || stress2_i || 1st, 2nd & diagonal stress tensor element || || stress12_i || 1st, 2nd & diagonal stress tensor element || || snwice_mass || mass of snow and ice at current ice time step [Kg/m2] || || snwice_mass_b || mass of snow and ice at previous ice time step [Kg/m2] || || v_i || Ice volume per unit area (m) || || v_s || Snow volume per unit area(m) || || sv_i || Sea-Ice Bulk salinity times volume per area (ppt.m) || || oa_i || Sea-Ice Age times ice area (s) || || a_i || Ice fractional areas (concentration) || || t_su || Sea-Ice Surface Temperature (K) || || a_ip || melt pond fraction per grid cell area || || v_ip || melt pond volume per grid cell area [m] || || e_s_l01 || || || e_i_l01 || || || e_i_l02 || || || u_ice || components of the ice velocity (m/s) || || v_ice || components of the ice velocity (m/s) || ==== TRC || PH || ? || || Silicalim || ? || || Silicamax || ? || || TRNDIC || ? || || TRNAlkalini || ? || || TRNO2 || ? || || TRNCaCO3 || ? || || TRNPO4 || ? || || TRNPOC || ? || || TRNSi || ? || || TRNPHY || ? || || TRNZOO || ? || || TRNDOC || ? || || TRNPHY2 || ? || || TRNZOO2 || ? || || TRNDSi || ? || || TRNFer || ? || || TRNBFe || ? || || TRNGOC || ? || || TRNSFe || ? || || TRNDFe || ? || || TRNGSi || ? || || TRNNFe || ? || || TRNNCHL || ? || || TRNDCHL || ? || || TRNNO3 || ? || || TRNNH4 || ? || || TRBDIC || ? || || TRBAlkalini || ? || || TRBO2 || ? || || TRBCaCO3 || ? || || TRBPO4 || ? || || TRBPOC || ? || || TRBSi || ? || || TRBPHY || ? || || TRBZOO || ? || || TRBDOC || ? || || TRBPHY2 || ? || || TRBZOO2 || ? || || TRBDSi || ? || || TRBFer || ? || || TRBBFe || ? || || TRBGOC || ? || || TRBSFe || ? || || TRBDFe || ? || || TRBGSi || ? || || TRBNFe || ? || || TRBNCHL || ? || || TRBDCHL || ? || || TRBNO3 || ? || || TRBNH4 || ? || {{{#!comment }}}