= Glossary The following definitions will be automatically converted into HTML elements each time the related words will be find in the web page. It means that they will be appeared as HTML tooltips when a user move his mouse over and the word will be clickable if a URL given. == General acronyms/words with URL (in progress) ||= Acronym =||= Description =||= URL =|| || Ada || Sandy Bridge IBM supercomputer of IDRIS (FR), 233 TFLOPS peak => http://www.idris.fr/eng/ada/hw-ada-eng.html || || || ADS || Astrophysics Data System, digital library portal for researchers in astronomy and physics || http://www.adsabs.harvard.edu || || AGRIF || Adaptive Grid Refinement In Fortran, package for the integration of full adaptive mesh refinement features within a multidimensional finite difference model || http://agrif.imag.fr || || API || Application Programming Interface, defined methods of communication between various software components || || || BFM || Biogeochemical Flux Model, for the simulation of the dynamics of major biogeochemical properties in marine ecosystems || http://bfm-community.eu || || CDO || Climate Data Operators, collection of command line operators to manipulate and analyse Climate and NWP model Data || http://www.mpimet.mpg.de/fileadmin/software/cdo || || CEA || Alternatives energies and atomic energy commission (FR), public government-funded research organisation || http://www.cea.fr || || CeCILL || Free software license compatible with GNU GPL and compliant with French law || http://www.cecill.info/index.en.html || || CICE || Los Alamos sea ice model, component for use in fully coupled atmosphere-ice-ocean-land global circulation models || http://oceans11.lanl.gov/trac/CICE || || CMCC || Non-profit research institution investigating and modeling the climate system and its interactions with society and the environment (IT) || http://www.cmcc.it || || CMIP || Coupled Model Intercomparison Project, standard experimental protocol to evaluate performance and identify errors between modeling centers || http://cmip-pcmdi.llnl.gov || || CNRS || National Center for Scientific Research, French largest governmental research organisation || http://www.cnrs.fr || || Curie || Sandy Bridge Bull supercomputer of CEA (FR), 1,5 PFLOPS peak || http://www-hpc.cea.fr/en/complexe/tgcc-curie.htm || || HAL || Open archive of scholarly documents from all academic fields (FR) || http://hal.archives-ouvertes.fr || || IDRIS || Institute for Development and Resources in Intensive Scientific computing (FR), centre of both high performance computing resources and expertise || http://www.idris.fr || || INGV || Institution gathering all scientific and technical institutions operating in geophysics and volcanology (IT) || http://www.ingv.it || || INRIA || National Institute for computer science and applied mathematics (FR) || http://www.inria.fr || || INSU || Institute for engineering and systems sciences within CNRS (FR) || http://www.insu.cnrs.fr || || IPSL || Federation of 9 public research laboratories involved in research on terrestrial and planetary environments (FR) || http://www.ipsl.fr || || LGGE || Research laboratory focuses on snow and ice, glaciers, climate and environment (FR) || http://lgge.osug.fr || || Mercator_Océan || Privately-owned non-profit company providing operational ocean forecast services (FR) || http://www.mercator-ocean.fr || || Met_Office || Meteorological Office (UK), national executive agency and trading fund providing weather and climate services || http://www.metoffice.gov.uk || || NERC || Natural Environment Research Council, British largest funder of research, training and innovation in environmental science || http://www.nerc.ac.uk || || NOC || National Oceanography Centre (UK), NERC institute for marine science research and technology || http://noc.ac.uk || || OASIS || Ocean Atmosphere Sea Ice Soil, coupling software to synchronize numerical codes representing different components of the climate system || http://verc.enes.org/oasis || || PISCES || Pelagic Interaction Scheme for Carbon and Ecosystem Studies, biogeochemical model simulating marine ecosystems, cycles of carbon and the main nutrients || || || RENATER || National telecommunications network for research and education (FR) || http://www.renater.fr || || SVN || SubVersioN, open source version control system for sharing, managing content and its changes over time || http://subversion.apache.org || || TGCC || HPC center of CEA (FR) || http://www-hpc.cea.fr/en/complexe/tgcc.htm || || Trac || Wiki and issue tracking system for software development projects providing an interface to version control system || http://trac.edgewall.org || || UNIBO || University of Bologna (IT) || http://www.unibo.it || || XIOS || Xml Inputs Outputs Server, library dedicated to input/output management of climate code => http://forge.ipsl.jussieu.fr/ioserver || || {{{#!Fold title='Technical acronyms (in progress)' tag=h2 ||'''Acronym''' ||'''Description''' || || AMM12 || Atlantic Margin Model with 12kms horizontal resolution || || BBL || Bottom Boundary Layer || || BGC || !BioGeoChemical || || BFR || Bottom FRiction || || CLIO || Coupled Large-scale Ice Ocean || || CORE || Coordinated Ocean-ice Reference Experiments || || CPP || C !PreProcessor || || DMP || Damping || || DOC || DOCumentation || || DTA || DaTA || || EEN || Energy & ENstrophy || || ENV || ENVironment || || EOS || Equation Of State || || FCM || Flexible Configuration Manager || || FCT || Flux Corrected Transport || || GLS || Generic Length Scale || || HDF || Horizontal !DiFfusion || || HPC || High Performance Computing || || HPG || Horizontal Pressure Gradient || || IAU || Incremental Analysis Updating || || IO || !Inputs/Outputs || || IOF || Interpolation On the Fly || || ISF || Ice ShelF || || KPP || K-Profile Parameterization || || LIM || Louvain-la-neuve sea Ice Model || || LOBSTER || Lodyc Ocean Biogeochemical System for Ecosystem and Resources || || MP || Merge Party || || MPI || Message Passing Interface || || MPP || Massive Parallel Processing || || MSF || Meridional Stream Function || || NEMOVAR || NEMO VARiational data assimilation || || OBC || Open Boundary Conditions || || OFF || OFFline || || ORCA || tripolar grid, with special north fold boundary condition || || OPA || "Océan PArallélisé" ocean general circulation model || || QSR || Q? Solar Radiation || || SAS || Stand-Alone Surface || || SPG || Surface Pressure Gradient || || SSH || Sea Surface Height || || SSS || Sea Surface Salinity || || SST || Sea Surface Temperature || || ST || System Team || || TAM || Tangent and Adjoint Model || || TKE || Turbulent Kinetic Energy || || TOP || Tracers in the Ocean Paradigm, on/off-line ocean tracer and biochemistry models || || TVD || Total Variation Diminishing || || WAD || Wetting And Drying || || WG || Working Group || || WN || vertical velocity || || WP || Work Plan || || ZAD || Z (vertical) ADvection || == OPA directories || ASM || Assimilation || || BDY || BoundDarY || || C1D || Configuration 1 Dimension || || CRS || CoaRSening || || DIA || Diagnostics || || DOM || DOMain || || DYN || ocean DYNamics || || FLO || ? || || ICB || ICeBerg || || IOM || !Inputs/Outputs Manager || || LBC || Lateral Boundary Condition || || LDF || Lateral !DiFfusion || || OBS || OBServations || || SBC || Surface Boundary Conditions || || SOL || ? || || STO || STOchastic parametrization || || TRA || TRAcers || || TRD || TRenDs || || ZDF || Z (vertical) !DiFfusion || == TOP directories || C14b || ? || || CFC || !ChloroFluoroCarbons || || MY_TRC || ? || || TRP || ? || == PISCES directories ||P2Z || ? || ||P4Z || ? || ||SED || ? || }}} {{{#!Fold title='CPP keys list (in progress)' tag=h2 From `full_key_list.txt` in [source:/branches/2015/nemo_v3_6_STABLE/NEMOGCM/TOOLS/COMPILE COMPILE directory] || '''CPP key''' || '''Description''' || || key_agrif || ? || || key_asminc || ? || || key_bdy || ? || || key_c14b || ? || || key_c1d || ? || || key_cfc || ? || || key_cice || ? || || key_cice4 || ? || || key_cpl_carbon_cycle || ? || || key_cyclone || ? || || key_degrad || ? || || key_diaar5 || ? || || key_diadct || ? || || key_diaeiv || ? || || key_diaharm || ? || || key_diahth || ? || || key_diainstant || ? || || key_diaobs || ? || || key_dimgout || ? || || key_dynldf_c1d || ? || || key_dynldf_c2d || ? || || key_dynldf_c3d || ? || || key_dynldf_smag || ? || || key_dynspg_exp || ? || || key_dynspg_flt || ? || || key_dynspg_ts || ? || || key_esopa || ? || || key_floats || ? || || key_iomput || ? || || key_kppcustom || ? || || key_kpplktb || ? || || key_kriest || ? || || key_ldfslp || ? || || key_lim2 || ? || || key_lim2_vp || ? || || key_lim3 || ? || || key_mpp_mpi || ? || || key_mpp_rep || ? || || key_my_trc || ? || || key_nemocice_decomp || ? || || key_netcdf4 || ? || || key_nosignedzero || ? || || key_noslip_accurate || ? || || key_oa3mct_v3 || ? || || key_oasis3 || ? || || key_offline || ? || || key_offobsoper || ? || || key_pisces || ? || || key_pisces_reduced || ? || || key_sed || ? || || key_sed_off || ? || || key_tide || ? || || key_top || ? || || key_trabbl || ? || || key_traldf_ano || ? || || key_traldf_c1d || ? || || key_traldf_c2d || ? || || key_traldf_c3d || ? || || key_traldf_eiv || ? || || key_traldf_smag || ? || || key_trdmxl_trc || ? || || key_trdtrc || ? || || key_vectopt_loop || ? || || key_vvl || ? || || key_xios2 || ? || || key_zdfcst || ? || || key_zdfddm || ? || || key_zdfgls || ? || || key_zdfkpp || ? || || key_zdfric || ? || || key_zdftke || ? || || key_zdftmx || ? || || key_zdftmx_new || ? || }}} {{{#!Fold title='Reference Configurations parameter names (in progress)' tag=h2 {{{#!Fold title='AMM' tag=h3 || '''Parameter''' || '''Description''' || || nav_lon || ? || || nav_lat || ? || || nav_lev || ? || || time_counter || ? || || rnf_b || ? || || rnf_hc_b || ? || || rnf_sc_b || ? || || utau_b || ? || || vtau_b || ? || || qns_b || ? || || emp_b || ? || || sfx_b || ? || || !en || ? || || avt || ? || || avm || ? || || avmu || ? || || avmv || ? || || mxln || ? || || ub2_b || ? || || vb2_b || ? || || sbc_hc_b || ? || || sbc_sc_b || ? || || fse3t_b || ? || || fse3t_n || ? || || ub || ? || || vb || ? || || tb || ? || || sb || ? || || rotb || ? || || hdivb || ? || || sshb || ? || || un || ? || || vn || ? || || tn || ? || || sn || ? || || rotn || ? || || hdivn || ? || || sshn || ? || || rhop || ? || }}} {{{#!Fold title='ORCA2_LIM_PISCES' tag=h3 ==== OPA || '''Parameter''' || '''Description''' || || nav_lon || ? || || nav_lat || ? || || nav_lev || ? || || time_counter || ? || || ssu_m || ? || || ssv_m || ? || || sst_m || ? || || sss_m || ? || || ssh_m || ? || || frq_m || ? || || rnf_b || ? || || rnf_hc_b || ? || || rnf_sc_b || ? || || utau_b || ? || || vtau_b || ? || || qns_b || ? || || emp_b || ? || || sfx_b || ? || || en || ? || || avt || ? || || avm || ? || || avmu || ? || || avmv || ? || || dissl || ? || || sbc_hc_b || ? || || sbc_sc_b || ? || || qsr_hc_b || ? || || fraqsr_1lev || ? || || gcx || ? || || gcxb || ? || || ub || ? || || vb || ? || || tb || ? || || sb || ? || || rotb || ? || || hdivb || ? || || sshb || ? || || un || ? || || vn || ? || || tn || ? || || sn || ? || || rotn || ? || || hdivn || ? || || sshn || ? || || rhop || ? || ==== LIM || hicif || ? || || hsnif || ? || || frld || ? || || sist || ? || || tbif1 || ? || || tbif2 || ? || || tbif3 || ? || || u_ice || ? || || v_ice || ? || || qstoif || ? || || fsbbq || ? || || stress1_i || ? || || stress2_i || ? || || stress12_i || ? || || sxice || ? || || syice || ? || || sxxice || ? || || syyice || ? || || sxyice || ? || || sxsn || ? || || sysn || ? || || sxxsn || ? || || syysn || ? || || sxysn || ? || || sxa || ? || || sya || ? || || sxxa || ? || || syya || ? || || sxya || ? || || sxc0 || ? || || syc0 || ? || || sxxc0 || ? || || syyc0 || ? || || sxyc0 || ? || || sxc1 || ? || || syc1 || ? || || sxxc1 || ? || || syyc1 || ? || || sxyc1 || ? || || sxc2 || ? || || syc2 || ? || || sxxc2 || ? || || syyc2 || ? || || sxyc2 || ? || || sxst || ? || || !syst || ? || || sxxst || ? || || syyst || ? || || sxyst || ? || ==== TRC || PH || ? || || Silicalim || ? || || Silicamax || ? || || sbc_DIC_b || ? || || sbc_Alkalini_b || ? || || sbc_O2_b || ? || || sbc_CaCO3_b || ? || || sbc_PO4_b || ? || || sbc_POC_b || ? || || sbc_Si_b || ? || || sbc_PHY_b || ? || || sbc_ZOO_b || ? || || sbc_DOC_b || ? || || sbc_PHY2_b || ? || || sbc_ZOO2_b || ? || || sbc_DSi_b || ? || || sbc_Fer_b || ? || || sbc_BFe_b || ? || || sbc_GOC_b || ? || || sbc_SFe_b || ? || || sbc_DFe_b || ? || || sbc_GSi_b || ? || || sbc_NFe_b || ? || || sbc_NCHL_b || ? || || sbc_DCHL_b || ? || || sbc_NO3_b || ? || || sbc_NH4_b || ? || || TRNDIC || ? || || TRNAlkalini || ? || || TRNO2 || ? || || TRNCaCO3 || ? || || TRNPO4 || ? || || TRNPOC || ? || || TRNSi || ? || || TRNPHY || ? || || TRNZOO || ? || || TRNDOC || ? || || TRNPHY2 || ? || || TRNZOO2 || ? || || TRNDSi || ? || || TRNFer || ? || || TRNBFe || ? || || TRNGOC || ? || || TRNSFe || ? || || TRNDFe || ? || || TRNGSi || ? || || TRNNFe || ? || || TRNNCHL || ? || || TRNDCHL || ? || || TRNNO3 || ? || || TRNNH4 || ? || || TRBDIC || ? || || TRBAlkalini || ? || || TRBO2 || ? || || TRBCaCO3 || ? || || TRBPO4 || ? || || TRBPOC || ? || || TRBSi || ? || || TRBPHY || ? || || TRBZOO || ? || || TRBDOC || ? || || TRBPHY2 || ? || || TRBZOO2 || ? || || TRBDSi || ? || || TRBFer || ? || || TRBBFe || ? || || TRBGOC || ? || || TRBSFe || ? || || TRBDFe || ? || || TRBGSi || ? || || TRBNFe || ? || || TRBNCHL || ? || || TRBDCHL || ? || || TRBNO3 || ? || || TRBNH4 || ? || }}} }}}